TCONS_00007372 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007372
Unique NameTCONS_00007372
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007372 ID=TCONS_00007372|Name=TCONS_00007372|organism=Clytia hemisphaerica|type=transcript|length=736bp
GTTTTTACAAGACGGTAGAAAAACCACAAGTGTTTGTGGACTGTGTCGGA
AAAGGTGTTGCATCTCCTATCATTGAATCAGTGAAAAAGAATCCCAATTT
TGAAGAACCATACAATAAATTTGAATTGGTAAGAGTTACAAGTTTTTGGA
TCTCCTTCCTTCTTGTTCTGTTCATagtggcccttcgtggaaacaattct
ccagctgcctaaaagcttttgaatatttcggagcatgccacttaaaacat
atgttattatttttattattattattaatccTTTGTCCGTTGGTCCCTTT
TTTTAATCTGATACCAGTTTTTCCCGAGATCGTctcgttagttttttttc
tgactttttgcaccGATTTACAAGatggcaatacccaaaatgtgtTCCAA
AAAAGTTCCATTTTCGattaaaaagttgtttttcGGTCAAAAATTCCGGA
ACTATGCCGAGAAGACcaggttttttggattttctggagatttatttaga
tttttctgattttttactcAAAGATACATATTAGCAATACAATCACCATA
GCCTAGCTAACTAAGCCCGTTTTCACACGCAGTCAGAGAAAGGTCCCATT
CTGAagaattaagggctctgaccatagtgaatttttcatagttgccgtgt
ttaaaatgtgttttctgactgatgtaaccaacaaaactatggcatgttat
acattttctgttagacaaactattcctgaatctgaa
Run BLAST on NCBI

transcript from alignment at sc0000076:240614..241349+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007372 ID=TCONS_00007372|Name=TCONS_00007372|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at sc0000076:240614..241349+ (Clytia hemisphaerica)
GTTTTTACAAGACGGTAGAAAAACCACAAGTGTTTGTGGACTGTGTCGGA
AAAGGTGTTGCATCTCCTATCATTGAATCAGTGAAAAAGAATCCCAATTT
TGAAGAACCATACAATAAATTTGAATTGGTAAGAGTTACAAGTTTTTGGA
TCTCCTTCCTTCTTGTTCTGTTCATagtggcccttcgtggaaacaattct
ccagctgcctaaaagcttttgaatatttcggagcatgccacttaaaacat
atgttattatttttattattattattaatccTTTGTCCGTTGGTCCCTTT
TTTTAATCTGATACCAGTTTTTCCCGAGATCGTctcgttagttttttttc
tgactttttgcaccGATTTACAAGatggcaatacccaaaatgtgtTCCAA
AAAAGTTCCATTTTCGattaaaaagttgtttttcGGTCAAAAATTCCGGA
ACTATGCCGAGAAGACcaggttttttggattttctggagatttatttaga
tttttctgattttttactcAAAGATACATATTAGCAATACAATCACCATA
GCCTAGCTAACTAAGCCCGTTTTCACACGCAGTCAGAGAAAGGTCCCATT
CTGAagaattaagggctctgaccatagtgaatttttcatagttgccgtgt
ttaaaatgtgttttctgactgatgtaaccaacaaaactatggcatgttat
acattttctgttagacaaactattcctgaatctgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004146XLOC_004146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007372-exon-sc0000076-1491911889:240614..241349TCONS_00007372-exon-sc0000076-1491911889:240614..241349Clytia hemisphaericaexon
TCONS_00007372-exon-sc0000076-1510915933:240614..241349TCONS_00007372-exon-sc0000076-1510915933:240614..241349Clytia hemisphaericaexon
TCONS_00007372-exon-sc0000076-1575043694:240614..241349TCONS_00007372-exon-sc0000076-1575043694:240614..241349Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:240614..241349 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.658188	0.757137	0.765579	0.952519	0.37901	0.149588	0.558063	0.352626	0.247588	0.148121	0.586302	0.145447	0.0996429	0.0502638	0.0450514	0.130584	0.10704	0.173674	0	0.169092	0.085556	0.127661	0.0904884	0.0832724	0.0767444	0.205469	0.230906	0.106214	0	0.209435
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007372 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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