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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007469 ID=TCONS_00007469|Name=TCONS_00007469|organism=Clytia hemisphaerica|type=transcript|length=2709bpRun BLAST on NCBI protein sequence of TCONS_00007469-protein >TCONS_00007469-protein ID=TCONS_00007469-protein|Name=TCONS_00007469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=532bp MHLKRQCYLSLDLSTQSLKALVTTDDLKIIFEHTINFDTDLPEFQTKDGVRun BLAST on NCBI transcript from alignment at sc0000077:417730..438635+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007469 ID=TCONS_00007469|Name=TCONS_00007469|organism=Clytia hemisphaerica|type=transcript|length=20906bp|location=Sequence derived from alignment at sc0000077:417730..438635+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000077:417730..438635+ >TCONS_00007469 ID=TCONS_00007469|Name=TCONS_00007469|organism=Clytia hemisphaerica|type=CDS|length=11193bp|location=Sequence derived from alignment at sc0000077:417730..438635+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007469 vs. Swiss-Prot (Human)
Match: XYLB (Xylulose kinase OS=Homo sapiens GN=XYLB PE=1 SV=3) HSP 1 Score: 540.036 bits (1390), Expect = 0.000e+0 Identity = 252/526 (47.91%), Postives = 350/526 (66.54%), Query Frame = 1
Query: 49 HLKRQCYLSLDLSTQSLKALVTTDDLKIIFEHTINFDTDLPEFQTKDGVHRHPDGITITSPTLMWVKAIDQMLMVLHSSDEVTLDEICMVSGTAQQHGSVYWKKAAELTLAHLNSNSSLVDQLQECFAMTDSPVWMDASTTQQCRDLEQKIGGGYELAQLTGSRAFERFTANQITKIYRCHRESYVNCDHISLVSSFVASIFVGKYAPIDYSDGSGMNLLNIRTRKWEETLLDACAPYLSDRLGEPVPSNKIIGKVSGYLQQRYGFSPDCQVLAFTGDNPAALAGMCLSSGDVAVSLGTSDTLLFWCDKANPKPTGHVFVNPIEETEFMSMLCFKNGSLPRQEVCDRVCEGSWEKFNETLKTTQAGNNGTIAINFREVEILPHAKGVHMINSDGVRLSELEPRDEVRAVIEGQFLAKRLHAESFGFQKGSTSRILATGGASQNPAILQILSNVFNLPVYTLPSTSNATCIGCIYRCKQAALGGSKAGFFEAVKSVVPPKLVCEPMADVVPIYDNLMKRYETFEKSI 1626
H R+C L D STQ +K + +L + +E +++FD DLPEF T+ GVH H DG+T+TSP LMWV+A+D +L + +S ++ +SG QQHGS+YWK A+ L L+ + L QLQ+CF+++D PVWMD+STT QCR LE +GG L+ LTGSRA+ERFT NQI KIY+ + E+Y + + ISLVSSF AS+F+G Y+PIDYSDGSGMNLL I+ + W + L ACAP+L ++L PVPS ++G +S Y QRYGF P C+V+AFTGDNPA+LAGM L GD+AVSLGTSDTL W + P GH+F NP++ +M++LCFKNGSL R+++ + SW F++ L++T+ GN G + F +EI P G H N++ +++ EVRA+IEGQF+AKR+HAE G++ S ++ILATGGAS N ILQ+L++VF+ PVY + T+N+ C+G YR GG+ F E VK P+L P +Y+ L+ +Y E+ I
Sbjct: 4 HAPRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEKMKASG-FDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSPIDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGDNPASLAGMRLEEGDIAVSLGTSDTLFLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNESVSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAFHGLAGGTDVPFSEVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRI 527 The following BLAST results are available for this feature:
BLAST of TCONS_00007469 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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