TCONS_00007421 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007421
Unique NameTCONS_00007421
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007421 ID=TCONS_00007421|Name=TCONS_00007421|organism=Clytia hemisphaerica|type=transcript|length=686bp
ataaatattacaaaaatcataaatcaaaatatCTTAACCCTTCGATGATG
AATTTCATGCCTCATAAATATAATACAAGACATTATAAACTGAATAATAC
CtagaggtaataaaaaatacaaaggatGTTGAAAACACAAGAACGCCGTT
CCAAACGCAAATAAACGCATCAAAGAACCAAAGAACGATCTAACGCCGTC
AATGAAGCATGAGTTGTCTGGTGAAACAGTATCGAATAAGAGCACCTTGC
CAGCAGACTGTGCTTGAAAATACATCCAAGCTTTCGAAAACATGTGTGAG
GTCAAATAGACTACTTGACCAAGATACGATTGAATATTGATGTAGCCAGG
AATCAATAGATTAGCAAAGCTGAATAAAGTCATACTCAATGCCGTAGCGT
AACAAATGAAACTATTTTCCTGAAATACCTGCCATCGAATAAAGATTGCC
ATTAATATGTAAATAGCGGTTGAAGACAAGACGTTCATCCATGATAGAGA
ATCAACTTTCCAGTGAAAAAATGAGACAGCATACATAGCTATTAAACTGA
CCATAGTATTACAAGCATATCTGATGACACCGTATGATACACATAGAGAA
ATGATATCAACATGTAGGAGTTCCCTCCATTTCATTATCTGATGGTCGTG
AAAGACCTCGTCTTCAGTTTCTTCGTTGGTTATACT
Run BLAST on NCBI

protein sequence of TCONS_00007421-protein

>TCONS_00007421-protein ID=TCONS_00007421-protein|Name=TCONS_00007421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
SITNEETEDEVFHDHQIMKWRELLHVDIISLCVSYGVIRYACNTMVSLIA
MYAVSFFHWKVDSLSWMNVLSSTAIYILMAIFIRWQVFQENSFICYATAL
SMTLFSFANLLIPGYINIQSYLGQVVYLTSHMFSKAWMYFQAQSAGKVLL
FDTVSPDNSCFIDGVRSFFGSLMRLFAFGTAFLCFQHPLYFLLPLGIIQF
IMSCIIFMRHEIHHRRVKIF
Run BLAST on NCBI

transcript from alignment at sc0000076:247631..248316

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007421 ID=TCONS_00007421|Name=TCONS_00007421|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at sc0000076:247631..248316 (Clytia hemisphaerica)
AGTATAACCAACGAAGAAACTGAAGACGAGGTCTTTCACGACCATCAGAT
AATGAAATGGAGGGAACTCCTACATGTTGATATCATTTCTCTATGTGTAT
CATACGGTGTCATCAGATATGCTTGTAATACTATGGTCAGTTTAATAGCT
ATGTATGCTGTCTCATTTTTTCACTGGAAAGTTGATTCTCTATCATGGAT
GAACGTCTTGTCTTCAACCGCTATTTACATATTAATGGCAATCTTTATTC
GATGGCAGGTATTTCAGGAAAATAGTTTCATTTGTTACGCTACGGCATTG
AGTATGACTTTATTCAGCTTTGCTAATCTATTGATTCCTGGCTACATCAA
TATTCAATCGTATCTTGGTCAAGTAGTCTATTTGACCTCACACATGTTTT
CGAAAGCTTGGATGTATTTTCAAGCACAGTCTGCTGGCAAGGTGCTCTTA
TTCGATACTGTTTCACCAGACAACTCATGCTTCATTGACGGCGTTAGATC
GTTCTTTGGTTCTTTGATGCGTTTATTTGCGTTTGGAACGGCGTTCTTGT
GTTTTCAACatcctttgtattttttattacctctaGGTATTATTCAGTTT
ATAATGTCTTGTATTATATTTATGAGGCATGAAATTCATCATCGAAGGGT
TAAGatattttgatttatgatttttgtaatatttat

Coding sequence (CDS) from alignment at sc0000076:247631..248316

>TCONS_00007421 ID=TCONS_00007421|Name=TCONS_00007421|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at sc0000076:247631..248316 (Clytia hemisphaerica)
AGTATAACCAACGAAGAAACTGAAGACGAGGTCTTTCACGACCATCAGAT
AATGAAATGGAGGGAACTCCTACATGTTGATATCATTTCTCTATGTGTAT
CATACGGTGTCATCAGATATGCTTGTAATACTATGGTCAGTTTAATAGCT
ATGTATGCTGTCTCATTTTTTCACTGGAAAGTTGATTCTCTATCATGGAT
GAACGTCTTGTCTTCAACCGCTATTTACATATTAATGGCAATCTTTATTC
GATGGCAGGTATTTCAGGAAAATAGTTTCATTTGTTACGCTACGGCATTG
AGTATGACTTTATTCAGCTTTGCTAATCTATTGATTCCTGGCTACATCAA
TATTCAATCGTATCTTGGTCAAGTAGTCTATTTGACCTCACACATGTTTT
CGAAAGCTTGGATGTATTTTCAAGCACAGTCTGCTGGCAAGGTGCTCTTA
TTCGATACTGTTTCACCAGACAACTCATGCTTCATTGACGGCGTTAGATC
GTTCTTTGGTTCTTTGATGCGTTTATTTGCGTTTGGAACGGCGTTCTTGT
GTTTTCAACatcctttgtattttttattacctctaGGTATTATTCAGTTT
ATAATGTCTTGTATTATATTTATGAGGCATGAAATTCATCATCGAAGGGT
TAAGatattttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004179XLOC_004179Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007421-exon-sc0000076-1491911889:247631..248316TCONS_00007421-exon-sc0000076-1491911889:247631..248316Clytia hemisphaericaexon
TCONS_00007421-exon-sc0000076-1510915933:247631..248316TCONS_00007421-exon-sc0000076-1510915933:247631..248316Clytia hemisphaericaexon
TCONS_00007421-exon-sc0000076-1575043694:247631..248316TCONS_00007421-exon-sc0000076-1575043694:247631..248316Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007421-proteinTCONS_00007421-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:247631..248316 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04128	1.66817	0.842132	0.329558	0.200603	0.0792594	0.286869	0.626649	1.00281	0	2.03455	0.990691	0.593588	0.924671	1.30924	1.49566	0.0558344	0.343371	0.316257	0	0	0	0.511674	0.155062	0.558986	0.285075	0	0	0	0.0841079
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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