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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007400 ID=TCONS_00007400|Name=TCONS_00007400|organism=Clytia hemisphaerica|type=transcript|length=3592bpRun BLAST on NCBI protein sequence of TCONS_00007400-protein >TCONS_00007400-protein ID=TCONS_00007400-protein|Name=TCONS_00007400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp MKSILKGSNSMSVLASDEHYNTEPDQKPSTKPLKEAPSIESHVSGKTLRNRun BLAST on NCBI transcript from alignment at sc0000076:431858..451392- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007400 ID=TCONS_00007400|Name=TCONS_00007400|organism=Clytia hemisphaerica|type=transcript|length=19535bp|location=Sequence derived from alignment at sc0000076:431858..451392- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000076:431858..451392- >TCONS_00007400 ID=TCONS_00007400|Name=TCONS_00007400|organism=Clytia hemisphaerica|type=CDS|length=6936bp|location=Sequence derived from alignment at sc0000076:431858..451392- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007400 vs. Swiss-Prot (Human)
Match: ARL4A (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=1 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 1.785e-42 Identity = 85/200 (42.50%), Postives = 124/200 (62.00%), Query Frame = 1
Query: 2296 MGNSIMHSIXXXXXXLFTKKLQIVMLGLDNSGKTTLLYRMKLKENIHETTPTTAFNVETIRPF----KNLKFVVWDTAGHDDVRPLWRAYIRKSDAMIFVIDSSDLERFDEARVELDQILTSKDSYGIPLLILANKQDLDNSISTXXXXXXXXXXXXXXTVNWHMHPTSGRYGDGLQEALLQLSDMITKKRKKSGQWNKR 2883
MGN + + N + IV+LGLD +GKTT+LYR++ E ++ T PT FN E I+ K + F WD G + +RPLW++Y R +D ++FV+DS D+ER +EA+ EL +I ++ G+P+LI+ANKQDL NS+S E+ K L + L ++ WH+ PT GDGL+E L +L DMI K+RK Q K+
Sbjct: 1 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVN-TVPTKGFNTEKIKVTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQQKKK 199 The following BLAST results are available for this feature:
BLAST of TCONS_00007400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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