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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007450 ID=TCONS_00007450|Name=TCONS_00007450|organism=Clytia hemisphaerica|type=transcript|length=715bp ccttaaaacattaaaaagaaaaaaaactaaaaagaaaataatttcagaAC CATCAGATCATGCTTGGGCAGTACTCTCGGAACCCTCTGGTGAAGAATTA TCTATACAGACTTGCTGAGCGACAGAAACCTATTGATACGGATAAGTGGT ATTATTTGAATAGTGAGCAATTTCCAGCTCATTTACAAAGCAAGTTTCTT CAAAATTCATTGGACGAAGAAACGGAAGAATTCTTGGAGAATTGTTATGA GAAATCTGATTGGATATTCACTCAAATCTTCCACAATGTTTTCAGAGTTG TGTTAGGGTGGTTCATGTCAATGACAACAGTCAATggGTTATTAAACCGT GGTTCCATGTTCGTCTTCTCGGAGAACCAATTCTTGGAACTACTCAACGT CAATAGCTCAAGTTACCATGGAAACTCGTATCTAGATCTCGGCGCCGGTG ATGGGAAAACAACGGGAAAGTTGATCAAATATTTCGACCAATCATACGCG ACCGAACAGTCTCCCACAATGCAATGGAGGCTCAAAGAAAAAGGCTTTCA GATTCTCGAGATAGACCAATGGCAAACGCCAAACAAATACTCCTTGATCA CCGCCCTCAATTTGTTAGATCGAATCGACCATCCGGTGAAGCTGGTCAAC GAATTACGGACATCCATTGCAGACGATGGATTCGTCATATTAGCGATTGT GTTGCCCTATAATCC Run BLAST on NCBI transcript from alignment at sc0000077:115495..124625+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007450 ID=TCONS_00007450|Name=TCONS_00007450|organism=Clytia hemisphaerica|type=transcript|length=9131bp|location=Sequence derived from alignment at sc0000077:115495..124625+ (Clytia hemisphaerica) ccttaaaacattaaaaagaaaaaaaactaaaaagaaaataatttcagaAC
CATCAGATCATGCTTGGGCAGTACTCTCGGAACCCTCTGGTGAAGAATTA
TCTATACAGACTTGCTGAGCGACAGAAACCTATTGATACGGATAAGGTAT
TATTTATGTACCTTAGAAATTTTTagtgtcatttttcaatttattcatga
tattcatgacaatgttttctacggaaataccccggttttagctagtacat
gttttttttataagcaagtgtatgccccttggtcaggctcgtgtatactt
aagttcttaaagcatccaggcataggttatgcttattatatgcttatgaa
tcatgcttatgattcacctcgagccaagtttttagtgaaattttgtaaaa
atttgttcagattttgggagcagtgaaTCAGGGAAACCgtggaaagtctt
ttttttttacttgacatctaccaaacctttttaaacagataaaaatgaca
actggaaaaatatttcaggctgaaatatatgcttatgttatgtttaggaa
ttttgcaaatctgagccttcatatgcttataagcgttatgcttataaaga
aaaacatgtagtggcaaatttaaaccagacaaaagttgtataaaattttc
ttttgcgtCTTTTGTCTTtgcgtagaaaacattacgtcatgaatatcatg
aattaaaagAAGTTCGGACAAGCTTTTTTTCGCACTTCTATTCGCTTCTA
TTTAGCTAATTTTAGTTTTGTTTGAATGCTTGAATCCAAACGTATATACC
GTTCCtaaaaattctgaattttctttctcaacTATTATGGTGCtctaaat
tatcttttcaacagtaTATGTGAGAATTCGTTTGAAAATGGCAAGGAAAA
CAAAGATTAGCGCACACTTCAAGCAAATAGATTTAAGTAAGgtggaaata
aaatcctaatCCGTTCAAATACTTCCCAAGTATATAGATCATACCAATAC
CctactggtctgtaaaatacacaaacagagGCAATATTGTGAAACAGCTT
GATTTTCTATTCTTTTAGTGGTATTATTTGAATAGTGAGCAATTTCCAGC
TCATTTACAAAGCAAGTTTCTTCAAAATTCATTGGACGAAGAAACGGAAG
AATTCTTGGAGAATTGTTATGAGAAATCTGATTGGATATTCACTCAAATC
TTCCACAATGTTTTCAGAGTTGTGTTAGGGTGGTTCATGTCAATGACAAC
AGTCAATgggtaagaatattttttggacctaccccggagGGCCTTTAATT
TAACCcgtgtccgttcgttcgtctgttaccagcttttctcgcgattgact
cattagttttttttcctgatttttggcacaacgatgcaaaatggcaatac
ccaaaatgtgatggagcccgattttagaaataaaaaaattttaggctaaa
aagtgcctaaaaatgagGTTTTAATACTTTGTGTGGAATTGCTTGATTAG
TTCTTTCTGATTTTCGGCAAAAATATAGAGGATAAATTCCCTTCTGTTAT
TTtaagggaaaatgagcatttctcgcaattggcttggtatttttttctga
ttttctaatttgtatttttctcaTTACTGTCGCCATGTTTTCTGAtgttc
tatttttattttctatattttctatcaggtaggtccattcagcatgtagc
ttgttctCCACTGTGAAGTCCTAACCCCCAAATGTGTGAAACAATTGAAA
GCTAAAATGGTTGATACTATCAGATAAAGCATTAAATTCTGAGCAAAAGA
ACAATGTTACAACAAGTCTTGTACTCAAACATATAAAGAAATACACGCTT
TTGAAGTATAAAATTCTGTCAGTTAAAGTACGATTGACGTAAAATTTTGT
CCAAAACGTAACAGATTTCACAGGATGTAATTTTGAACTCTAAATGACCA
TTTTTACTCAGCGAATGTCATGCTCCATTCGTTTAATTAGTcgatttttt
actcattttgagGGATAGGAGTTTGCCTACGATTTCAGTTTTTCGGCCAT
AAAAACTTATGCTAGGCCTTATTCCTGAAGtccctctcaaaaaagtttga
taatcCTATCTTCTTTCGAACCAATCACCAGCGGTTGCGTCCCACAAAAG
ATGTTACAGATCGTGAGGATTGGCCCCCGACTATAATAAGTTAAGTTTAT
CCTCATTGACTTTTGAAATGAACGAAGAAAAAGCTTTCTTGACAGAAGCT
Acattaagagaagaaattttggcgaatgagccctttcgcggaaagaaatt
ttggcgaatttggcaaaaattttaggcacttcgccaaattcgccaaaatt
catttccgccaaaatttcttaccTTAAGCTCTTCGTTGTGCCTAAAATTT
AAAGGCTGGTTGCTAGGTAGCAATCAGGAAATAGATAGttattgcaataa
aaaagttgatataaATAAACGAaataataaaccagccgaggctggaaggt
cagccaatagagcttagccagatagctttaataagtgggttaacagatgt
aagagatgcaatgaaacagagtagactaaatatgttgaataatgtacaaa
atgagANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaactggga
gtcctctcttctgtgccaagcactggcagtgttttttaaactttaaaaca
atgttaaatgaagaccagattgatctgtttgttatggctgtgcaagatgt
gacgagagtgtgcacagcatgttgtgtaacttgacggcagcCCCCTTtcg
gcaagtctgataagagatatctataaactgttatcggcattcattccatt
ccatcattcagtcaaaatgtgcgccaaggttagaaaaggttagaaaaaca
caatctgcgtccggaactgcgtgaaaaatagtttgatcNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
tgatcaaattccaaagaccatttgtcataattttgcaagtccaataatag
gagatgtgatgtcatcatttggttcccgtcatctgatttaCGGTTACGAG
CTGGAGGGTcagaaagcttttccgctgctttgctggatttccactgtcga
cctctgcatgctctgtgtttaaaagttttcaaatcgaagtagagagccgc
atgctaatggagagtaaaccgaaaacaccaAATTTATCCACggttctcaa
ttttaaaattcggatcagtccacacgaattcccttttaacaagatgtata
gctgcttcttaacagaaaaatattttcgactgaccggctgaacgactccc
actttttaaagtagaaatgacgggaaccaaacaggttttgcgattcgcct
ttatcacaaacacgaccaagtccaaaaaagcacgattgcatccagtcttt
atatcaaatttatacagtagctgtacttttgtaaactttatcaaatccca
ataacattataacaccatcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatatgtttttattgca
aaaactattaaaaagcagcaataaaaagtatatatcagaaaattcaacat
aaacaaaaacttgagcaaacggctttaaacctttaAAGGatatagaaaaa
gaatccccttgatgaaaatcatgtgtttgatttgctgagttaaaaaaata
aatgacagaaattgaagcttgcaacagatttacactggacactggaaata
ctttggtacaatgttatcacatctgactatcgcttgagccgccatcttga
aactacattatgatctgtaaaaacaacgcacgctaaaagtacccaaaaag
ttaacccgatcggaagaaagtttagaaatcaaagtgagatcggaaaatcg
gattttttttttgccgtcttatgatgatgatgatggaaaattttacctat
ttgaatgctcagcttaggctgaccaattatgAATGTTACAAACAAACTAA
TTACtattatcaaaaattacaaattacaGTAAGAATGCCTCTTATATGTC
TCTCATCCGAATTGTTTGATTTCCCCCGTCCCAATTTTCAATTTACAAAT
ATTTAAGAAAAAGTGATGTTTTcgtcaagaatattttcatgaATTAGCGT
CTTGCGAAATGCGATATCTACCATATGGTATAAAgagtgttgtttttttc
tgtgaAAAATCATCTTGAACTTTAACTTCAACAAGCAAACACAAGATACA
GCACCAGGAGAAGAATTCAAACCACAAACTAAAATGAAGACCATCATTGC
TTTTACACTTTTCGCCGGTAAGTTTTTGGATTTCACATTTTTGCATTTCT
CTGAATTTTAGTGCGTATAAGTATGAGTATAAGTATAATAATCTAATTTG
CTTTGTGAAATCCATTTCCCGTCTCAGACGCAAAAACCTTGCTTCGACCA
CTGTTATAGCTTCAACCTTGTAGATTAATATCTGTTCCTTATCTTTACAG
TTGCTTCGGCCATCACCAACCCACCCATCACTGGAACAACACCACCAGCT
ATTCCATGTCCTAATTCATTATGTAACGGAAAATATGATGATAATTTCGC
CTTACCGTACTACAAGAACTATTTTGTCCAATGTGTCGGTGGTTTGGCTT
ACTGTCAAGCTTGCTTTCCTCTCTCCCTGGAATTCAGTCAAACTTGCAAC
CAATGTTTGTACAGCAAATATGATAACTGTCTGACTACACAAAAATGGCA
CCCAGCCACCACTTTCGCTTGCCCAGACAAATGCCCCCATTATGGACCAG
AATTCAGTGGAAATATTGAAGATCCAGATCAACCACGACAATATGTTGCT
TGCTGGAAGGGAGTTACTGTCGGATGCGTTGCTTGCCCAggaaatttgaa
attcaacCAAAAAGAAAACGCTTGCTTGTACGATGGCAAATACCTCACCA
AGTCATCCCATTAAATTCGGATATAACtgtaattcttttcaaaacgaATT
TGTATTTTGTTATTCAAGTTATTTAAGAATCCTTATAAATTAGACATTTT
AagttcaaagaaaatattatagTCAAATCAAGATATAAAAACAAATTCTT
TCTTTCACCCTGTCACGCTGAATCTAACGGAAACATGAAATTTAcgattt
tctgactttcaaaattcgacttaaaaagccccccccccccctNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtaaaaacccccccccccccccttgataACGTAATTTTGACC
TTGTTAAGCAAGAAGTTTCAATGGGCtgctccaaaaaaaatttttgcccc
GTGttgaggaggtcatttttaGAAGGCCAAAATATTCATGACCTTCCCCC
CCTggatttttaagccaatttttgaGCTACCATCTTGGATTTTTGCCTAA
AATTCCCTGGatttttcacacattttcaTTGACCCCTATggattttcttt
gttcttaaGGGGTATCCCCctggatttttcaattttccagaCCCTGCTCC
TCAACGTGAGGGTGCGGAtgttttctggaatagcccaattctACGTAACA
TTTGGAAATTTCTTGTATAATACTGTAAGTAAGTTGGCTGAGCCCATTTT
AACCCTCAGCTCATGGACTTAATAATGAGACTTAATGTGCTCGGAATCTC
TTTCAGGTTATTAAACCGTGGTTCCATGTTCGTCTTCTCGGAGAACCAAT
TCTTGGAACTACTCAACGTCAATAGCTCAAGTTACCATGGAAACTCGTAT
CTAGATCTCGGCGCCGGTGATGGGAAAACAACGGGAAAGTTGATCAAATA
TTTCGACCAATCATACGCGACCGAACAGTCTCCCACAATGCAATGGAGGC
TCAAAGAAAAAGGCTTTCAGTAAGACGCAattaaaattacttttaaaggt
tttatttttacatgagtgatcccgtttcatatcagacacatgtttcatat
caggacggaTTCTCCCTATTAGTATATTGTACCGataagcaaaaaattgt
ttttctttaccTCTTTCTgatgaccaatcttgctccacattcgtttTGAT
TTAGTGTGAAAAAGcttgcaaattaaaattgatgagcaaTTGATATCGct
cttatttaaaacaaaaatctttaaaccTAAAATAGCTCTACAATCAGTTC
ccaaatacttggcacaaaagggaaattccccacgaaattttataaccaca
aacaatttggaagcgctctaaattaggttggaaaggtagggttttaactc
tgagttttaacgctagactgaagacttaggaccttgagatctgaggatcc
aaagttcaaaaatggtccggtagggcttgaaatatagcctagaaaccaac
aaatccctcccagattgaaatattcgatgaaatcaagttgaatgTCCGAA
Atcgacattctcgctcgaacttcaattttcgaaaaatggtaaaatagcca
aaattgccaatatctTATGGCACTGGTTGTAGATCTAGATCCAGCTATAA
AAATCTTGTTAGGCCATACCAAACTATTAATGTGTCCTATTTTTCATTCC
AGTTAAAAAAATCTAACCATCCCTTAGCGATGtcttgaaaatcttatttt
ttgcagtttttttaCAAAGTCACGATCGTGGTGGTTTccattactttgaa
taaacgcccacttttttccttttaggaggaggggcgtttattcgattTTC
GTTTTCTTAGACAGCGAATACGTCATTTTATTGGAGATGTAAAAACAGTC
GAAATTAGTTTGAATACTGACaggataaaaaaattattaacatTCGCCTA
TCTGCTTTTTCCTCCATATGATTCTTCCTAACAATTATTGCTTCTATAAC
GCCCTCCTTGAGGGGAGGTATTTATTTGATGGGGGCGTTTCGAAGAATGG
TAACTAAGAATGGTATGGTTTGATggtttgaatatggggggtggaggata
taacaattttcagtgatttacccccccccccccggacaaagtgacttttg
gtcccccggacaacgggttttcccccccccccggacaaagtgacttttgg
tcccccggacaacgggttttcccccccccccggacaaagtgacttttggt
cccccggacaacgggttttcccccccccccggacaaagtgacttttggtc
ccccggacaacgggttttaccccctccccggacaaggcaaaatttgatga
tttttttttaaaaaatttttttaaatttttcccccccccccccccccccc
atgtacggacattttctggaagagcccactgtgaaatagattttttttct
gagatAACATTTAGCTGAGTCAGAAAAACTTGTTTCTTGGAAACTCTCAT
GGTATTAAGAGCCAGTACCCCTATCGAAATATTTTTCCGCATATCTTCAC
GCATATCTTCACACCAGGATTCTCGAGATAGACCAATGGCAAACGCCAAA
CAAATACTCCTTGATCACCGCCCTCAATTTGTTAGATCGAATCGACCATC
CGGTGAAGCTGGTCAACGAATTACGGACATCCATTTCAGACGATGGATTC
GTCATATTAGCGATTGTGTTGCCCTATAACCCTTGTTATGAAACTGGTAT
GTTAAAgtcttttttgataaatatttgTCTAACATGCTAGACGACTAAAG
CCGGTCTCCGCTTgtgcgcgctgcgatcgcaccttttggcctcaatcctt
tttgcttggaaaaaagataacgtcataaaaatgtagcgcgcgctcgaaaa
aaaagttgaacacatttcaacttttttcaaccgttacgtcagatcgtgcc
aatggaattgcttcatttttcaaccgaccaatagcgtggaagcatTGATC
GAAAAAGGGCGATGAAAGCGCCTGCAAATGAAGACTGGCCTTAATACAAG
GTAggaaacccgggggggggtacNGGAGCCACTATCGAAATGTTTTTCCC
CTTATCTTCACACCAGGATTCTCGAGATAGACCAATGGCAAACGCCCAAA
AAATACTCCTTGATCACCGCCCTCAATTTGTTAGATCGCATCGACCATCC
GGTGAAGCTGGTCAACGAATTACGGACATCCATTGCAGACGATGGATTCG
TCATATTAGCGATTGTGTTGCCCTATAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007450-exon-sc0000077-1491911889:115495..115640 | TCONS_00007450-exon-sc0000077-1491911889:115495..115640 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1510915933:115495..115640 | TCONS_00007450-exon-sc0000077-1510915933:115495..115640 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1575043694:115495..115640 | TCONS_00007450-exon-sc0000077-1575043694:115495..115640 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1491911889:116563..116753 | TCONS_00007450-exon-sc0000077-1491911889:116563..116753 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1510915933:116563..116753 | TCONS_00007450-exon-sc0000077-1510915933:116563..116753 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1575043694:116563..116753 | TCONS_00007450-exon-sc0000077-1575043694:116563..116753 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1491911889:122151..122363 | TCONS_00007450-exon-sc0000077-1491911889:122151..122363 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1510915933:122151..122363 | TCONS_00007450-exon-sc0000077-1510915933:122151..122363 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1575043694:122151..122363 | TCONS_00007450-exon-sc0000077-1575043694:122151..122363 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1491911889:123912..124022 | TCONS_00007450-exon-sc0000077-1491911889:123912..124022 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1510915933:123912..124022 | TCONS_00007450-exon-sc0000077-1510915933:123912..124022 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1575043694:123912..124022 | TCONS_00007450-exon-sc0000077-1575043694:123912..124022 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1491911889:124572..124625 | TCONS_00007450-exon-sc0000077-1491911889:124572..124625 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1510915933:124572..124625 | TCONS_00007450-exon-sc0000077-1510915933:124572..124625 | Clytia hemisphaerica | exon |
TCONS_00007450-exon-sc0000077-1575043694:124572..124625 | TCONS_00007450-exon-sc0000077-1575043694:124572..124625 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000077 | supercontig | sc0000077:115495..124625 + |
Blast
BLAST of TCONS_00007450 vs. Swiss-Prot (Human)
Match: METL9 (Methyltransferase-like protein 9 OS=Homo sapiens GN=METTL9 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.666e-51 Identity = 88/195 (45.13%), Postives = 131/195 (67.18%), Query Frame = 3
Query: 135 DTDKWYYLNSEQFPAHLQSKFLQNSLDEETEEFLENCYEKSDWIFTQIFHNVFRVVLGWFMSMTTVNGLLNRGSMFVFSENQFLELLNVNSSSYHGNSYLDLGAGDGKTTGKLIKYFDQSYATEQSPTMQWRLKEKGFQILEIDQWQ-TPNKYSLITALNLLDRIDHPVKLVNELRTSI-ADDGFVILAIVLPYN 713
+ +WY N E+ LQ+ F+Q+ LD+ T+ FL N EKS W+F Q++H+ V FMS T++NGLL RGSMFVFS +QF LL +N + + LDLGAGDG+ T + +F++ YATE S TM W+L++K +++L I++WQ T +Y +I+ LNLLDR D P+ L+ ++R+ + G VILA+VLP++
Sbjct: 52 ENHQWYVCNREKLCESLQAVFVQSYLDQGTQIFLNNSIEKSGWLFIQLYHSFVSSVFSLFMSRTSINGLLGRGSMFVFSPDQFQRLLKIN-PDWKTHRLLDLGAGDGEVTKIMSPHFEEIYATELSETMIWQLQKKKYRVLGINEWQNTGFQYDVISCLNLLDRCDQPLTLLKDIRSVLEPTRGRVILALVLPFH 245
The following BLAST results are available for this feature:
|