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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007439 ID=TCONS_00007439|Name=TCONS_00007439|organism=Clytia hemisphaerica|type=transcript|length=3046bp
TGTGAGTAGCGTGGCTTATCTGATAGAAATTGGAGATCTTATCTGCAAGT
GTCGAGAAACGCAACATACCTTTGCTTCACATAGAATGTatattttttat
cctttttttagtcaaaattaaatttatctAGGGTAGACTTTTTTTGCTGA
TCAGTTTGGGACTTTCGTTCATGATTTCTCTATTATAGATAATACTTTGT
AGTACTTTGTAGATTTCCTCAAGTTTTGTGGGTGATTAAAGTCCACAGCG
GTTGGCGTGAATGCgtaaatgggctttttcacttgcgtgaatgcgtgaga
attaaaaaaaaagttgcgtGAACGTggatgcgtgaattgaaaaacttttt
ataacATTATATCACTCATGAAGTCACAAGTTTTAAGCCAAAGACAAGTA
CTAAAAACACAAttgtctcagtgacccagtgCATGCAAATTCTTTAGCCA
GGTGAGGATACAACGAAGGCGCTAAATACAATGAAGACAGAGACTAAACG
TTTGTTAAGGGGCAGGATTCGAATTCTACAAGGAATTCTACAGCTTACAA
TCCAGTTTGGATTGACCaaactacagggtgtccggaaaaaaagtatcgag
tcgatcGTACCAGTTCTACAGagagaaagttcttgtgtgtttcactaaat
tttcaatgtttatcaaagtttctctctgggtcatattaattgtcatgaga
atgagacatcttttatgaataacttttacaaaaaaacaattctcattAAC
TTTGAAAATTGTCATGAaggtaaagaaagttaattctttttaatcataat
gactgttgtaaaaacaattattttgtttgtatatatttttacaatACACG
CAACAGCCTTCCACTAAGAAGCATGTTCGAACTTGATACTTTTTTCCAGA
CACCCTCGTATATATCTTACCCAGCCTGTGAATATGGTAAcatgagatca
gattgtggttgttttctgcccaccacgctgaagctctaaagggatgggtg
aaaacataacaatctgacgaatatgcaatctcgaaatcgtaaggactgcg
ttcgtctaaaaggagaCAGTGTACAGTGTAGACAGTAAATACACTATATG
TTCaatagaaagatttttttgaggcTGTTGACAACTTGGGTCATTAATAT
TCCCTTACCattgacattaaaaaaaaggatTATCAAAAGCTTACTATATT
GCTTTTAGAAAGCTTTTTTGTGGGTTTCTATTGTAATCGTTTCGtgttgt
ttctttgtatttgcaGCTCAAATTACTTAATATATACTGTGTGAGGAATC
AATAACATACTTCGTCATTCAAAAGCCATAAGAAGAGTGAGTGGTCTAGA
TAATCTCTAGCTAAAATTTGAATGAACTTCAATAAACTTCCAAACAAGAT
GTTGGTAGAGactttgtttttggtttttgcaaTTTCGTCGAATGTTTTGG
GTGACCCTGGGTTCGAGGCTGGTCATTCAAGGGATTATCACTTGTTGCAT
GACGATACCGCGTGGGATAGAATGTACGACAGTTGGATCAAAACACATTC
CCATCTCTCAAGTCAACACCGTTTTCGTCGAAACTCTGTGTCAACAGAGC
AGCCTACCTtagaagaaatcaaaaaatttgttgAGGGCTTCAAGCCAGCT
TTCGAATCAGCACAAAAATCATTGCTAAAAATCGCAAACAAAACTGCCGT
GTTGACAGGTCGTTTGAAATCAGCTTTGAGCATTCAAGAGAAGTTGGTAC
GGAAGAATATCACTTTTAATGATCTCACTGATGTTATTGGAATGCGATTC
ACATGCCAAACAGTCAATGATACTCTTCGAATCAAATCAAAGATCGAAAA
AGACACAACCGACTTTAACATAACAGAAACCACCTGTTACGGAATGTGTC
CCGGACATGGAAAATATCGGGATAGTGGATACCGTCGCATTCATCTCATC
CTTCTCATCAAAGATGGTAGCAAATCTGCTGAATTACAAATTGGTACACC
ATACACAGATATGTGGAGCAATTGGAATCATGACTTCATTTACAAAGGAC
CCAAAAACATCGCTGACAATTCCGGGGTTCAGAATTACAGCTTATCAATG
GCTGATTATTTCTGGAAGCTAGATGAAATTCGACGTGATTTACCCCCTTG
TCCAGAAATTCTTAAAGAGGCAAACGCGTTGAAAATCTTAAGGGATGGTG
TTGCGGGTGACCACGCAGAGGAAACGTACAAGAAACTTGGATATCCTCCC
AACGCCTGTTTCTGGTGGAATGATATGAAGCTGTCTTTACCAGAAAAAGA
ATGTCCAGagaataaaaacaccaacgcTGCGAGCCTTACTAAAGCAGAAT
CGTCGATGCTGCTTGGAATCTTACTTGTTTTACATTTCATGTAAAACTGC
ATAAGAAACTGTACTTGTTTTACTCTATGAGTTTGATCACAAACAATCAC
ACAACTTCAGCAACTTCTTGTATCATTTAGTATGAAGTTTCTTTACGAAA
CATTGACTCTGTTGTAACAAAACATAAGTGACACTTTTTATTGCTACTAA
TCTAGTTGGTTGGAGTAATCCATTTATCAACACAAATATTTATGAACGAG
TAGTTAGTTTTCACATCATTTTATCCAATATCAATATTGGCGTTAGGATT
TTCTCATTAAATTTTCGAACCATTGAAGCGTCAAACCCCCCCAACTCGAA
ATTAAAGCATTGAAAAAtatgtgacgtcattgggtccctttatcTCTAAT
GTtttcaacggtcaattcgcaaatttcggaatttttgcggtcaactgGTA
CCTTTACGcctaaaaggtaaaaaaaaacgtCAATGGTTTcaacgggaaag
tgggtttttaaattttgcgaaagattgacactgcaacgacttctccTTCA
AAAAACCTGAATCTTAATTTATTTTACCGTTTTAAGCGGACTTGATTATT
AGGAAGATGCTTCAATGAGCGCGTCCGTGACGATTGGGGATGCCGTCAAG
CGCTGGGCTATAGCGTGGCATGGATTTTTCATAAATCCATTTCGAA Run BLAST on NCBI protein sequence of TCONS_00007439-protein >TCONS_00007439-protein ID=TCONS_00007439-protein|Name=TCONS_00007439-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MNFNKLPNKMLVETLFLVFAISSNVLGDPGFEAGHSRDYHLLHDDTAWDR
MYDSWIKTHSHLSSQHRFRRNSVSTEQPTLEEIKKFVEGFKPAFESAQKS
LLKIANKTAVLTGRLKSALSIQEKLVRKNITFNDLTDVIGMRFTCQTVND
TLRIKSKIEKDTTDFNITETTCYGMCPGHGKYRDSGYRRIHLILLIKDGS
KSAELQIGTPYTDMWSNWNHDFIYKGPKNIADNSGVQNYSLSMADYFWKL
DEIRRDLPPCPEILKEANALKILRDGVAGDHAEETYKKLGYPPNACFWWN
DMKLSLPEKECPENKNTNAASLTKAESSMLLGILLVLHFM Run BLAST on NCBI transcript from alignment at sc0000076:723209..726254 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007439 ID=TCONS_00007439|Name=TCONS_00007439|organism=Clytia hemisphaerica|type=transcript|length=3046bp|location=Sequence derived from alignment at sc0000076:723209..726254 (Clytia hemisphaerica)
TTCGAAATGGATTTATGAAAAATCCATGCCACGCTATAGCCCAGCGCTTG
ACGGCATCCCCAATCGTCACGGACGCGCTCATTGAAGCATCTTCCTAATA
ATCAAGTCCGCTTAAAACGGTAAAATAAATTAAGATTCAGGTTTTTTGAA
ggagaagtcgttgcagtgtcaatctttcgcaaaatttaaaaacccacttt
cccgttgAAACCATTGacgtttttttttaccttttaggCGTAAAGGTACc
agttgaccgcaaaaattccgaaatttgcgaattgaccgttgaaaACATTA
GAgataaagggacccaatgacgtcacataTTTTTCAATGCTTTAATTTCG
AGTTGGGGGGGTTTGACGCTTCAATGGTTCGAAAATTTAATGAGAAAATC
CTAACGCCAATATTGATATTGGATAAAATGATGTGAAAACTAACTACTCG
TTCATAAATATTTGTGTTGATAAATGGATTACTCCAACCAACTAGATTAG
TAGCAATAAAAAGTGTCACTTATGTTTTGTTACAACAGAGTCAATGTTTC
GTAAAGAAACTTCATACTAAATGATACAAGAAGTTGCTGAAGTTGTGTGA
TTGTTTGTGATCAAACTCATAGAGTAAAACAAGTACAGTTTCTTATGCAG
TTTTACATGAAATGTAAAACAAGTAAGATTCCAAGCAGCATCGACGATTC
TGCTTTAGTAAGGCTCGCAgcgttggtgtttttattctCTGGACATTCTT
TTTCTGGTAAAGACAGCTTCATATCATTCCACCAGAAACAGGCGTTGGGA
GGATATCCAAGTTTCTTGTACGTTTCCTCTGCGTGGTCACCCGCAACACC
ATCCCTTAAGATTTTCAACGCGTTTGCCTCTTTAAGAATTTCTGGACAAG
GGGGTAAATCACGTCGAATTTCATCTAGCTTCCAGAAATAATCAGCCATT
GATAAGCTGTAATTCTGAACCCCGGAATTGTCAGCGATGTTTTTGGGTCC
TTTGTAAATGAAGTCATGATTCCAATTGCTCCACATATCTGTGTATGGTG
TACCAATTTGTAATTCAGCAGATTTGCTACCATCTTTGATGAGAAGGATG
AGATGAATGCGACGGTATCCACTATCCCGATATTTTCCATGTCCGGGACA
CATTCCGTAACAGGTGGTTTCTGTTATGTTAAAGTCGGTTGTGTCTTTTT
CGATCTTTGATTTGATTCGAAGAGTATCATTGACTGTTTGGCATGTGAAT
CGCATTCCAATAACATCAGTGAGATCATTAAAAGTGATATTCTTCCGTAC
CAACTTCTCTTGAATGCTCAAAGCTGATTTCAAACGACCTGTCAACACGG
CAGTTTTGTTTGCGATTTTTAGCAATGATTTTTGTGCTGATTCGAAAGCT
GGCTTGAAGCCCTcaacaaattttttgatttcttctaAGGTAGGCTGCTC
TGTTGACACAGAGTTTCGACGAAAACGGTGTTGACTTGAGAGATGGGAAT
GTGTTTTGATCCAACTGTCGTACATTCTATCCCACGCGGTATCGTCATGC
AACAAGTGATAATCCCTTGAATGACCAGCCTCGAACCCAGGGTCACCCAA
AACATTCGACGAAAttgcaaaaaccaaaaacaaagtCTCTACCAACATCT
TGTTTGGAAGTTTATTGAAGTTCATTCAAATTTTAGCTAGAGATTATCTA
GACCACTCACTCTTCTTATGGCTTTTGAATGACGAAGTATGTTATTGATT
CCTCACACAGTATATATTAAGTAATTTGAGCtgcaaatacaaagaaacaa
caCGAAACGATTACAATAGAAACCCACAAAAAAGCTTTCTAAAAGCAATA
TAGTAAGCTTTTGATAatccttttttttaatgtcaatGGTAAGGGAATAT
TAATGACCCAAGTTGTCAACAgcctcaaaaaaatctttctattGAACATA
TAGTGTATTTACTGTCTACACTGTACACTGtctccttttagacgaacgca
gtccttacgatttcgagattgcatattcgtcagattgttatgttttcacc
catccctttagagcttcagcgtggtgggcagaaaacaaccacaatctgat
ctcatgTTACCATATTCACAGGCTGGGTAAGATATATACGAGGGTGTCTG
GAAAAAAGTATCAAGTTCGAACATGCTTCTTAGTGGAAGGCTGTTGCGTG
Tattgtaaaaatatatacaaacaaaataattgtttttacaacagtcatta
tgattaaaaagaattaactttctttacctTCATGACAATTTTCAAAGTTa
atgagaattgtttttttgtaaaagttattcataaaagatgtctcattctc
atgacaattaatatgacccagagagaaactttgataaacattgaaaattt
agtgaaacacacaagaactttctctCTGTAGAACTGGTACgatcgactcg
atactttttttccggacaccctgtagtttGGTCAATCCAAACTGGATTGT
AAGCTGTAGAATTCCTTGTAGAATTCGAATCCTGCCCCTTAACAAACGTT
TAGTCTCTGTCTTCATTGTATTTAGCGCCTTCGTTGTATCCTCACCTGGC
TAAAGAATTTGCATGcactgggtcactgagacaaTTGTGTTTTTAGTACT
TGTCTTTGGCTTAAAACTTGTGACTTCATGAGTGATATAATgttataaaa
agtttttcaattcacgcatccACGTTCacgcaactttttttttaattctc
acgcattcacgcaagtgaaaaagcccatttacGCATTCACGCCAACCGCT
GTGGACTTTAATCACCCACAAAACTTGAGGAAATCTACAAAGTACTACAA
AGTATTATCTATAATAGAGAAATCATGAACGAAAGTCCCAAACTGATCAG
CAAAAAAAGTCTACCCTagataaatttaattttgactaaaaaaaggataa
aaaatatACATTCTATGTGAAGCAAAGGTATGTTGCGTTTCTCGACACTT
GCAGATAAGATCTCCAATTTCTATCAGATAAGCCACGCTACTCACA Coding sequence (CDS) from alignment at sc0000076:723209..726254 >TCONS_00007439 ID=TCONS_00007439|Name=TCONS_00007439|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at sc0000076:723209..726254 (Clytia hemisphaerica)
TTACATGAAATGTAAAACAAGTAAGATTCCAAGCAGCATCGACGATTCTG
CTTTAGTAAGGCTCGCAgcgttggtgtttttattctCTGGACATTCTTTT
TCTGGTAAAGACAGCTTCATATCATTCCACCAGAAACAGGCGTTGGGAGG
ATATCCAAGTTTCTTGTACGTTTCCTCTGCGTGGTCACCCGCAACACCAT
CCCTTAAGATTTTCAACGCGTTTGCCTCTTTAAGAATTTCTGGACAAGGG
GGTAAATCACGTCGAATTTCATCTAGCTTCCAGAAATAATCAGCCATTGA
TAAGCTGTAATTCTGAACCCCGGAATTGTCAGCGATGTTTTTGGGTCCTT
TGTAAATGAAGTCATGATTCCAATTGCTCCACATATCTGTGTATGGTGTA
CCAATTTGTAATTCAGCAGATTTGCTACCATCTTTGATGAGAAGGATGAG
ATGAATGCGACGGTATCCACTATCCCGATATTTTCCATGTCCGGGACACA
TTCCGTAACAGGTGGTTTCTGTTATGTTAAAGTCGGTTGTGTCTTTTTCG
ATCTTTGATTTGATTCGAAGAGTATCATTGACTGTTTGGCATGTGAATCG
CATTCCAATAACATCAGTGAGATCATTAAAAGTGATATTCTTCCGTACCA
ACTTCTCTTGAATGCTCAAAGCTGATTTCAAACGACCTGTCAACACGGCA
GTTTTGTTTGCGATTTTTAGCAATGATTTTTGTGCTGATTCGAAAGCTGG
CTTGAAGCCCTcaacaaattttttgatttcttctaAGGTAGGCTGCTCTG
TTGACACAGAGTTTCGACGAAAACGGTGTTGACTTGAGAGATGGGAATGT
GTTTTGATCCAACTGTCGTACATTCTATCCCACGCGGTATCGTCATGCAA
CAAGTGATAATCCCTTGAATGACCAGCCTCGAACCCAGGGTCACCCAAAA
CATTCGACGAAAttgcaaaaaccaaaaacaaagtCTCTACCAACATCTTG
TTTGGAAGTTTATTGAAGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007439-exon-sc0000076-1491911889:723209..726254 | TCONS_00007439-exon-sc0000076-1491911889:723209..726254 | Clytia hemisphaerica | exon |
| TCONS_00007439-exon-sc0000076-1510915933:723209..726254 | TCONS_00007439-exon-sc0000076-1510915933:723209..726254 | Clytia hemisphaerica | exon |
| TCONS_00007439-exon-sc0000076-1575043694:723209..726254 | TCONS_00007439-exon-sc0000076-1575043694:723209..726254 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000076 | supercontig | sc0000076:723209..726254 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007685 | RelA_SpoT |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015969 | guanosine tetraphosphate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015969 |
guanosine tetraphosphate metabolic process |
Blast
The following BLAST results are available for this feature:
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