TCONS_00007420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007420
Unique NameTCONS_00007420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length960

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007420 ID=TCONS_00007420|Name=TCONS_00007420|organism=Clytia hemisphaerica|type=transcript|length=960bp
GAATTAAGCAgagaattttaatcaatttttcggATCataaattctgtcat
ttttagTGATTTGTAGTCATCTATCCAATTTCTCCAAATAATACCGGTTT
TATTTGTCGATCCTGATtcttcaaagaaatattttccgTTCAAATATAAT
TCACCACAGCCAGAGCCGGCTGTTCCTGTGTTACCCGTATACCAAAATGC
ACCGCGAGAACGCATTGCTGCACAATTTCTACCTTCCCTGAGATCATTGT
CTCGATCATGGCTGGTAAACTTAGAACCCCAATGTATCGCCATTGCGTCA
TGTCCACTTATTTTAATTGCACCGCTTTTGAgtttatattgattttcttc
GCTCTCAACTTCAAAGTAATCCCATCTTGTATGTTGCGTTTCGTTATTAA
ATCGGCTTCCGTGTAAATAAAATTCGTAACGTCCGTTTGAAGTCAATAAA
TGTAGAATTTCATTACCTAACCAATGTTCGCTGGAAACAGAACCGAACCC
GTTTTTATACTCATCCCAATTCCGAAGGAAATTTTCCACACCGTTAAAAC
GGCGCTGGAAAACAAGCCAACCACCACCTAAGACATCCATATTGCACCGG
ACATTTTTTAACATCCCATTAGGCAGATAGATGGGATAAACGCCAGTCTG
GTTAAAACCAGAATCTGACCAATCGTTGCACGATTCCTTAAGTAGTCTAG
TTGTAAACAAAGTAGATTCGCCTTTATGTGGCTTAAGCACCAAATGTGCT
TTATCGTAAAAACGACATTGGAAGTCATTTTGATTGAACTTCTCGATTAA
AAGTAACACACATTTTTTGTTGTAATGACATGCTGAAAAACAGCGCTTTT
CAGGAAAACGTTCAACTTCTAAAACTTGGATTGGCGGGTCCACTGGTATT
TGATTCACAGCGATTTTCGTCCAAAGTTTGCAGTCAATTCCATTTGGTTG
ATAATCCCAT
Run BLAST on NCBI

protein sequence of TCONS_00007420-protein

>TCONS_00007420-protein ID=TCONS_00007420-protein|Name=TCONS_00007420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
WDYQPNGIDCKLWTKIAVNQIPVDPPIQVLEVERFPEKRCFSACHYNKKC
VLLLIEKFNQNDFQCRFYDKAHLVLKPHKGESTLFTTRLLKESCNDWSDS
GFNQTGVYPIYLPNGMLKNVRCNMDVLGGGWLVFQRRFNGVENFLRNWDE
YKNGFGSVSSEHWLGNEILHLLTSNGRYEFYLHGSRFNNETQHTRWDYFE
VESEENQYKLKSGAIKISGHDAMAIHWGSKFTSHDRDNDLREGRNCAAMR
SRGAFWYTGNTGTAGSGCGELYLNGKYFFEESGSTNKTGIIWRNWIDDYK
SLKMTEFMIRKID
Run BLAST on NCBI

transcript from alignment at sc0000076:224164..225123

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007420 ID=TCONS_00007420|Name=TCONS_00007420|organism=Clytia hemisphaerica|type=transcript|length=960bp|location=Sequence derived from alignment at sc0000076:224164..225123 (Clytia hemisphaerica)
ATGGGATTATCAACCAAATGGAATTGACTGCAAACTTTGGACGAAAATCG
CTGTGAATCAAATACCAGTGGACCCGCCAATCCAAGTTTTAGAAGTTGAA
CGTTTTCCTGAAAAGCGCTGTTTTTCAGCATGTCATTACAACAAAAAATG
TGTGTTACTTTTAATCGAGAAGTTCAATCAAAATGACTTCCAATGTCGTT
TTTACGATAAAGCACATTTGGTGCTTAAGCCACATAAAGGCGAATCTACT
TTGTTTACAACTAGACTACTTAAGGAATCGTGCAACGATTGGTCAGATTC
TGGTTTTAACCAGACTGGCGTTTATCCCATCTATCTGCCTAATGGGATGT
TAAAAAATGTCCGGTGCAATATGGATGTCTTAGGTGGTGGTTGGCTTGTT
TTCCAGCGCCGTTTTAACGGTGTGGAAAATTTCCTTCGGAATTGGGATGA
GTATAAAAACGGGTTCGGTTCTGTTTCCAGCGAACATTGGTTAGGTAATG
AAATTCTACATTTATTGACTTCAAACGGACGTTACGAATTTTATTTACAC
GGAAGCCGATTTAATAACGAAACGCAACATACAAGATGGGATTACTTTGA
AGTTGAGAGCgaagaaaatcaatataaacTCAAAAGCGGTGCAATTAAAA
TAAGTGGACATGACGCAATGGCGATACATTGGGGTTCTAAGTTTACCAGC
CATGATCGAGACAATGATCTCAGGGAAGGTAGAAATTGTGCAGCAATGCG
TTCTCGCGGTGCATTTTGGTATACGGGTAACACAGGAACAGCCGGCTCTG
GCTGTGGTGAATTATATTTGAAcggaaaatatttctttgaagaATCAGGA
TCGACAAATAAAACCGGTATTATTTGGAGAAATTGGATAGATGACTACAA
ATCActaaaaatgacagaatttatGATccgaaaaattgattaaaattctc
TGCTTAATTC

Coding sequence (CDS) from alignment at sc0000076:224164..225123

>TCONS_00007420 ID=TCONS_00007420|Name=TCONS_00007420|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000076:224164..225123 (Clytia hemisphaerica)
TGGGATTATCAACCAAATGGAATTGACTGCAAACTTTGGACGAAAATCGC
TGTGAATCAAATACCAGTGGACCCGCCAATCCAAGTTTTAGAAGTTGAAC
GTTTTCCTGAAAAGCGCTGTTTTTCAGCATGTCATTACAACAAAAAATGT
GTGTTACTTTTAATCGAGAAGTTCAATCAAAATGACTTCCAATGTCGTTT
TTACGATAAAGCACATTTGGTGCTTAAGCCACATAAAGGCGAATCTACTT
TGTTTACAACTAGACTACTTAAGGAATCGTGCAACGATTGGTCAGATTCT
GGTTTTAACCAGACTGGCGTTTATCCCATCTATCTGCCTAATGGGATGTT
AAAAAATGTCCGGTGCAATATGGATGTCTTAGGTGGTGGTTGGCTTGTTT
TCCAGCGCCGTTTTAACGGTGTGGAAAATTTCCTTCGGAATTGGGATGAG
TATAAAAACGGGTTCGGTTCTGTTTCCAGCGAACATTGGTTAGGTAATGA
AATTCTACATTTATTGACTTCAAACGGACGTTACGAATTTTATTTACACG
GAAGCCGATTTAATAACGAAACGCAACATACAAGATGGGATTACTTTGAA
GTTGAGAGCgaagaaaatcaatataaacTCAAAAGCGGTGCAATTAAAAT
AAGTGGACATGACGCAATGGCGATACATTGGGGTTCTAAGTTTACCAGCC
ATGATCGAGACAATGATCTCAGGGAAGGTAGAAATTGTGCAGCAATGCGT
TCTCGCGGTGCATTTTGGTATACGGGTAACACAGGAACAGCCGGCTCTGG
CTGTGGTGAATTATATTTGAAcggaaaatatttctttgaagaATCAGGAT
CGACAAATAAAACCGGTATTATTTGGAGAAATTGGATAGATGACTACAAA
TCActaaaaatgacagaatttatGATccgaaaaattgattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004178XLOC_004178Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007420-proteinTCONS_00007420-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007420-exon-sc0000076-1491911889:224164..225123TCONS_00007420-exon-sc0000076-1491911889:224164..225123Clytia hemisphaericaexon
TCONS_00007420-exon-sc0000076-1510915933:224164..225123TCONS_00007420-exon-sc0000076-1510915933:224164..225123Clytia hemisphaericaexon
TCONS_00007420-exon-sc0000076-1575043694:224164..225123TCONS_00007420-exon-sc0000076-1575043694:224164..225123Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:224164..225123 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.236203	0.414604	0.32093	0.36631	0	0	0	0	0	0	0	0	1.28815	0.391538	0.0268248	0	0	0	1.70741	1.20864	0	0	0	0.0984881	0.0507202	0.0452666	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00007420 vs. Swiss-Prot (Human)
Match: TENR (Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 7.880e-39
Identity = 92/236 (38.98%), Postives = 123/236 (52.12%), Query Frame = -2 
Query:   30 STLFTT--RLLK--ESCNDWSDSGFNQTGVYPIYLPNGMLKN---VRCNMDVLGGGWLVFQRRFNGVENFLRNWDEYKNGFGSVSSEHWLGNEILHLLTSNGRYEFYLHGSRFNNETQHTRWDYFEVESEENQYKLKSGAIKISGHDAMAIHWGSKFTSHDRDNDLREGRNCAAMRSRGAFWYTGNTGTAGSGCGELYLNGKYFFEESGSTNKTGIIWRNWIDDYKSLKMTEFMIR 716
            ST FTT  R+    + C     +G   +GVYPI+L NG L     V C+M   GGGW+VFQRR NG  +F R W +Y+ GFG+V  E WLG + +H +TS GRYE  +   R   E     +D F VE   N YKL+ G+   +  D+++ H G  F++ DRDND+    NC AM  +GA+WY          C    LNGKY      S +  GI W +W     S+   E  +R
Sbjct: 1122 STAFTTGGRVFPHPQDCAQHLMNGDTLSGVYPIFL-NGELSQKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNVEDEFWLGLDNIHRITSQGRYELRVD-MRDGQEAAFASYDRFSVEDSRNLYKLRIGSYNGTAGDSLSYHQGRPFSTEDRDNDVAV-TNC-AMSYKGAWWY--------KNCHRTNLNGKY----GESRHSQGINWYHWKGHEFSIPFVEMKMR 1341
The following BLAST results are available for this feature:
BLAST of TCONS_00007420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENR7.880e-3938.98Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3[more]
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