TCONS_00007424 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007424
Unique NameTCONS_00007424
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007424 ID=TCONS_00007424|Name=TCONS_00007424|organism=Clytia hemisphaerica|type=transcript|length=482bp
Taacttctttttattattttagccaaataagctaaataaaatatttttaa
gatggATAATTCTACTCAAAATGGAGCAGCTGCTTCAAAGGCAATGATAT
ATATTTGTGGTGAATGTCACtctgaaaatgaaatcaaaacaagagATCCT
ATACGTTGTCGAGAATGCGGCTACAGAATCATGTACAAGAAGCGAACAAG
AAGAATGATCGTCTTTGATGCTCGTTGAGATGCTCTGCTATtggtttttt
attcaaagatttttgtaaataaaaaaaggaagaaaggcTATCATACAATG
GTGCTGACCCAAATGCTTACTAACAACTTCTTACAAAGATAGCACCATTT
TGAAAGATGATTTAAAATATTCTATAAAATGGTTTTGTTAATTTCTCTAT
GAATTCTTGTTTTGCAAGTCTCCAGCAAGGAAAACAACTGCACCAATTAC
TACATCATTATTCAGTTTATTTTTAATCCCTT
Run BLAST on NCBI

transcript from alignment at sc0000076:451747..452228

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007424 ID=TCONS_00007424|Name=TCONS_00007424|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at sc0000076:451747..452228 (Clytia hemisphaerica)
AAGGGATTAAAAATAAACTGAATAATGATGTAGTAATTGGTGCAGTTGTT
TTCCTTGCTGGAGACTTGCAAAACAAGAATTCATAGAGAAATTAACAAAA
CCATTTTATAGAATATTTTAAATCATCTTTCAAAATGGTGCTATCTTTGT
AAGAAGTTGTTAGTAAGCATTTGGGTCAGCACCATTGTATGATAgccttt
cttcctttttttatttacaaaaatctttgaataaaaaaccaATAGCAGAG
CATCTCAACGAGCATCAAAGACGATCATTCTTCTTGTTCGCTTCTTGTAC
ATGATTCTGTAGCCGCATTCTCGACAACGTATAGGATctcttgttttgat
ttcattttcagaGTGACATTCACCACAAATATATATCATTGCCTTTGAAG
CAGCTGCTCCATTTTGAGTAGAATTATccatcttaaaaatattttattta
gcttatttggctaaaataataaaaagaagttA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004182XLOC_004182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007424-exon-sc0000076-1491911889:451747..452228TCONS_00007424-exon-sc0000076-1491911889:451747..452228Clytia hemisphaericaexon
TCONS_00007424-exon-sc0000076-1510915933:451747..452228TCONS_00007424-exon-sc0000076-1510915933:451747..452228Clytia hemisphaericaexon
TCONS_00007424-exon-sc0000076-1575043694:451747..452228TCONS_00007424-exon-sc0000076-1575043694:451747..452228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:451747..452228 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
86.94	80.9784	39.2869	34.9811	23.4837	14.9565	28.0691	26.7472	45.4469	47.8833	46.0817	38.2548	28.9537	28.5429	54.6067	47.9897	57.461	58.5957	19.4785	20.2383	44.4794	43.9425	78.9721	67.5976	12.976	15.3165	35.9952	26.0538	24.0881	28.6568
Blast
[Close]
BLAST of TCONS_00007424 vs. Swiss-Prot (Human)
Match: RPAB4 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.937e-25
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   52 MDNSTQNGAAASKAMIYICGECHSENEIKTRDPIRCRECGYRIMYKKRTRRMIVFDAR 225
            MD          + MIYICGECH+ENEIK+RDPIRCRECGYRIMYKKRT+R++VFDAR
Sbjct:    1 MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
The following BLAST results are available for this feature:
BLAST of TCONS_00007424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPAB41.937e-2570.69DNA-directed RNA polymerases I, II, and III subuni... [more]
back to top