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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007447 ID=TCONS_00007447|Name=TCONS_00007447|organism=Clytia hemisphaerica|type=transcript|length=766bp
tattGCCCATGTTTTTACTACTTTGCGGTCACCATTTAATGGGCGTGGTA
TCGACTGAGTTAAAGGAATACACTTTACAAGAAGTCCGTGCGAAAATTAC
ACGATATCATTTCCTACTTGGCACGGATGAATCAGTCCGTATTTTGTTGG
AAAGCATATCTTGGTTGTACCGGAATGAGACTGAACTTGTAGTCGACGTA
TTGAATCGAGCGGGAATGGAGCGGAAACGTATTTTAAAGGATTTGTATCA
CGTCCCGGATGCGGATCCAAATGAAAATATAGCGAAATGTGAAAGGATTC
AGGTACCGCGTAACAGTGCAGAGTTTGCTCGTAATTTTTTATTTCGCTCG
AAACCAGTCATCATTGAAGGCGCAATTGATCATTGGGACGCTTTATCGAA
ATGGAGCAACGATTTTTTACGTGAAAAATACCAAGACAAGAAGGTTCATG
TAAAATTAACACCAAATGGTGAGTTCGAGGGATGCGATTTAGCACAGAAA
TTCGATAATTATGACACGTTTTCCATTCCGAAGAACGTGAAGGAACAATT
GCCGTACCCCGATTTAGTCGTCGTACGCCCTGCTGTTGGTAGTATGAAAT
TTGGTGAATTTATGGACTTGGTCGAAGGGAAAAATAACCCTAACAATATG
TCTGCTTATCTAGAATATTCATCTATTCGTGAATATTTCCCTGAACTCGA
ATACGATCTAGACCAAATGCCATTCGCTCCAGACCTTTTGAAATTATCGC
ATTTGAACATTTGGAT Run BLAST on NCBI protein sequence of TCONS_00007447-protein >TCONS_00007447-protein ID=TCONS_00007447-protein|Name=TCONS_00007447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
LPMFLLLCGHHLMGVVSTELKEYTLQEVRAKITRYHFLLGTDESVRILLE
SISWLYRNETELVVDVLNRAGMERKRILKDLYHVPDADPNENIAKCERIQ
VPRNSAEFARNFLFRSKPVIIEGAIDHWDALSKWSNDFLREKYQDKKVHV
KLTPNGEFEGCDLAQKFDNYDTFSIPKNVKEQLPYPDLVVVRPAVGSMKF
GEFMDLVEGKNNPNNMSAYLEYSSIREYFPELEYDLDQMPFAPDLLKLSH
LNIW Run BLAST on NCBI transcript from alignment at sc0000077:112394..113387+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007447 ID=TCONS_00007447|Name=TCONS_00007447|organism=Clytia hemisphaerica|type=transcript|length=994bp|location=Sequence derived from alignment at sc0000077:112394..113387+ (Clytia hemisphaerica)
tattGCCCATGTTTTTACTACTTTGCGGTCACCATTTAATGGGCGTGGTA
TCGACTGAGTTAAAGGAATACACTTTACAAGAAGTCCGTGCGAAAATTAC
ACGATATCATTTCCTACTTGGCACGGATGAATCAGTCCGTATTTTGTTGG
AAAGCATATCTTGGTTGTACCGGAATGAGACTGAACTTGTAGTCGGTATG
TACAGTAAAGAATTTACGGATGGTGAGATCCCATGGAAAGAGCAGAAATA
TTCAAATAGAGATGCATCAATCGCGTTTTTCAAGCAGAGAAAAATTGACC
GGAAATGTTTGATCCAGGCTGATTTCCGTAAATCGGTAAAAGCTGAATCG
GTGCTTCATAAATCGGTTGATGAGCTAGTAGAGTTTTTGAACGAGCAATG
CTTTTATTTTGTCACTCTTACAGACGTATTGAATCGAGCGGGAATGGAGC
GGAAACGTATTTTAAAGGATTTGTATCACGTCCCGGATGCGGATCCAAAT
GAAAATATAGCGAAATGTGAAAGGATTCAGGTACCGCGTAACAGTGCAGA
GTTTGCTCGTAATTTTTTATTTCGCTCGAAACCAGTCATCATTGAAGGCG
CAATTGATCATTGGGACGCTTTATCGAAATGGAGCAACGATTTTTTACGT
GAAAAATACCAAGACAAGAAGGTTCATGTAAAATTAACACCAAATGGTGA
GTTCGAGGGATGCGATTTAGCACAGAAATTCGATAATTATGACACGTTTT
CCATTCCGAAGAACGTGAAGGAACAATTGCCGTACCCCGATTTAGTCGTC
GTACGCCCTGCTGTTGGTAGTATGAAATTTGGTGAATTTATGGACTTGGT
CGAAGGGAAAAATAACCCTAACAATATGTCTGCTTATCTAGAATATTCAT
CTATTCGTGAATATTTCCCTGAACTCGAATACGATCTAGACCAAATGCCA
TTCGCTCCAGACCTTTTGAAATTATCGCATTTGAACATTTGGAT Coding sequence (CDS) from alignment at sc0000077:112394..113387+ >TCONS_00007447 ID=TCONS_00007447|Name=TCONS_00007447|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0000077:112394..113387+ (Clytia hemisphaerica)
ttGCCCATGTTTTTACTACTTTGCGGTCACCATTTAATGGGCGTGGTATC
GACTGAGTTAAAGGAATACACTTTACAAGAAGTCCGTGCGAAAATTACAC
GATATCATTTCCTACTTGGCACGGATGAATCAGTCCGTATTTTGTTGGAA
AGCATATCTTGGTTGTACCGGAATGAGACTGAACTTGTAGTCGACGTATT
GAATCGAGCGGGAATGGAGCGGAAACGTATTTTAAAGGATTTGTATCACG
TCCCGGATGCGGATCCAAATGAAAATATAGCGAAATGTGAAAGGATTCAG
GTACCGCGTAACAGTGCAGAGTTTGCTCGTAATTTTTTATTTCGCTCGAA
ACCAGTCATCATTGAAGGCGCAATTGATCATTGGGACGCTTTATCGAAAT
GGAGCAACGATTTTTTACGTGAAAAATACCAAGACAAGAAGGTTCATGTA
AAATTAACACCAAATGGTGAGTTCGAGGGATGCGATTTAGCACAGAAATT
CGATAATTATGACACGTTTTCCATTCCGAAGAACGTGAAGGAACAATTGC
CGTACCCCGATTTAGTCGTCGTACGCCCTGCTGTTGGTAGTATGAAATTT
GGTGAATTTATGGACTTGGTCGAAGGGAAAAATAACCCTAACAATATGTC
TGCTTATCTAGAATATTCATCTATTCGTGAATATTTCCCTGAACTCGAAT
ACGATCTAGACCAAATGCCATTCGCTCCAGACCTTTTGAAATTATCGCAT
TTGAACATTTGGttGCCCATGTTTTTACTACTTTGCGGTCACCATTTAAT
GGGCGTGGTATCGACTGAGTTAAAGGAATACACTTTACAAGAAGTCCGTG
CGAAAATTACACGATATCATTTCCTACTTGGCACGGATGAATCAGTCCGT
ATTTTGTTGGAAAGCATATCTTGGTTGTACCGGAATGAGACTGAACTTGT
AGTCGACGTATTGAATCGAGCGGGAATGGAGCGGAAACGTATTTTAAAGG
ATTTGTATCACGTCCCGGATGCGGATCCAAATGAAAATATAGCGAAATGT
GAAAGGATTCAGGTACCGCGTAACAGTGCAGAGTTTGCTCGTAATTTTTT
ATTTCGCTCGAAACCAGTCATCATTGAAGGCGCAATTGATCATTGGGACG
CTTTATCGAAATGGAGCAACGATTTTTTACGTGAAAAATACCAAGACAAG
AAGGTTCATGTAAAATTAACACCAAATGGTGAGTTCGAGGGATGCGATTT
AGCACAGAAATTCGATAATTATGACACGTTTTCCATTCCGAAGAACGTGA
AGGAACAATTGCCGTACCCCGATTTAGTCGTCGTACGCCCTGCTGTTGGT
AGTATGAAATTTGGTGAATTTATGGACTTGGTCGAAGGGAAAAATAACCC
TAACAATATGTCTGCTTATCTAGAATATTCATCTATTCGTGAATATTTCC
CTGAACTCGAATACGATCTAGACCAAATGCCATTCGCTCCAGACCTTTTG
AAATTATCGCATTTGAACATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007447-exon-sc0000077-1491911889:112394..112588 | TCONS_00007447-exon-sc0000077-1491911889:112394..112588 | Clytia hemisphaerica | exon |
| TCONS_00007447-exon-sc0000077-1510915933:112394..112588 | TCONS_00007447-exon-sc0000077-1510915933:112394..112588 | Clytia hemisphaerica | exon |
| TCONS_00007447-exon-sc0000077-1575043694:112394..112588 | TCONS_00007447-exon-sc0000077-1575043694:112394..112588 | Clytia hemisphaerica | exon |
| TCONS_00007447-exon-sc0000077-1491911889:112817..113387 | TCONS_00007447-exon-sc0000077-1491911889:112817..113387 | Clytia hemisphaerica | exon |
| TCONS_00007447-exon-sc0000077-1510915933:112817..113387 | TCONS_00007447-exon-sc0000077-1510915933:112817..113387 | Clytia hemisphaerica | exon |
| TCONS_00007447-exon-sc0000077-1575043694:112817..113387 | TCONS_00007447-exon-sc0000077-1575043694:112817..113387 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000077 | supercontig | sc0000077:112394..113387 + |
Blast
The following BLAST results are available for this feature:
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