TCONS_00007511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007511
Unique NameTCONS_00007511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007511 ID=TCONS_00007511|Name=TCONS_00007511|organism=Clytia hemisphaerica|type=transcript|length=715bp
gctggggcgaaaataaaaaactgtAGTGTTTCcagaaaccggccgggtga
aataacttttttttctgacccggccgcagactcgGTAGTAATTGATACAT
TAGTATCCAGGgcttgcttcatactgtttgtacataaaagttatctttaa
agtatttcaatgatcttaagttatcaaaaatagcaaaaaaaaaaattttt
cctgccGGCcacatgagagcttttttccttcacccgcattgcGGAAacac
taaattttttttatgtctGGTTGGgtgaaatgtaactttttggCTACAGA
TTGATGTCGTTGGTTGATTCACCGCTAAGTTATACAACTAAATCATAGCA
AGGGTTGAAGATATATACGATGGGATGaatttaaatgtattttttgtttt
cattaacCACTTGGTGGTTGTGTTGATGGTATTCCATTGCTTTCGTTAGG
TTTGTAACATAAGCATTTGTATTTCTTTTCTCCTGATGCAGAGCATTCAT
CGGCTATATTACATCCACCGTCGCATGAAGCATGAACTGTTTGACAGAAA
CGGCGACATGAGATGACATCGTAGGTACCTTGTTTTTTATCACAATCATC
ATACAATCTACACTCTTCGTCTacaaaaaaagtcatcaatggaTAACTAA
GTAACTTTTGGCAAGGCGTGGCCTCCAAATAATTAAAAGTTCCTGTAGTT
ATACTATTAAGATTA
Run BLAST on NCBI

protein sequence of TCONS_00007511-protein

>TCONS_00007511-protein ID=TCONS_00007511-protein|Name=TCONS_00007511-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
NLNSITTGTFNYLEATPCQKLLSYPLMTFFVDEECRLYDDCDKKQGTYDV
ISCRRFCQTVHASCDGGCNIADECSASGEKKYKCLCYKPNESNGIPSTQP
PSG
Run BLAST on NCBI

transcript from alignment at sc0000077:170604..171318

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007511 ID=TCONS_00007511|Name=TCONS_00007511|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at sc0000077:170604..171318 (Clytia hemisphaerica)
TAATCTTAATAGTATAACTACAGGAACTTTTAATTATTTGGAGGCCACGC
CTTGCCAAAAGTTACTTAGTTAtccattgatgactttttttgtAGACGAA
GAGTGTAGATTGTATGATGATTGTGATAAAAAACAAGGTACCTACGATGT
CATCTCATGTCGCCGTTTCTGTCAAACAGTTCATGCTTCATGCGACGGTG
GATGTAATATAGCCGATGAATGCTCTGCATCAGGAGAAAAGAAATACAAA
TGCTTATGTTACAAACCTAACGAAAGCAATGGAATACCATCAACACAACC
ACCAAGTGgttaatgaaaacaaaaaatacatttaaattCATCCCATCGTA
TATATCTTCAACCCTTGCTATGATTTAGTTGTATAACTTAGCGGTGAATC
AACCAACGACATCAATCTGTAGccaaaaagttacatttcacCCAACCaga
cataaaaaaaatttagtgtTTCCgcaatgcgggtgaaggaaaaaagctct
catgtgGCCggcaggaaaaatttttttttttgctatttttgataacttaa
gatcattgaaatactttaaagataacttttatgtacaaacagtatgaagc
aagcCCTGGATACTAATGTATCAATTACTACcgagtctgcggccgggtca
gaaaaaaaagttatttcacccggccggtttctgGAAACACTacagttttt
tattttcgccccagc

Coding sequence (CDS) from alignment at sc0000077:170604..171318

>TCONS_00007511 ID=TCONS_00007511|Name=TCONS_00007511|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000077:170604..171318 (Clytia hemisphaerica)
AATCTTAATAGTATAACTACAGGAACTTTTAATTATTTGGAGGCCACGCC
TTGCCAAAAGTTACTTAGTTAtccattgatgactttttttgtAGACGAAG
AGTGTAGATTGTATGATGATTGTGATAAAAAACAAGGTACCTACGATGTC
ATCTCATGTCGCCGTTTCTGTCAAACAGTTCATGCTTCATGCGACGGTGG
ATGTAATATAGCCGATGAATGCTCTGCATCAGGAGAAAAGAAATACAAAT
GCTTATGTTACAAACCTAACGAAAGCAATGGAATACCATCAACACAACCA
CCAAGTGgttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004241XLOC_004241Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007511-proteinTCONS_00007511-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007511-exon-sc0000077-1491911889:170604..171318TCONS_00007511-exon-sc0000077-1491911889:170604..171318Clytia hemisphaericaexon
TCONS_00007511-exon-sc0000077-1510915933:170604..171318TCONS_00007511-exon-sc0000077-1510915933:170604..171318Clytia hemisphaericaexon
TCONS_00007511-exon-sc0000077-1575043694:170604..171318TCONS_00007511-exon-sc0000077-1575043694:170604..171318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:170604..171318 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.251754	0.198132	0.305723	0.378211	0.255085	0.360571	0.337562	0.933173	0.706374	0.965245	0.424573	6.43504	4.76728	0.164612	0.101871	0.212997	0.058118	2.31052	3.13632	0.0707539	0.0991972	0	0.0798825	0.602227	0.80621	0.920465	0.715658	0.333122	0.23887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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