TCONS_00007392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007392
Unique NameTCONS_00007392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007392 ID=TCONS_00007392|Name=TCONS_00007392|organism=Clytia hemisphaerica|type=transcript|length=492bp
AAATTgacaacagaaaaaataaatataaatattaaaatcatAATTAAAAT
CAAGTGGCAAGATGACACCTGGAATTGATAACTTACCTTCATTGAGCCCT
TACTCAACTTTTGGTTCCAAATTTACTCAATCGTTTCAACAATTTGTGAA
AGATATAGCAGATTCGAAGTCTAAAACGgAGGAAGATCGTATCATAAGCT
TAGAAGTGGAAAGATTGAAAATTGCCATTCTAAAGCCGGTCAATTCAGAG
AAACAACGAAAAGAACAATTTGTCAAGCTTATTTATTGTGATATGCTTGG
TAAAGATGTATCTTTTGCCAACATGGAGACTGTAAAAAATGCTCAGCAAC
AAGATTTGATGTACAAAAGAGTCTcATATACAGCTTTGGGATTGTTTTTG
AATGAAGAGAATGAAACGGAACGTATGATGAACATGAGCTCCATACAAAG
AacgatgttatcgtccgttacaatgATAGGCGGGAAATATGG
Run BLAST on NCBI

transcript from alignment at sc0000076:46025..50900-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007392 ID=TCONS_00007392|Name=TCONS_00007392|organism=Clytia hemisphaerica|type=transcript|length=4876bp|location=Sequence derived from alignment at sc0000076:46025..50900- (Clytia hemisphaerica)
AAATTGACAACAGAAAAAATAAATATAAATATTAAAATCATAATTAAAAT
CAAGTGGCAAGATGACACCTGGAATTGATAACTTACCTTCATTGAGCCCT
TACTCAACTTTTGGTTCCAAATTTACTCAATCGTTTCAACAATTTGTGAA
AGATATAGCAGATTCGAAGTCTAAAACGGTACATTGCTTTTTTTTTTGTT
TATGTTTATGATAATATCTACAATCACCACCGTAATATTTGGCACTAAAG
GGGAATTCGCTCTTTTAAAACCACTAGTGAATTTAAGTGCTTTAAAGAAA
GGTTGGAAAGTAGAGTATTAGCAGGAGACTTTTAAGACCTTGGACCTTAG
GATCTCAGGATCTAAAAGCTCAATAAAGTTCCATCAAGGCTGAGGATATA
GCCTGGAAGCCACTCTGCCCCTTCCAAATCGAAAAATCCAATGAGAACAA
AGTGAAATTATTGTCAATATATTTCAAGGGTGATTGTAGCTATATTATTT
CTTGTTTTTTGATATTACTTAATTCTTTTTGGGATTATACTTATTTTTCA
ATGCACCTTTCCTGTAATTTGCAAAACAGATGCGCGCCCATTATTCTGCT
GCTCTCCACCGTTTGGCCTCTGGAAGTAAACAAACCCGTTTTTGCCTGCA
TTTCCTTAGGGAAAGTTGGTTTTTTGAGCTTTTCTTAAAGTTCTGTCTAT
CAAAATCCCCTCATGATATTATACCACCCTGAAAAACTTTTTCCAAAAGG
AGATTGGTATCAAAAGTTAGAAGCTGTAAATTCACTTTCCCTAACCCCTT
TTGGCCAAAAATGCGTTCCTTTACCTCCCAAACAATTTTATACACAATGG
TGGAGCGCACATTTTCCTGGGCCATTTCTGAGAAGTTTGAATTACAGGAA
AGGTGTATTCTCCCATTTAAATTCAAAAACTTCTGTTTCGAAATTCATGA
GTATAGCCTCAATTCCATTTCATTGAAGTTCTATAACACAGTTACTGTAT
TATATTTAAAATAATTTACTATAAAAAATTCCATCAGTTTTGTTTTCTTG
TCTTTTTTAGGAGGAAGATCGTATCATAAGCTTAGAAGTGGAAAGATTGA
AAATTGCCATTCTAAAGCCGGTCAATTCAGAGGTGAGTTTTGATTGCAAT
CACATGGAATCAGTTTTCTCTTTTATTGCTGTTGTGTTTATTGCATCTAA
GTTACCTTACAATTTTCTTTCTTTGAACCTATCTACTCACTAACTCTTAC
AGTAAATGACGATGCAAAATTTGCATTCAATTTTTTCTTTACATGTTTTT
TTTATAAGCATAACGTAATTTATAAGCATACCAAGACCTGAATTTGTCTA
AAAAATAAGCATATTACAAGCATATTACTGAGCTTGCTTTTGAGGTGTGN
CATCCTATAGAGAAGGTCTGGAGAAAGTTTCAGCTAGATCTTATTTTTTT
CCTACAAACAGCCTGTATTTTTGTAACACGACCACACTAATAGGTGGAAA
AGAAGTCGTTGTAATGCAATTGTCGTTTAAAAAAATACAAGCGTAAATGC
GGCAATCGTTCACAACTTTCCTGAAAAATCTTTGTGTCATTACTTATTTC
CCTATCCTCATTTATAGCAACGACAGATTTTGGAAAAATTGGAGACTCGA
ATTTTTCGGAAAAATAAGCATATGATAAACATAGTTCGAGCCTGAGTCTA
AAATATCTCTAAGCATAACTGAGCTTGTTTTCCGAAAAACATATGCTTAT
AAAAAAAACATGTATAAGAAAAAAGTATACAAGAACATTAGGAACAAAGA
ATCAAGAACATTAGTAACAAAGAATTCTTTTGGAAAATTGTTCTTAAAAA
AAAATACTCTTAAAATACTGAAAATAAGAATATTTTTAAGAATATTTGAG
GCTTAAGAACATCCGAGGGCTTCCACAATTTTTGATGTTCATATAAAAAT
AAACTGTGTGTAAACCGTCTTCTGTAACAAATTTTTTAATTTTCAAATGA
ATTGTTTTGTTAGAAACTTAATCAAAATTCATCAACAATTCTTTCGAAAT
CTTCAGAGTTTTGCTTTTTGTTTTGTAGAAACAACGAAAAGAACAATTTG
TCAAGCTTATTTATTGTGATATGCTTGGTAAAGATGTATCTTTTGCCAAC
ATGGAGACTGTAAAAAATGCTCAGCAACAAGATTTGATGTACAAAAGAGT
CTGTAAGTTTGGAAATTCGGAACTGCCTGGAAACTACAATTCAAGGCACG
TCAAGGCACATCAAAGAAAGGTTGATTATGATAAGAGCAAGAACTGGCCA
GAAAGGTACTCCCAAACAAAGGAAAACTACTAGGAGTTACCTTTCTGGCC
AGTTCTGGCTCGTATAATTAACTTTTCCTTGACGAACCTTGATTTGAAAT
TACATCTACTTCAATGCTTTATCCCAAAGTTTTAGGGCTACCTGATAGAA
TCACCACTTTTGGGGAACCTTAGACTCTTTTTTATTTAGATTGTCAAAAA
ATCAGCTTTTTTGTTTATTTTTCTCTCTGAATTCAGGCTTGCTTTGCATC
TCATATTGTACATTGAAACTTTTTTTCAATCTTTTTATTTTTATAGCATA
TATATAGCATACAGCTCTAATAGCTCTAACCACTATTGTATAGTTAGAAA
ATCAACTTTTGTTCGACATACCTTGAATTGAAATTACATCTCCTCCTTTA
TCCCAAAGTTTAAAGTCTACCTGATAGAATCACCTCTTTGTGGAACCTTT
TAGACTCTTTTATATTTTAATTGTCAAACAACTGGGCTTTTTATGCTTAT
GTGTCTCTCGTGGTTTAGCTGCTCATACATTTAAACATTTTTTTTTCAAT
CTTCTTTTTTTATCGCATGTACAACTCTAATCTTACTATACTAAATGAGT
TTATGAAAAATGTCTGTAACGCTAGCCCAGTTACATATGTTAAGGTTTCT
AAAATTTGAACGCCGCGGCTGGAAAACCTATCCACCTTCGATACAAAAAG
TCTCTCGCTAAGTTTGACAAGCGTAGAAAACTCGAATTAGAGAAGACTCT
ACACTGCTATTTGTAAACGAAAAAAGTTCTGACGTCAATTTCATGAAAAA
GTACTGCGACGTCACAAAGTTTCAAATAAAAAGGTGTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGATGTCAGGCATTAACC
CACATTATAGTATTTTAAAGGCTTTTGATGTGCAAGCAAAACCGTTAACC
GGCGTTTGCGACGACGGGAACCGTCTAGTAACCACTATTGTATTATTGGA
AATCAATTTTTCCTTGACGTGCCTCGAATTGAAATTACATCTCCTTCAAG
GCTTTATCCCAAAGTTTAAGGTCTACATGATAGAAATGAGGAGCTTTAGA
ATCTTTTTTATTTAGATTATTTATTAATAATCTGCTTCTTCTATTTTTCT
CTCATCCTTGATGGTTTGGCATCTCATATTGTACATTGAAACATTTTTTT
TTAATCTTTTTATTTTTACAGCATATACAGCTTTGGGATTGTTTTTGAAT
GAAGAGAATGAAACGGAACGTATGATGAACATGAGCTCCATACAAAGAGT
ACGTCAAATTTTTACAGAAAAATAAAGAAAGTTTCATTTATAATTCCTGC
GACTCATGACATAATCTTTCATACGGAGGAAACACCCGACAAACACCGGG
CGTTTGCCACAGGTTTTGAACTTAAACAATGAAACTGGTTGAAAACACCC
CGTGGGTTTTGTGTGTTTCCGTAAAAATGATTACGTCATGAATGTCAAGA
ATTCAACAGTTATCCATATTTATCACCTTTTTTAGACGATGTTATCGTCC
GTTACAATGATAGGCGGGAAATATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004158XLOC_004158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007392-exon-sc0000076-1575043694:50723..50900TCONS_00007392-exon-sc0000076-1575043694:50723..50900Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1575043694:49769..49840TCONS_00007392-exon-sc0000076-1575043694:49769..49840Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1575043694:48699..48822TCONS_00007392-exon-sc0000076-1575043694:48699..48822Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1575043694:46303..46379TCONS_00007392-exon-sc0000076-1575043694:46303..46379Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1575043694:46025..46065TCONS_00007392-exon-sc0000076-1575043694:46025..46065Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1510915933:50723..50900TCONS_00007392-exon-sc0000076-1510915933:50723..50900Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1510915933:49769..49840TCONS_00007392-exon-sc0000076-1510915933:49769..49840Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1510915933:48699..48822TCONS_00007392-exon-sc0000076-1510915933:48699..48822Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1510915933:46303..46379TCONS_00007392-exon-sc0000076-1510915933:46303..46379Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1510915933:46025..46065TCONS_00007392-exon-sc0000076-1510915933:46025..46065Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1491911889:50723..50900TCONS_00007392-exon-sc0000076-1491911889:50723..50900Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1491911889:49769..49840TCONS_00007392-exon-sc0000076-1491911889:49769..49840Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1491911889:48699..48822TCONS_00007392-exon-sc0000076-1491911889:48699..48822Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1491911889:46303..46379TCONS_00007392-exon-sc0000076-1491911889:46303..46379Clytia hemisphaericaexon
TCONS_00007392-exon-sc0000076-1491911889:46025..46065TCONS_00007392-exon-sc0000076-1491911889:46025..46065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:46025..50900 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000968671	0.0637354	0.755645	0	0.821668	0.327992	0.411338	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00007392 vs. Swiss-Prot (Human)
Match: AP4E1 (AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=AP4E1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 7.019e-17
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 2 
Query:   68 PGI--DNLPSLSPYSTFGSKFTQSFQQFVKDIADSKSKTEEDRIISLEVERLKIAILKPVNSEKQRKEQFVKLIYCDMLGKDVSFANMETVKNAQQQDLMYKRVSYTALGLF 397
            PG+   N P   P +   S F+      V+ I    SK EE+++I  E+  LK  +  P  + K  KE  V+LIYC+MLG D SF  +  +K AQQ +L+ KRV Y A+ LF
Sbjct:   13 PGLFLQNQPGGGPAAAKAS-FSSRLGSLVRGITALTSKHEEEKLIQQELSSLKATVSAPTTTLKMMKECMVRLIYCEMLGYDASFGYIHAIKLAQQGNLLEKRVGYLAVSLF 123
The following BLAST results are available for this feature:
BLAST of TCONS_00007392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP4E17.019e-1739.29AP-4 complex subunit epsilon-1 OS=Homo sapiens GN=... [more]
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