TCONS_00007503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007503
Unique NameTCONS_00007503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007503 ID=TCONS_00007503|Name=TCONS_00007503|organism=Clytia hemisphaerica|type=transcript|length=688bp
CTACAGATGAATTCGACGTGCCACAAATCAAGTATCGAAAACGCCAACTC
TTACACCAAATCTCCCAGCATGGAGAGCCAATCAGCACGTACTTGTGCAG
ACTTGAGAAACTTGCTCAAAATCTTAATGTTACCGACCAAACAAAACTTG
ATATCATGATTGCTGGACTAGATTCTGGATACAGGAACTACTTACAAATG
AAGCAACCAGAGACGTACCGTGAGGCAACCCATGCACTTTTGCTGAAAGA
GGCAGTTGATCCACCAATGGAGTATTCAATTGAAGATTTAATGAATCAAA
TAAAGCTTATTAAAACCGATAAAGAACAGGGCAATTGTGAACAATCGGTA
GTTTGTTTCATATGCAAAGAGGAAGGACACATTTCCAGATATTGCCCCAT
TAAATATGATTAACTGTGAGAAAGAAACTATTGAACTAAATGGATTGAAA
AAAAAGACCATATATTCTAGGAAAAGTATTTTACCGTAATTGAATGTTAT
TTACTTTGTCACTATTTGTCATTAATATATATATTAAGACATTATATTTA
ACATATTCTTTAGCATAAAACGAAGACAACAGGAATGAACATTAATTTGG
CATTGATTGACATCCACTATAATTAACTTTGAAATTGATGCAACATGTAT
TGGCCTTTAAAAAAATTGACAGTTAAACTTGATGTTTA
Run BLAST on NCBI

protein sequence of TCONS_00007503-protein

>TCONS_00007503-protein ID=TCONS_00007503-protein|Name=TCONS_00007503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
TDEFDVPQIKYRKRQLLHQISQHGEPISTYLCRLEKLAQNLNVTDQTKLD
IMIAGLDSGYRNYLQMKQPETYREATHALLLKEAVDPPMEYSIEDLMNQI
KLIKTDKEQGNCEQSVVCFICKEEGHISRYCPIKYD
Run BLAST on NCBI

transcript from alignment at sc0000077:23679..24366

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007503 ID=TCONS_00007503|Name=TCONS_00007503|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at sc0000077:23679..24366 (Clytia hemisphaerica)
TAAACATCAAGTTTAACTGTCAATTTTTTTAAAGGCCAATACATGTTGCA
TCAATTTCAAAGTTAATTATAGTGGATGTCAATCAATGCCAAATTAATGT
TCATTCCTGTTGTCTTCGTTTTATGCTAAAGAATATGTTAAATATAATGT
CTTAATATATATATTAATGACAAATAGTGACAAAGTAAATAACATTCAAT
TACGGTAAAATACTTTTCCTAGAATATATGGTCTTTTTTTTCAATCCATT
TAGTTCAATAGTTTCTTTCTCACAGTTAATCATATTTAATGGGGCAATAT
CTGGAAATGTGTCCTTCCTCTTTGCATATGAAACAAACTACCGATTGTTC
ACAATTGCCCTGTTCTTTATCGGTTTTAATAAGCTTTATTTGATTCATTA
AATCTTCAATTGAATACTCCATTGGTGGATCAACTGCCTCTTTCAGCAAA
AGTGCATGGGTTGCCTCACGGTACGTCTCTGGTTGCTTCATTTGTAAGTA
GTTCCTGTATCCAGAATCTAGTCCAGCAATCATGATATCAAGTTTTGTTT
GGTCGGTAACATTAAGATTTTGAGCAAGTTTCTCAAGTCTGCACAAGTAC
GTGCTGATTGGCTCTCCATGCTGGGAGATTTGGTGTAAGAGTTGGCGTTT
TCGATACTTGATTTGTGGCACGTCGAATTCATCTGTAG

Coding sequence (CDS) from alignment at sc0000077:23679..24366

>TCONS_00007503 ID=TCONS_00007503|Name=TCONS_00007503|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0000077:23679..24366 (Clytia hemisphaerica)
TTAATCATATTTAATGGGGCAATATCTGGAAATGTGTCCTTCCTCTTTGC
ATATGAAACAAACTACCGATTGTTCACAATTGCCCTGTTCTTTATCGGTT
TTAATAAGCTTTATTTGATTCATTAAATCTTCAATTGAATACTCCATTGG
TGGATCAACTGCCTCTTTCAGCAAAAGTGCATGGGTTGCCTCACGGTACG
TCTCTGGTTGCTTCATTTGTAAGTAGTTCCTGTATCCAGAATCTAGTCCA
GCAATCATGATATCAAGTTTTGTTTGGTCGGTAACATTAAGATTTTGAGC
AAGTTTCTCAAGTCTGCACAAGTACGTGCTGATTGGCTCTCCATGCTGGG
AGATTTGGTGTAAGAGTTGGCGTTTTCGATACTTGATTTGTGGCACGTCG
AATTCATCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004233XLOC_004233Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007503-proteinTCONS_00007503-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007503-exon-sc0000077-1491911889:23679..24366TCONS_00007503-exon-sc0000077-1491911889:23679..24366Clytia hemisphaericaexon
TCONS_00007503-exon-sc0000077-1510915933:23679..24366TCONS_00007503-exon-sc0000077-1510915933:23679..24366Clytia hemisphaericaexon
TCONS_00007503-exon-sc0000077-1575043694:23679..24366TCONS_00007503-exon-sc0000077-1575043694:23679..24366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:23679..24366 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.239767	0.227711	0.681063	0.285528	0.143101	0.41573	0.129566	0.273691	0.386085	0.613468	1.439	0.817581	0.803364	0.28787	2.15959	2.37414	1.98663	2.60715	3.02766	2.29893	1.48124	1.16473	0.117847	0	4.95165	4.36481	3.20371	1.95211
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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