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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007373 ID=TCONS_00007373|Name=TCONS_00007373|organism=Clytia hemisphaerica|type=transcript|length=813bp
AAGAAATCGTGATAGAAACGCTTACATATCATGTTTCCTACTCTTCTTGG
CTGGCCTGGAAACGAGCGCGGTCTCAGTGGTCATGCTATACTACATACAA
GACCGTTTCAAATTCGAGTTGGATCAAACACGCATGTATTTTAGTATTGC
TGAGATGTTCAACGCTATTGGTCAAATATTGGGTGGTATTTTCATCGGAC
GATATACAGACCGGACTAGGAATTTGAGATTGGTAGTTTTGGTGAACCTA
TGGGCATCTGTTATTGGGAATCTAATGTATGGGCTACCGTATCATATCTT
GATGATTATTGTTGGTCGATTTATTTGCGGACTGAATGAATCTCTACAAG
TAGCTTTTAGTGgagagtttAAACGATGTTACAAAGACAATGAATTAATA
CAAATTCTTGGTTGGAATGAGATCGGTTATTCTATTGGTTACACTTTAGG
CCCTGGTGTTCCTGTATTCTTTTCCTGGATTCACCTGCACATAGGCTCAT
GGAAAATTGATAAGTACAATGCAACGCATGTCTTTATTGTATTGATCATA
CTTTGCCTGTATGTTTATATTTGGTTTAGATTGAAAAATTCATCGCAGGA
GTTAGATAAAATGAAAAGCAAGTTCGAAGCGGTGGCAAATTTGAATGAGA
TTCCTGAAGGAAGTCAATGTAAAACTACTTATTCAGATATTGAATGTCCA
AAAGAGGCGGAAAACTTGGATCAGATTTCTCAAGGAAGGCAATGCAAAAC
TACTCATCAAGCTATTGAATCTCATCCAAAAACGATTGTAAAATTTGATG
TAAAAGAGGTGCA Run BLAST on NCBI protein sequence of TCONS_00007373-protein >TCONS_00007373-protein ID=TCONS_00007373-protein|Name=TCONS_00007373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
RNRDRNAYISCFLLFLAGLETSAVSVVMLYYIQDRFKFELDQTRMYFSIA
EMFNAIGQILGGIFIGRYTDRTRNLRLVVLVNLWASVIGNLMYGLPYHIL
MIIVGRFICGLNESLQVAFSGEFKRCYKDNELIQILGWNEIGYSIGYTLG
PGVPVFFSWIHLHIGSWKIDKYNATHVFIVLIILCLYVYIWFRLKNSSQE
LDKMKSKFEAVANLNEIPEGSQCKTTYSDIECPKEAENLDQISQGRQCKT
THQAIESHPKTIVKFDVKEV Run BLAST on NCBI transcript from alignment at sc0000076:245662..247536+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007373 ID=TCONS_00007373|Name=TCONS_00007373|organism=Clytia hemisphaerica|type=transcript|length=1875bp|location=Sequence derived from alignment at sc0000076:245662..247536+ (Clytia hemisphaerica)
AAGAAATCGTGATAGAAACGCTTACATATCATGTTTCCTACTCTTCTTGG
CTGGCCTGGAAACGAGCGCGGTCTCAGTGGTCATGCTATACTACATACAA
GACCGTTTCAAATTCGAGTTGGATCAAACACGCATGTATTTTAGTATTGC
TGAGATGTTCAACGCTATTGGTCAAATATTGGGTGGTATTTTCATCGGAC
GATATACAGACCGGACTAGGAATTTGAGATTGGTAGTTTTGGTGAACCTA
TGGGCATCTGTTATTGGGAATCTAATGTATGGGCTACCGTATCATATCTT
GATGATTATTGTTGGTCGATTTATTTGCGGACTGAATGAATCTCTACAAG
TAGCTTTTAGTGGTGAGACTTTTCAATTTATTTCTGAATAAGTCAAGACA
TACTCCTTCTCAAGTGAAAATAGGCTTTAACCTAAGTTGATGATCTctgc
acccccttctcacagacccactgggttcccttcccactggaaaaaaattt
ccaaaatatcgtcccgtCGGAAAATTACTCTCAAATTGCTGTCCCTGCTG
aaagtaatcaaataaaccaatcctcattgcaaaatattatgctatttttt
cttttaaacaaaagaaagccaTAAAAATATATTGGAATATCAACCCTCAT
TGAGTTTCAGTCAGTTATTTTTATCCCtaccactggctgaaaaaatccta
ctgggtctgtgagaagttgGAGATCTCTACACAGGATAGTAGAATCAGAA
CATAAAAATGAACAAAGGCCTCTTTTCTTAACATACTGCCTATAAAAATT
GTACTCTCTTAGATAGCACATAAAGCTTTATGACTTTAGCCAGTTATTGT
GCGTGGCTAGGATTttaaagttataattttctgaCTAACCTTGACTAAAC
CTCGCTATTCAAAACCTTCCAAAGTCCACAGCTGGACGAGTCTGATCAAA
CCTCTATATTTCTATATAGGTTCTGTATAATAGAGATACCACTACTATAC
AATAAAGCttctactttaatcggattaattttcgcaagattaaatttcgc
gatttcgcgaatttttgccattttcgcgaaattaaaactcgcgaacacgc
gcgagattcctgattcgcgaaattaaatccaccacaaaacttttaaaatt
gtatttttggcggagaaactagttccaagtctccatttatggcaaaaaaa
tggctattttcagctgttttctggcttattcacgaaattaaatccacgcg
aaatatttcaaaattctgactcgcgaaattaaatccagaaaatttcgcga
aatttaatccggttaaagtataTGATATATCTagtagaaaaaactttttt
cgtttagcCAGTATATTTATCATCACGAATACACCGGGTTATGTATTGAA
CTTCaacttctcttttttttccaggagagtttAAACGATGTTACAAAGAC
AATGAATTAATACAAATTCTTGGTTGGAATGAGATCGGTTATTCTATTGG
TTACACTTTAGGCCCTGGTGTTCCTGTATTCTTTTCCTGGATTCACCTGC
ACATAGGCTCATGGAAAATTGATAAGTACAATGCAACGCATGTCTTTATT
GTATTGATCATACTTTGCCTGTATGTTTATATTTGGTTTAGATTGAAAAA
TTCATCGCAGGAGTTAGATAAAATGAAAAGCAAGTTCGAAGCGGTGGCAA
ATTTGAATGAGATTCCTGAAGGAAGTCAATGTAAAACTACTTATTCAGAT
ATTGAATGTCCAAAAGAGGCGGAAAACTTGGATCAGATTTCTCAAGGAAG
GCAATGCAAAACTACTCATCAAGCTATTGAATCTCATCCAAAAACGATTG
TAAAATTTGATGTAAAAGAGGTGCA Coding sequence (CDS) from alignment at sc0000076:245662..247536+ >TCONS_00007373 ID=TCONS_00007373|Name=TCONS_00007373|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000076:245662..247536+ (Clytia hemisphaerica)
AGAAATCGTGATAGAAACGCTTACATATCATGTTTCCTACTCTTCTTGGC
TGGCCTGGAAACGAGCGCGGTCTCAGTGGTCATGCTATACTACATACAAG
ACCGTTTCAAATTCGAGTTGGATCAAACACGCATGTATTTTAGTATTGCT
GAGATGTTCAACGCTATTGGTCAAATATTGGGTGGTATTTTCATCGGACG
ATATACAGACCGGACTAGGAATTTGAGATTGGTAGTTTTGGTGAACCTAT
GGGCATCTGTTATTGGGAATCTAATGTATGGGCTACCGTATCATATCTTG
ATGATTATTGTTGGTCGATTTATTTGCGGACTGAATGAATCTCTACAAGT
AGCTTTTAGTGgagagtttAAACGATGTTACAAAGACAATGAATTAATAC
AAATTCTTGGTTGGAATGAGATCGGTTATTCTATTGGTTACACTTTAGGC
CCTGGTGTTCCTGTATTCTTTTCCTGGATTCACCTGCACATAGGCTCATG
GAAAATTGATAAGTACAATGCAACGCATGTCTTTATTGTATTGATCATAC
TTTGCCTGTATGTTTATATTTGGTTTAGATTGAAAAATTCATCGCAGGAG
TTAGATAAAATGAAAAGCAAGTTCGAAGCGGTGGCAAATTTGAATGAGAT
TCCTGAAGGAAGTCAATGTAAAACTACTTATTCAGATATTGAATGTCCAA
AAGAGGCGGAAAACTTGGATCAGATTTCTCAAGGAAGGCAATGCAAAACT
ACTCATCAAGCTATTGAATCTCATCCAAAAACGATTGTAAAATTTGATGT
AAAAGAGGTGAGAAATCGTGATAGAAACGCTTACATATCATGTTTCCTAC
TCTTCTTGGCTGGCCTGGAAACGAGCGCGGTCTCAGTGGTCATGCTATAC
TACATACAAGACCGTTTCAAATTCGAGTTGGATCAAACACGCATGTATTT
TAGTATTGCTGAGATGTTCAACGCTATTGGTCAAATATTGGGTGGTATTT
TCATCGGACGATATACAGACCGGACTAGGAATTTGAGATTGGTAGTTTTG
GTGAACCTATGGGCATCTGTTATTGGGAATCTAATGTATGGGCTACCGTA
TCATATCTTGATGATTATTGTTGGTCGATTTATTTGCGGACTGAATGAAT
CTCTACAAGTAGCTTTTAGTGgagagtttAAACGATGTTACAAAGACAAT
GAATTAATACAAATTCTTGGTTGGAATGAGATCGGTTATTCTATTGGTTA
CACTTTAGGCCCTGGTGTTCCTGTATTCTTTTCCTGGATTCACCTGCACA
TAGGCTCATGGAAAATTGATAAGTACAATGCAACGCATGTCTTTATTGTA
TTGATCATACTTTGCCTGTATGTTTATATTTGGTTTAGATTGAAAAATTC
ATCGCAGGAGTTAGATAAAATGAAAAGCAAGTTCGAAGCGGTGGCAAATT
TGAATGAGATTCCTGAAGGAAGTCAATGTAAAACTACTTATTCAGATATT
GAATGTCCAAAAGAGGCGGAAAACTTGGATCAGATTTCTCAAGGAAGGCA
ATGCAAAACTACTCATCAAGCTATTGAATCTCATCCAAAAACGATTGTAA
AATTTGATGTAAAAGAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007373-exon-sc0000076-1491911889:245662..246023 | TCONS_00007373-exon-sc0000076-1491911889:245662..246023 | Clytia hemisphaerica | exon |
| TCONS_00007373-exon-sc0000076-1510915933:245662..246023 | TCONS_00007373-exon-sc0000076-1510915933:245662..246023 | Clytia hemisphaerica | exon |
| TCONS_00007373-exon-sc0000076-1575043694:245662..246023 | TCONS_00007373-exon-sc0000076-1575043694:245662..246023 | Clytia hemisphaerica | exon |
| TCONS_00007373-exon-sc0000076-1491911889:247086..247536 | TCONS_00007373-exon-sc0000076-1491911889:247086..247536 | Clytia hemisphaerica | exon |
| TCONS_00007373-exon-sc0000076-1510915933:247086..247536 | TCONS_00007373-exon-sc0000076-1510915933:247086..247536 | Clytia hemisphaerica | exon |
| TCONS_00007373-exon-sc0000076-1575043694:247086..247536 | TCONS_00007373-exon-sc0000076-1575043694:247086..247536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000076 | supercontig | sc0000076:245662..247536 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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