TCONS_00007474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007474
Unique NameTCONS_00007474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007474 ID=TCONS_00007474|Name=TCONS_00007474|organism=Clytia hemisphaerica|type=transcript|length=1962bp
GGAactaattgaaaaatatatattttgaccCCCGGAAAGTTTTGACCCAT
GGCAACTGAACACATGAAGATAAGGTCGCCTGTTTAACGTGAATTCAGAT
CGAAATAGGCAGTGAAACACTGACagcataaattttcaaattctaggTGT
TGTAACACGaactaatataatttcaaaatgagaGAAATCGTTCACTTGCA
AGCTGGACAATGCGGTAACCAAATTGGTGCCAAGTTTTGGGAAGTCATCT
CTGATGAACACGGTATCGACCCCACCGGAACCTACCATGGTGATTCAGAT
TTGCAATTAGAAAGAATCAATGTATATTACAATGAGGCCACTGGTGGTAA
ATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACCTGGAACTATGGATT
CAGTTAGATCAGGACCTTTTGGACAAATTTTTAGACCAGATAATTTCGTT
TTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAAGGACATTATACTGA
AGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGTACGTAAAGAAGCTG
AAAGCTGTGACTGTTTACAAGGATTCCAACTTACACACTCCCTTGGTGGA
GGCACTGGATCTGGTATGGGAACACTTCTCATTTCCAAAATCCGTGAGGA
ATACCCTGACAGAATCATGAACACATTCAGTGTTGTCCCATCCCCAAAAG
TCTCTGATACCGTTGTTGAACCATACAATGCTACCTTATCTGTCCATCAA
CTTGTCGAAAATACTGATGAAACCTTTTGTATCGACAACGAGGCCTTATA
CGATATCTGCTTCAGAACCTTGAAATTAACAACACCTACCTATGGAGATC
TCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCACCACCTGTCTCCGA
TTCCCTGGTCAATTGAATGCTGACCTCCGTAAATTAGCTGTCAACATGGT
CCCATTCCCCCGTCTCCATTTCTTCATGCCTGGATTTGCACCATTGACCA
GCCGTGGCTCGCAACAATACCGTGCCTTGACTGTCCCAGAATTGACCCAA
CAAATGTTCGATGCCAAGAACATGATGGCTGCCTGTGATCCACGTCATGG
ACGATACTTGACCGTTGCTGCCATGTTCCGTGGTAGAATGTCAATGAAGG
AAGTTGATGAACAAATGTTGAATGTTCAAAACAAGAACAGCTCATACTTC
GTTGAATGGATTCCAAACAACGTCAAGACCGCTGTCTGTGATATCCCACC
ACGTGGATTGAAGATGTCTGCTACCTTCATTGGTAACAGCACTGCCATCC
AAGAATTGTTCAAACGTATCAGCGAACAATTCACTGCTATGTTCCGAAGA
AAGGCTTTCTTGCATTGGTATACTGGTGAAGGTATGGACGAAATGGAATT
CACCGAAGCTGAATCCAACATGAATGATCTCGTCTCTGAATACCAACAAT
ACCAAGATGCCACTGCTGATGATGAAGGAGAATTcgaagaagaggaagaa
gaagatGCTGAATAAATTATgttctttttaactttttgggatGTCTTTAA
TTGTATTTGTGCTAATTTGAAGACTGACTTTAATTTCTGTAAATAATACT
TTTCTATTCCTGgtatttcatttcttttgaaaacattttcttcttataaa
tcaccttttcattaatttttgtgtttaaaaaataatcttttttgtGAATC
TGAATCTTTAGGGGAAATTTCGACCAACATTTCAGAAAACCGTTTTTCAG
CTTACTTTTTGGAGacactcaatttttttaaggGCTAGTTATTAGTCACc
acaacttgatttttttaacttttcgacttttttgatatatttaaaCTCAT
TTTTTCTGCCCCTCCAGCTAACAAACCTACATGAATCCCTGTCAGAATTC
GACGTCCTTTCCCGATGGTTGGTCTGAACGTTATAAGAAAGTTTAGCCCA
AAAAAAATAATC
Run BLAST on NCBI

protein sequence of TCONS_00007474-protein

>TCONS_00007474-protein ID=TCONS_00007474-protein|Name=TCONS_00007474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVY
YNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETF
CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVK
TAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQDATADDEGEFEEEEEEDAE
Run BLAST on NCBI

transcript from alignment at sc0000077:666494..669968+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007474 ID=TCONS_00007474|Name=TCONS_00007474|organism=Clytia hemisphaerica|type=transcript|length=3475bp|location=Sequence derived from alignment at sc0000077:666494..669968+ (Clytia hemisphaerica)
GGAactaattgaaaaatatatattttgaccCCCGGAAAGTTTTGACCCAT
GGCAACTGAACACATGAAGATAAGGTCGCCTGTTTAACGTGAATTCAGAT
CGAAATAGGCAGTGAAACACTGACagcataaattttcaaattctaggTGT
TGTAACACGaactaatataatttcaaaatgagaGAAATCGTTCACTTGCA
AGCTGGACAATGCGGTAACCAAATTGGTGCCAAGGTATGTGCCTTTTGTT
TTTTTCCCCCGCTTTTCGTCCTATttttttgtgagtttttgaaTCAATAT
GCATTTTCTGAGATGCttagaaaactaaaaaaacgtCTCTTTACTTTTGT
AGTTTTGGGAAGTCATCTCTGATGAACACGGTATCGACCCCACCGGAACC
TACCATGGTGATTCAGATTTGCAATTAGAAAGAATCAATGTATATTACAA
TGAGGCCACTGGtaagttttgattttcttcatGCCACTCCCACCTAAGGA
TGCTTTATTGCAATAATACGTAATGTTATCTGAGgcttgaaatatcttta
tttaaGTTAACAAGGCAAATTGCATCCTCCTGTCCTGCTTGTGCTTCAGA
CTGATCATTTCTTTTGGAAACATTAGATGAGTCTTCATCAAATAAAGTAA
AGTTACAACGTAATAGGATAAAGTACTAAAGGATAtcaaatttgttcttt
tttcagGTGGTAAATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACCT
GGAACTATGGATTCAGTTAGATCAGGACCTTTTGGACAAATTTTTAGACC
AGATAATTTCGTTTTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAAG
GACATTATACTGAAGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGTA
CGTAAAGAAGCTGAAAGCTGTGACTGTTTACAAGGATTCCAACTTACACA
CTCCCTTGGTGGAGGCACTGGATCTGGTATGGGAACACTTCTCATTTCCA
AAATCCGTGAGGAATACCCTGACAGAATCATGAACACATTCAGTGTTGTC
CCATCCCCAAAAGTCTCTGATACCGTTGTTGAACCATACAATGCTACCTT
ATCTGTCCATCAACTTGTCGAAAATACTGATGAAACCTTTTGTATCGACA
ACGAGGCCTTATACGATATCTGCTTCAGAACCTTGAAATTAACAACACCT
ACCTATGGAGATCTCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCAC
CACCTGTCTCAGATTCCCTGGTCAAGTAAGTATATTTCAAGTGTCTTTAC
ATTGGTGAAGTTATAAGGCTGAGTGAAATAGCTTTCTTACATACCATCAT
AGGAGTGATTTGTTgtgttaattttcatttttagtcaGGTCAAAAACTAA
AGTTAACTATAATTTTGAGAACTTTGATTGGTAAATATCAGTATTAAATA
TATCTCTTACTTGTANATACGTAATGTTATCTGAGgcttgaaatatcttt
atttaaGTTAACAAGGCAAATTGCATCCTCCTGTCCTGCTTGTGCTTCAG
ACTGATCATTTCTTTTGGAAACATTAGATGAGTCTTCATCAAATAAAGTA
AAGTTACAACGTAATAGGATAAAGTACTAAAGGATAtcaaatttgttctt
ttttcagGTGGTAAATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACC
TGGAACTATGGATTCAGTTAGATCAGGACCTTTTGGACAAATTTTTAGAC
CAGATAATTTCGTTTTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAA
GGACATTATACTGAAGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGT
ACGTAAAGAAGCTGAAAGCTGTGACTGTTTACAAGGATTCCAACTTACAC
ACTCCCTTGGTGGAGGCACTGGATCTGGTATGGGAACACTTCTCATTTCC
AAAATCCGTGAGGAATACCCTGACAGAATCATGAACACATTCAGTGTTGT
CCCATCCCCAAAAGTCTCTGATACCGTTGTTGAACCATACAATGCTACCT
TATCTGTCCATCAACTTGTCGAAAATACTGATGAAACCTTTTGTATCGAC
AACGAGGCCTTATACGATATCTGCTTCAGAACCTTGAAATTAACAACACC
TACCTATGGAGATCTCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCA
CCACATGTCTCCGATTCCCTGGTCAAGTAAGTATATTTCAAGTGTCTTTA
CATTGGTGAAGTTATAAGGCTGAGTGAAATAGCTTTCTTACATACCACCA
TAGGAGTGATTTGTTgtgttaattttcatttttagtcaGGTCAAAAACTA
AAGCTAACTATAACTTTGAGAACTTTGATTGGTAAATACCAGTATTAAAT
AATATCTCTTACTTGTCTATTCTAGTTGAATGCTGACCTCCGTAAATTAG
CTGTCAACATGGTCCCATTCCCCCGTCTCCATTTCTTCATGCCTGGATTT
GCACCATTGACCAGCCGTGGCTCGCAACAATACCGTGCCTTGACTGTCCC
AGAATTGACCCAACAAATGTTCGATGCCAAGAACATGATGGCTGCCTGTG
ATCCACGTCATGGACGATACTTGACCGTTGCTGCCATGTTCCGTGGTAGA
ATGTCAATGAAGGAAGTTGATGAACAAATGTTGAATGTTCAAAACAAGAA
CAGCTCATACTTCGTTGAATGGATTCCAAACAACGTCAAGACCGCTGTCT
GTGATATCCCACCACGTGGATTGAAGATGTCTGCTACCTTCATTGGTAAC
AGCACTGCCATCCAAGAATTGTTCAAACGTATCAGCGAACAATTCACTGC
TATGTTCCGAAGAAAGGCTTTCTTGCATTGGTATACTGGTGAAGGTATGG
ACGAAATGGAATTCACCGAAGCTGAATCCAACATGAATGATCTCGTCTCT
GAATACCAACAATACCAAGATGCCACTGCTGATGATGAAGGAGAATTcga
agaagaggaagaagaagatGCTGAATAAATTATgttctttttaacttttt
gggatGTCTTTAATTGTATTTGTGCTAATTTGAAGACTGACTTTAATTTC
TGTAAATAATACTTTTCTATTCCTGgtatttcatttcttttgaaaacatt
ttcttcttataaatcaccttttcattaatttttgtgtttaaaaaataatc
ttttttgtGAATCTGAATCTTTAGGGGAAATTTCGACCAACATTTCAGAA
AACCGTTTTTCAGCTTACTTTTTGGAGacactcaatttttttaaggGCTA
GTTATTAGTCACcacaacttgatttttttaacttttcgacttttttgata
tatttaaaCTCATTTTTTCTGCCCCTCCAGCTAACAAACCTACATGAATC
CCTGTCAGAATTCGACGTCCTTTCCCGATGGTTGGTCTGAACGTTATAAG
AAAGTTTAGCCCAAAAAAAATAATC

Coding sequence (CDS) from alignment at sc0000077:666494..669968+

>TCONS_00007474 ID=TCONS_00007474|Name=TCONS_00007474|organism=Clytia hemisphaerica|type=CDS|length=6690bp|location=Sequence derived from alignment at sc0000077:666494..669968+ (Clytia hemisphaerica)
atgagaGAAATCGTTCACTTGCAAGCTGGACAATGCGGTAACCAAATTGG
TGCCAAGTTTTGGGAAGTCATCTCTGATGAACACGGTATCGACCCCACCG
GAACCTACCATGGTGATTCAGATTTGCAATTAGAAAGAATCAATGTATAT
TACAATGAGGCCACTGGTGGTAAATATGTTCCAAGAGCTGTCCTTGTTGA
TTTGGAACCTGGAACTATGGATTCAGTTAGATCAGGACCTTTTGGACAAA
TTTTTAGACCAGATAATTTCGTTTTTGGACAATCAGGAGCCGGTAATAAC
TGGGCTAAAGGACATTATACTGAAGGTGCAGAGTTAGTAGACTCTGTTTT
AGATGTTGTACGTAAAGAAGCTGAAAGCTGTGACTGTTTACAAGGATTCC
AACTTACACACTCCCTTGGTGGAGGCACTGGATCTGGTATGGGAACACTT
CTCATTTCCAAAATCCGTGAGGAATACCCTGACAGAATCATGAACACATT
CAGTGTTGTCCCATCCCCAAAAGTCTCTGATACCGTTGTTGAACCATACA
ATGCTACCTTATCTGTCCATCAACTTGTCGAAAATACTGATGAAACCTTT
TGTATCGACAACGAGGCCTTATACGATATCTGCTTCAGAACCTTGAAATT
AACAACACCTACCTATGGAGATCTCAACCATCTCGTTTCTGCCACCATGA
GCGGTGTCACCACCTGTCTCCGATTCCCTGGTCAATTGAATGCTGACCTC
CGTAAATTAGCTGTCAACATGGTCCCATTCCCCCGTCTCCATTTCTTCAT
GCCTGGATTTGCACCATTGACCAGCCGTGGCTCGCAACAATACCGTGCCT
TGACTGTCCCAGAATTGACCCAACAAATGTTCGATGCCAAGAACATGATG
GCTGCCTGTGATCCACGTCATGGACGATACTTGACCGTTGCTGCCATGTT
CCGTGGTAGAATGTCAATGAAGGAAGTTGATGAACAAATGTTGAATGTTC
AAAACAAGAACAGCTCATACTTCGTTGAATGGATTCCAAACAACGTCAAG
ACCGCTGTCTGTGATATCCCACCACGTGGATTGAAGATGTCTGCTACCTT
CATTGGTAACAGCACTGCCATCCAAGAATTGTTCAAACGTATCAGCGAAC
AATTCACTGCTATGTTCCGAAGAAAGGCTTTCTTGCATTGGTATACTGGT
GAAGGTATGGACGAAATGGAATTCACCGAAGCTGAATCCAACATGAATGA
TCTCGTCTCTGAATACCAACAATACCAAGATGCCACTGCTGATGATGAAG
GAGAATTcgaagaagaggaagaagaagatGCTGAATAAatgagaGAAATC
GTTCACTTGCAAGCTGGACAATGCGGTAACCAAATTGGTGCCAAGTTTTG
GGAAGTCATCTCTGATGAACACGGTATCGACCCCACCGGAACCTACCATG
GTGATTCAGATTTGCAATTAGAAAGAATCAATGTATATTACAATGAGGCC
ACTGGTGGTAAATATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACCTGG
AACTATGGATTCAGTTAGATCAGGACCTTTTGGACAAATTTTTAGACCAG
ATAATTTCGTTTTTGGACAATCAGGAGCCGGTAATAACTGGGCTAAAGGA
CATTATACTGAAGGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGTACG
TAAAGAAGCTGAAAGCTGTGACTGTTTACAAGGATTCCAACTTACACACT
CCCTTGGTGGAGGCACTGGATCTGGTATGGGAACACTTCTCATTTCCAAA
ATCCGTGAGGAATACCCTGACAGAATCATGAACACATTCAGTGTTGTCCC
ATCCCCAAAAGTCTCTGATACCGTTGTTGAACCATACAATGCTACCTTAT
CTGTCCATCAACTTGTCGAAAATACTGATGAAACCTTTTGTATCGACAAC
GAGGCCTTATACGATATCTGCTTCAGAACCTTGAAATTAACAACACCTAC
CTATGGAGATCTCAACCATCTCGTTTCTGCCACCATGAGCGGTGTCACCA
CCTGTCTCCGATTCCCTGGTCAATTGAATGCTGACCTCCGTAAATTAGCT
GTCAACATGGTCCCATTCCCCCGTCTCCATTTCTTCATGCCTGGATTTGC
ACCATTGACCAGCCGTGGCTCGCAACAATACCGTGCCTTGACTGTCCCAG
AATTGACCCAACAAATGTTCGATGCCAAGAACATGATGGCTGCCTGTGAT
CCACGTCATGGACGATACTTGACCGTTGCTGCCATGTTCCGTGGTAGAAT
GTCAATGAAGGAAGTTGATGAACAAATGTTGAATGTTCAAAACAAGAACA
GCTCATACTTCGTTGAATGGATTCCAAACAACGTCAAGACCGCTGTCTGT
GATATCCCACCACGTGGATTGAAGATGTCTGCTACCTTCATTGGTAACAG
CACTGCCATCCAAGAATTGTTCAAACGTATCAGCGAACAATTCACTGCTA
TGTTCCGAAGAAAGGCTTTCTTGCATTGGTATACTGGTGAAGGTATGGAC
GAAATGGAATTCACCGAAGCTGAATCCAACATGAATGATCTCGTCTCTGA
ATACCAACAATACCAAGATGCCACTGCTGATGATGAAGGAGAATTcgaag
aagaggaagaagaagatGCTGAATAAatgagaGAAATCGTTCACTTGCAA
GCTGGACAATGCGGTAACCAAATTGGTGCCAAGTTTTGGGAAGTCATCTC
TGATGAACACGGTATCGACCCCACCGGAACCTACCATGGTGATTCAGATT
TGCAATTAGAAAGAATCAATGTATATTACAATGAGGCCACTGGTGGTAAA
TATGTTCCAAGAGCTGTCCTTGTTGATTTGGAACCTGGAACTATGGATTC
AGTTAGATCAGGACCTTTTGGACAAATTTTTAGACCAGATAATTTCGTTT
TTGGACAATCAGGAGCCGGTAATAACTGGGCTAAAGGACATTATACTGAA
GGTGCAGAGTTAGTAGACTCTGTTTTAGATGTTGTACGTAAAGAAGCTGA
AAGCTGTGACTGTTTACAAGGATTCCAACTTACACACTCCCTTGGTGGAG
GCACTGGATCTGGTATGGGAACACTTCTCATTTCCAAAATCCGTGAGGAA
TACCCTGACAGAATCATGAACACATTCAGTGTTGTCCCATCCCCAAAAGT
CTCTGATACCGTTGTTGAACCATACAATGCTACCTTATCTGTCCATCAAC
TTGTCGAAAATACTGATGAAACCTTTTGTATCGACAACGAGGCCTTATAC
GATATCTGCTTCAGAACCTTGAAATTAACAACACCTACCTATGGAGATCT
CAACCATCTCGTTTCTGCCACCATGAGCGGTGTCACCACCTGTCTCCGAT
TCCCTGGTCAATTGAATGCTGACCTCCGTAAATTAGCTGTCAACATGGTC
CCATTCCCCCGTCTCCATTTCTTCATGCCTGGATTTGCACCATTGACCAG
CCGTGGCTCGCAACAATACCGTGCCTTGACTGTCCCAGAATTGACCCAAC
AAATGTTCGATGCCAAGAACATGATGGCTGCCTGTGATCCACGTCATGGA
CGATACTTGACCGTTGCTGCCATGTTCCGTGGTAGAATGTCAATGAAGGA
AGTTGATGAACAAATGTTGAATGTTCAAAACAAGAACAGCTCATACTTCG
TTGAATGGATTCCAAACAACGTCAAGACCGCTGTCTGTGATATCCCACCA
CGTGGATTGAAGATGTCTGCTACCTTCATTGGTAACAGCACTGCCATCCA
AGAATTGTTCAAACGTATCAGCGAACAATTCACTGCTATGTTCCGAAGAA
AGGCTTTCTTGCATTGGTATACTGGTGAAGGTATGGACGAAATGGAATTC
ACCGAAGCTGAATCCAACATGAATGATCTCGTCTCTGAATACCAACAATA
CCAAGATGCCACTGCTGATGATGAAGGAGAATTcgaagaagaggaagaag
aagatGCTGAATAAatgagaGAAATCGTTCACTTGCAAGCTGGACAATGC
GGTAACCAAATTGGTGCCAAGTTTTGGGAAGTCATCTCTGATGAACACGG
TATCGACCCCACCGGAACCTACCATGGTGATTCAGATTTGCAATTAGAAA
GAATCAATGTATATTACAATGAGGCCACTGGTGGTAAATATGTTCCAAGA
GCTGTCCTTGTTGATTTGGAACCTGGAACTATGGATTCAGTTAGATCAGG
ACCTTTTGGACAAATTTTTAGACCAGATAATTTCGTTTTTGGACAATCAG
GAGCCGGTAATAACTGGGCTAAAGGACATTATACTGAAGGTGCAGAGTTA
GTAGACTCTGTTTTAGATGTTGTACGTAAAGAAGCTGAAAGCTGTGACTG
TTTACAAGGATTCCAACTTACACACTCCCTTGGTGGAGGCACTGGATCTG
GTATGGGAACACTTCTCATTTCCAAAATCCGTGAGGAATACCCTGACAGA
ATCATGAACACATTCAGTGTTGTCCCATCCCCAAAAGTCTCTGATACCGT
TGTTGAACCATACAATGCTACCTTATCTGTCCATCAACTTGTCGAAAATA
CTGATGAAACCTTTTGTATCGACAACGAGGCCTTATACGATATCTGCTTC
AGAACCTTGAAATTAACAACACCTACCTATGGAGATCTCAACCATCTCGT
TTCTGCCACCATGAGCGGTGTCACCACCTGTCTCCGATTCCCTGGTCAAT
TGAATGCTGACCTCCGTAAATTAGCTGTCAACATGGTCCCATTCCCCCGT
CTCCATTTCTTCATGCCTGGATTTGCACCATTGACCAGCCGTGGCTCGCA
ACAATACCGTGCCTTGACTGTCCCAGAATTGACCCAACAAATGTTCGATG
CCAAGAACATGATGGCTGCCTGTGATCCACGTCATGGACGATACTTGACC
GTTGCTGCCATGTTCCGTGGTAGAATGTCAATGAAGGAAGTTGATGAACA
AATGTTGAATGTTCAAAACAAGAACAGCTCATACTTCGTTGAATGGATTC
CAAACAACGTCAAGACCGCTGTCTGTGATATCCCACCACGTGGATTGAAG
ATGTCTGCTACCTTCATTGGTAACAGCACTGCCATCCAAGAATTGTTCAA
ACGTATCAGCGAACAATTCACTGCTATGTTCCGAAGAAAGGCTTTCTTGC
ATTGGTATACTGGTGAAGGTATGGACGAAATGGAATTCACCGAAGCTGAA
TCCAACATGAATGATCTCGTCTCTGAATACCAACAATACCAAGATGCCAC
TGCTGATGATGAAGGAGAATTcgaagaagaggaagaagaagatGCTGAAT
AAatgagaGAAATCGTTCACTTGCAAGCTGGACAATGCGGTAACCAAATT
GGTGCCAAGTTTTGGGAAGTCATCTCTGATGAACACGGTATCGACCCCAC
CGGAACCTACCATGGTGATTCAGATTTGCAATTAGAAAGAATCAATGTAT
ATTACAATGAGGCCACTGGTGGTAAATATGTTCCAAGAGCTGTCCTTGTT
GATTTGGAACCTGGAACTATGGATTCAGTTAGATCAGGACCTTTTGGACA
AATTTTTAGACCAGATAATTTCGTTTTTGGACAATCAGGAGCCGGTAATA
ACTGGGCTAAAGGACATTATACTGAAGGTGCAGAGTTAGTAGACTCTGTT
TTAGATGTTGTACGTAAAGAAGCTGAAAGCTGTGACTGTTTACAAGGATT
CCAACTTACACACTCCCTTGGTGGAGGCACTGGATCTGGTATGGGAACAC
TTCTCATTTCCAAAATCCGTGAGGAATACCCTGACAGAATCATGAACACA
TTCAGTGTTGTCCCATCCCCAAAAGTCTCTGATACCGTTGTTGAACCATA
CAATGCTACCTTATCTGTCCATCAACTTGTCGAAAATACTGATGAAACCT
TTTGTATCGACAACGAGGCCTTATACGATATCTGCTTCAGAACCTTGAAA
TTAACAACACCTACCTATGGAGATCTCAACCATCTCGTTTCTGCCACCAT
GAGCGGTGTCACCACCTGTCTCCGATTCCCTGGTCAATTGAATGCTGACC
TCCGTAAATTAGCTGTCAACATGGTCCCATTCCCCCGTCTCCATTTCTTC
ATGCCTGGATTTGCACCATTGACCAGCCGTGGCTCGCAACAATACCGTGC
CTTGACTGTCCCAGAATTGACCCAACAAATGTTCGATGCCAAGAACATGA
TGGCTGCCTGTGATCCACGTCATGGACGATACTTGACCGTTGCTGCCATG
TTCCGTGGTAGAATGTCAATGAAGGAAGTTGATGAACAAATGTTGAATGT
TCAAAACAAGAACAGCTCATACTTCGTTGAATGGATTCCAAACAACGTCA
AGACCGCTGTCTGTGATATCCCACCACGTGGATTGAAGATGTCTGCTACC
TTCATTGGTAACAGCACTGCCATCCAAGAATTGTTCAAACGTATCAGCGA
ACAATTCACTGCTATGTTCCGAAGAAAGGCTTTCTTGCATTGGTATACTG
GTGAAGGTATGGACGAAATGGAATTCACCGAAGCTGAATCCAACATGAAT
GATCTCGTCTCTGAATACCAACAATACCAAGATGCCACTGCTGATGATGA
AGGAGAATTcgaagaagaggaagaagaagatGCTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004215XLOC_004215Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007474-exon-sc0000077-1491911889:666494..666727TCONS_00007474-exon-sc0000077-1491911889:666494..666727Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1510915933:666494..666727TCONS_00007474-exon-sc0000077-1510915933:666494..666727Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1575043694:666494..666727TCONS_00007474-exon-sc0000077-1575043694:666494..666727Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1491911889:666846..666954TCONS_00007474-exon-sc0000077-1491911889:666846..666954Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1510915933:666846..666954TCONS_00007474-exon-sc0000077-1510915933:666846..666954Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1575043694:666846..666954TCONS_00007474-exon-sc0000077-1575043694:666846..666954Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1491911889:667200..667748TCONS_00007474-exon-sc0000077-1491911889:667200..667748Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1510915933:667200..667748TCONS_00007474-exon-sc0000077-1510915933:667200..667748Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1575043694:667200..667748TCONS_00007474-exon-sc0000077-1575043694:667200..667748Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1491911889:668700..668719TCONS_00007474-exon-sc0000077-1491911889:668700..668719Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1510915933:668700..668719TCONS_00007474-exon-sc0000077-1510915933:668700..668719Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1575043694:668700..668719TCONS_00007474-exon-sc0000077-1575043694:668700..668719Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1491911889:668919..669968TCONS_00007474-exon-sc0000077-1491911889:668919..669968Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1510915933:668919..669968TCONS_00007474-exon-sc0000077-1510915933:668919..669968Clytia hemisphaericaexon
TCONS_00007474-exon-sc0000077-1575043694:668919..669968TCONS_00007474-exon-sc0000077-1575043694:668919..669968Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007474-proteinTCONS_00007474-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000077supercontigsc0000077:666494..669968 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3759.09	3696.16	4556.61	4612.13	5293.08	4392.41	3793.25	3861.35	2802.53	2971.39	3729.11	3868.36	2176.9	2256.46	3334.29	3317.85	3208.9	3305.85	4106.12	3878.01	3105.88	3248.59	3751.61	3584.98	3061.76	2675.42	4200.75	4598.97	4000.65	3765.17
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002453Beta_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR013838Beta-tubulin_BS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
[Close]
BLAST of TCONS_00007474 vs. Swiss-Prot (Human)
Match: TBB4B (Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE=1 SV=1)

HSP 1 Score: 851.662 bits (2199), Expect = 0.000e+0
Identity = 424/426 (99.53%), Postives = 426/426 (100.00%), Query Frame = 1 
Query:  178 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 1455
            MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
The following BLAST results are available for this feature:
BLAST of TCONS_00007474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBB4B0.000e+099.53Tubulin beta-4B chain OS=Homo sapiens GN=TUBB4B PE... [more]
back to top