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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007359 ID=TCONS_00007359|Name=TCONS_00007359|organism=Clytia hemisphaerica|type=transcript|length=3892bp
atatatttttcagcataaagaaaaaagaataaaaataaactaTGTCATCA
GAAGCGAGTAGCTCAACAAGTCAGACAACACAACGTGGTCCACTGAAACC
CATCACGCACGAATTGGCTTTCTTAGAAACCTTTTTTTATTCGATTGCAC
AATTTCAATTCGATCGTGCTCACGAGTTTGCCGATAAAGAACGTGGCACT
CCGGACCCTTCGAAACAGTTATGGAACGGCTTACTCAACTCGCTTATAAC
TTTCGCCAATGCCGAGAAAAGTTATTTTGCGATGGCTTTTATTGAGAAAC
GAATCTTTAACCGTACTTTGAAACCTGTTTATACTCAGCTCTCCACAGAC
CTCTTCACATTGATCGATGCTGCGAATGAAGTTCATGATAGCGAGGCACT
AGCCTTAGAGCTATGTAAACAAATGAAACGGTTCACACAGGCCAGGCTAG
AGATGATTGATTTTTACGAATACTTTATGAAGTGTAAGTGGAGCCACGTG
CGAAACACGAAGGAAATCATTACCACCATTCAGAAGATTAACACAATGTT
CACCAAAGATTTCCACCATCCTGTATTGGATCCTGTTAAAACGGGATTCA
ACTTTGAAACCGAGATTCTGAACACGTTATTGCAAGCAGAACTCAAACTT
TGTGAATGGGAGTTTTTAGAATCACTGCTTACTTTACGAGAGTGTCAATC
AAAGCTTCATGCATGGAGATTGCTGTCCCCATCCAATTCAGTGAAAGAGC
AATTGTTGGCTTCCTTTACCTATAAATCTTTCTTCATGAGAGGTGCCAAG
AAACAGATCGATACACCAGCGTTATACCAATGGTTGCAACTCTTTCATCT
TCACATGTTATCCAAATTCAGTTTTTATTTCTATTCCACACTTCTTCATG
GTCAAGCTGCTTCGCCGGATCTGAAAGGTTCCTTAACCAAGAACAGTATC
GATTACGTTGCCAAGATTACCACATTTCAACGTAAAACAGATGCTCATAG
TATTTCTCTTGTCCTTGATACCACCACCAAGGAGAAAGTGTATAAGGGAC
ACGGATATTTCATGGATAACACACTGGTTAATGCACCCACTGGAATCAAC
TCATATCCAAGTATTGTCAATATTCCACCTGAGAATGTGCCAGCAACTGC
TCACTGGCCCAATATCATCATCATGTTGACTGATCGAACAAATGATTTGA
ATGCTACTGATAAGATTGGTTATTTACATGACACAAGGTTGGAGAGTACA
TACTTCTTGATCAAAGTTGATGTTCGAATGTATTTGGTGCTcatttttaa
gatgaaaaagaaGGAACGTGACAGTTACATACAAAACTTCTTGTTAGAAA
TGAGAGCCAATCTGGGACACGATAAATTGTTCCAAATGTTAAAACCAAAT
CAATCTAAACTCTTTAATTATCAAAAGAATTGAGATTATTTTCGTaaatt
cagttaattcacattctcGAAGCCTCGAGGGTGGGGTGGATTACCCTTGC
CAAAaatgactttgaaaattttgccaaatttgagaaaaaaagtgattcca
aaatttccttaaaatctcccactttttttctaaattcaaattccctcaaa
aaggtaccctacgcgggactgatttttctattcttATGTTTTTACGACCC
TATGTAGAACTTGTGGAGGTGAAAAAgttaccctgaccagcggcacatct
CCGTACCCCTTTTTGCCAAAGTACCCCCCCCCCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCCCCCCCCCCCATCTGGTCAAGACATTCATTTTatattctaaatttt
tatttttaatattttacctCCGTGTGAGAGAAGGCTTTTTAGACAAGCTG
TAAAACTTTGTGAAGACTACAAGTCAACTAGTTATTAGTTGCGgatcgaa
attttaagattatttttaatataagcatctactttgcTATATATAAACTC
ATGATAGCGGGAATAAAGATTAGTTTCAACGGtctttttacaaaatgaat
taactttttgcaaagtataCATGATGTGTGACTATTTACAataattcatt
tcaaaattccgAATTAAAAGAGTTATAGCTTGGCATTACGTTTTTGGctt
taatcgcacgatgggttattttttcttatttggcacgccctcaaagagag
caattaatcgttaattgcatcctttagagagcaattaatcgttaatcaca
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Nattaatcgttaatcacactctccaatgcggcgccaatgtttacaaaatt
gattttaatgttttttcttacattttttttgcatcgaacgttttaattac
attcaaaatttattttgtgagaaagaaaatcaataaacaacaataaaagt
aAGACACAAAGAGAAGAGAAAagtataaaactctcagtgtaatttctgta
atttactttcctaactgagaaaaagtagtgaaagccattgtgcgattagc
tcgtaatcacataataactcgtacaattcgaaaattgcactcgttatcat
gtgattacatatactaattatTAAATTTTCTCAACGAAAATTAACATTCC
AGCCAATTCTAAAGTGCCGTGAagccaaataaaaaaaatttgttaaattg
gtttaaatgtataatttcatagcaatgaaatctgtttgaaaacgaggaca
acatacaataaatttatgcatctcgagaagagtgtattgtgCGCAAAAGT
GCGCATAAAATATCATCAATGGGAAAATTCCATCCAATGTTAAATAAACT
TACACATATATAATAGAGATTTGGAAAAGGCAGATAGATTTTGAAGCATG
TCCGCAATTATTCTATGATTAATTTATGTAGATATAAGTATCCAAAGATA
AtgtaatgatattaatgcaaattaaAACTACTTTACCCGGGGCCTGTCGT
GTCATGGGTTTGCTACGTAACAAATTCTTTTGACGAAAACACACATCATC
TCAAActcgacccttagtgggactgaaattataTATTGTGAATCTTACGA
TCCTtaagtaaaagtaagtaagtttgcgaccgcagtcgagggcgacccga
aggctcccttttcctatagctgtctaccccacccgaaggtaggggagggc
accactcctttccctggatttctccacttacccttgatccgtctcttagt
tgctgagcatcaagcagagaggcatcaagtaccattttggagcccccccc
ccagcggatgGCGTGATAGAGGGTTTTTTTTTNGCTGTCTACcccacccg
aaggtaggggagggcaccactcctttccctggatttctccacttaccctt
gatccgtctcttagttgctgagcatcaagcagagaggcatcaagtaccat
tttggagcccccccccagcggatgGCGTGAtagagggtttttcgtggcgt
gatggcgtgaaattttgagaaaaacggagtgaaaatgaagtgccggcgtg
atcgtaaaatcgagttttttaggcgtgatggcgtgaaatttgcagttcag
cgtgaaaattatatttattacgtgaatcgtaattctatgtccattttagc
caatttagagggtttaaatttcaaaattttcttggtcggccccaactatg
gaggggcctcctatagatctcattttaaaacataaaagaaacggttcaaa
cagttttattcatctgccatttatccttgtaactttCAATTGTCTTTAGC
AGTCGCTatctagtcttcaaaataaagtggaatgctatgagagggtcgat
gattgaaaatttctcccgtcggcgcaaaccatggttgcgcNN Run BLAST on NCBI protein sequence of TCONS_00007359-protein >TCONS_00007359-protein ID=TCONS_00007359-protein|Name=TCONS_00007359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MSSEASSSTSQTTQRGPLKPITHELAFLETFFYSIAQFQFDRAHEFADKE
RGTPDPSKQLWNGLLNSLITFANAEKSYFAMAFIEKRIFNRTLKPVYTQL
STDLFTLIDAANEVHDSEALALELCKQMKRFTQARLEMIDFYEYFMKCKW
SHVRNTKEIITTIQKINTMFTKDFHHPVLDPVKTGFNFETEILNTLLQAE
LKLCEWEFLESLLTLRECQSKLHAWRLLSPSNSVKEQLLASFTYKSFFMR
GAKKQIDTPALYQWLQLFHLHMLSKFSFYFYSTLLHGQAASPDLKGSLTK
NSIDYVAKITTFQRKTDAHSISLVLDTTTKEKVYKGHGYFMDNTLVNAPT
GINSYPSIVNIPPENVPATAHWPNIIIMLTDRTNDLNATDKIGYLHDTRL
ESTYFLIKVDVRMYLVLIFKMKKKERDSYIQNFLLEMRANLGHDKLFQML
KPNQSKLFNYQKN Run BLAST on NCBI transcript from alignment at sc0000075:712726..716617 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007359 ID=TCONS_00007359|Name=TCONS_00007359|organism=Clytia hemisphaerica|type=transcript|length=3892bp|location=Sequence derived from alignment at sc0000075:712726..716617 (Clytia hemisphaerica)
NNgcgcaaccatggtttgcgccgacgggagaaattttcaatcatcgaccc
tctcatagcattccactttattttgaagactagatAGCGACTGCTAAAGA
CAATTGaaagttacaaggataaatggcagatgaataaaactgtttgaacc
gtttcttttatgttttaaaatgagatctataggaggcccctccatagttg
gggccgaccaagaaaattttgaaatttaaaccctctaaattggctaaaat
ggacatagaattacgattcacgtaataaatataattttcacgctgaactg
caaatttcacgccatcacgcctaaaaaactcgattttacgatcacgccgg
cacttcattttcactccgtttttctcaaaatttcacgccatcacgccacg
aaaaaccctctaTCACGCcatccgctgggggggggctccaaaatggtact
tgatgcctctctgcttgatgctcagcaactaagagacggatcaagggtaa
gtggagaaatccagggaaaggagtggtgccctcccctaccttcgggtggg
GTAGACAGCNAAAAAAAAACCCTCTATCACGCcatccgctgggggggggg
ctccaaaatggtacttgatgcctctctgcttgatgctcagcaactaagag
acggatcaagggtaagtggagaaatccagggaaaggagtggtgccctccc
ctaccttcgggtggggtagacagctataggaaaagggagccttcgggtcg
ccctcgactgcggtcgcaaacttacttacttttacttaAGGATCGTAAGA
TTCACAATAtataatttcagtcccactaagggtcgagTTTGAGATGATGT
GTGTTTTCGTCAAAAGAATTTGTTACGTAGCAAACCCATGACACGACAGG
CCCCGGGTAAAGTAGTTttaatttgcattaatatcattacaTTATCTTTG
GATACTTATATCTACATAAATTAATCATAGAATAATTGCGGACATGCTTC
AAAATCTATCTGCCTTTTCCAAATCTCTATTATATATGTGTAAGTTTATT
TAACATTGGATGGAATTTTCCCATTGATGATATTTTATGCGCACTTTTGC
Gcacaatacactcttctcgagatgcataaatttattgtatgttgtcctcg
ttttcaaacagatttcattgctatgaaattatacatttaaaccaatttaa
caaattttttttatttggctTCACGGCACTTTAGAATTGGCTGGAATGTT
AATTTTCGTTGAGAAAATTTAataattagtatatgtaatcacatgataac
gagtgcaattttcgaattgtacgagttattatgtgattacgagctaatcg
cacaatggctttcactactttttctcagttaggaaagtaaattacagaaa
ttacactgagagttttatactTTTCTCTTCTCTTTGTGTCTtacttttat
tgttgtttattgattttctttctcacaaaataaattttgaatgtaattaa
aacgttcgatgcaaaaaaaatgtaagaaaaaacattaaaatcaattttgt
aaacattggcgccgcattggagagtgtgattaacgattaatNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtgatta
acgattaattgctctctaaaggatgcaattaacgattaattgctctcttt
gagggcgtgccaaataagaaaaaataacccatcgtgcgattaaagCCAAA
AACGTAATGCCAAGCTATAACTCTTTTAATTcggaattttgaaatgaatt
atTGTAAATAGTCACACATCATGtatactttgcaaaaagttaattcattt
tgtaaaaagaCCGTTGAAACTAATCTTTATTCCCGCTATCATGAGTTTAT
ATATAgcaaagtagatgcttatattaaaaataatcttaaaatttcgatcC
GCAACTAATAACTAGTTGACTTGTAGTCTTCACAAAGTTTTACAGCTTGT
CTAAAAAGCCTTCTCTCACACGGaggtaaaatattaaaaataaaaattta
gaatatAAAATGAATGTCTTGACCAGATGGGGGGGGGGGANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGGGGGGGGGGTACTTTGGCAAAAAGGGGTACGGagatgtgc
cgctggtcagggtaacTTTTTCACCTCCACAAGTTCTACATAGGGTCGTA
AAAACATaagaatagaaaaatcagtcccgcgtagggtacctttttgaggg
aatttgaatttagaaaaaaagtgggagattttaaggaaattttggaatca
ctttttttctcaaatttggcaaaattttcaaagtcattTTTGGCAAGGGT
AATCCACCCCACCCTCGAGGCTTCgagaatgtgaattaactgaatttACG
AAAATAATCTCAATTCTTTTGATAATTAAAGAGTTTAGATTGATTTGGTT
TTAACATTTGGAACAATTTATCGTGTCCCAGATTGGCTCTCATTTCTAAC
AAGAAGTTTTGTATGTAACTGTCACGTTCCttctttttcatcttaaaaat
gAGCACCAAATACATTCGAACATCAACTTTGATCAAGAAGTATGTACTCT
CCAACCTTGTGTCATGTAAATAACCAATCTTATCAGTAGCATTCAAATCA
TTTGTTCGATCAGTCAACATGATGATGATATTGGGCCAGTGAGCAGTTGC
TGGCACATTCTCAGGTGGAATATTGACAATACTTGGATATGAGTTGATTC
CAGTGGGTGCATTAACCAGTGTGTTATCCATGAAATATCCGTGTCCCTTA
TACACTTTCTCCTTGGTGGTGGTATCAAGGACAAGAGAAATACTATGAGC
ATCTGTTTTACGTTGAAATGTGGTAATCTTGGCAACGTAATCGATACTGT
TCTTGGTTAAGGAACCTTTCAGATCCGGCGAAGCAGCTTGACCATGAAGA
AGTGTGGAATAGAAATAAAAACTGAATTTGGATAACATGTGAAGATGAAA
GAGTTGCAACCATTGGTATAACGCTGGTGTATCGATCTGTTTCTTGGCAC
CTCTCATGAAGAAAGATTTATAGGTAAAGGAAGCCAACAATTGCTCTTTC
ACTGAATTGGATGGGGACAGCAATCTCCATGCATGAAGCTTTGATTGACA
CTCTCGTAAAGTAAGCAGTGATTCTAAAAACTCCCATTCACAAAGTTTGA
GTTCTGCTTGCAATAACGTGTTCAGAATCTCGGTTTCAAAGTTGAATCCC
GTTTTAACAGGATCCAATACAGGATGGTGGAAATCTTTGGTGAACATTGT
GTTAATCTTCTGAATGGTGGTAATGATTTCCTTCGTGTTTCGCACGTGGC
TCCACTTACACTTCATAAAGTATTCGTAAAAATCAATCATCTCTAGCCTG
GCCTGTGTGAACCGTTTCATTTGTTTACATAGCTCTAAGGCTAGTGCCTC
GCTATCATGAACTTCATTCGCAGCATCGATCAATGTGAAGAGGTCTGTGG
AGAGCTGAGTATAAACAGGTTTCAAAGTACGGTTAAAGATTCGTTTCTCA
ATAAAAGCCATCGCAAAATAACTTTTCTCGGCATTGGCGAAAGTTATAAG
CGAGTTGAGTAAGCCGTTCCATAACTGTTTCGAAGGGTCCGGAGTGCCAC
GTTCTTTATCGGCAAACTCGTGAGCACGATCGAATTGAAATTGTGCAATC
GAATAAAAAAAGGTTTCTAAGAAAGCCAATTCGTGCGTGATGGGTTTCAG
TGGACCACGTTGTGTTGTCTGACTTGTTGAGCTACTCGCTTCTGATGACA
tagtttatttttattcttttttctttatgctgaaaaatatat Coding sequence (CDS) from alignment at sc0000075:712726..716617 >TCONS_00007359 ID=TCONS_00007359|Name=TCONS_00007359|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000075:712726..716617 (Clytia hemisphaerica)
TCAATTCTTTTGATAATTAAAGAGTTTAGATTGATTTGGTTTTAACATTT
GGAACAATTTATCGTGTCCCAGATTGGCTCTCATTTCTAACAAGAAGTTT
TGTATGTAACTGTCACGTTCCttctttttcatcttaaaaatgAGCACCAA
ATACATTCGAACATCAACTTTGATCAAGAAGTATGTACTCTCCAACCTTG
TGTCATGTAAATAACCAATCTTATCAGTAGCATTCAAATCATTTGTTCGA
TCAGTCAACATGATGATGATATTGGGCCAGTGAGCAGTTGCTGGCACATT
CTCAGGTGGAATATTGACAATACTTGGATATGAGTTGATTCCAGTGGGTG
CATTAACCAGTGTGTTATCCATGAAATATCCGTGTCCCTTATACACTTTC
TCCTTGGTGGTGGTATCAAGGACAAGAGAAATACTATGAGCATCTGTTTT
ACGTTGAAATGTGGTAATCTTGGCAACGTAATCGATACTGTTCTTGGTTA
AGGAACCTTTCAGATCCGGCGAAGCAGCTTGACCATGAAGAAGTGTGGAA
TAGAAATAAAAACTGAATTTGGATAACATGTGAAGATGAAAGAGTTGCAA
CCATTGGTATAACGCTGGTGTATCGATCTGTTTCTTGGCACCTCTCATGA
AGAAAGATTTATAGGTAAAGGAAGCCAACAATTGCTCTTTCACTGAATTG
GATGGGGACAGCAATCTCCATGCATGAAGCTTTGATTGACACTCTCGTAA
AGTAAGCAGTGATTCTAAAAACTCCCATTCACAAAGTTTGAGTTCTGCTT
GCAATAACGTGTTCAGAATCTCGGTTTCAAAGTTGAATCCCGTTTTAACA
GGATCCAATACAGGATGGTGGAAATCTTTGGTGAACATTGTGTTAATCTT
CTGAATGGTGGTAATGATTTCCTTCGTGTTTCGCACGTGGCTCCACTTAC
ACTTCATAAAGTATTCGTAAAAATCAATCATCTCTAGCCTGGCCTGTGTG
AACCGTTTCATTTGTTTACATAGCTCTAAGGCTAGTGCCTCGCTATCATG
AACTTCATTCGCAGCATCGATCAATGTGAAGAGGTCTGTGGAGAGCTGAG
TATAAACAGGTTTCAAAGTACGGTTAAAGATTCGTTTCTCAATAAAAGCC
ATCGCAAAATAACTTTTCTCGGCATTGGCGAAAGTTATAAGCGAGTTGAG
TAAGCCGTTCCATAACTGTTTCGAAGGGTCCGGAGTGCCACGTTCTTTAT
CGGCAAACTCGTGAGCACGATCGAATTGAAATTGTGCAATCGAATAAAAA
AAGGTTTCTAAGAAAGCCAATTCGTGCGTGATGGGTTTCAGTGGACCACG
TTGTGTTGTCTGACTTGTTGAGCTACTCGCTTCTGATGACAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007359-exon-sc0000075-1491911889:712726..716617 | TCONS_00007359-exon-sc0000075-1491911889:712726..716617 | Clytia hemisphaerica | exon |
| TCONS_00007359-exon-sc0000075-1510915933:712726..716617 | TCONS_00007359-exon-sc0000075-1510915933:712726..716617 | Clytia hemisphaerica | exon |
| TCONS_00007359-exon-sc0000075-1575043694:712726..716617 | TCONS_00007359-exon-sc0000075-1575043694:712726..716617 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:712726..716617 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018544 | DUF2003 |
Blast
BLAST of TCONS_00007359 vs. Swiss-Prot (Human)
Match: CL066 (KICSTOR complex protein C12orf66 OS=Homo sapiens GN=C12orf66 PE=1 SV=4) HSP 1 Score: 254.988 bits (650), Expect = 6.658e-74 Identity = 148/446 (33.18%), Postives = 248/446 (55.61%), Query Frame = 3
Query: 99 PITHELAFLETFFYSIAQFQFDRAHEFADKERGTPDPSKQLWNGLLNSLITFANAEKSYFAMAFIEKRI-----FNR--TLKPVYTQLSTDLFTLIDAANEVHDS----EALALELCKQMKRFTQARLEMIDFYEYFMKCKWSHVRNTKEIITTIQKINTMFTKDFHHPVLDPVKTGFNFETEILNTLLQAELKLCEWEFLESLLTLRECQSKLHAW-RLLSPSNSVKEQLLASFTYKSFFMRGAKKQIDTPALYQWLQLFHLHMLSKFSFYFYSTLLHGQAASPDLKGSLTKNSIDYVAKITTFQRKTDAHSISLVLDTTTKEKVYKGHGYFMDNTLVNAPTGINSYPSIVNIPPENVPATAHWPNIIIMLTDRTNDLNATDKIGYLHDTRLESTYFLIKVDVRMYLVLIFKMKKKERDSYIQNFLLEMRANLGHDKLFQMLKPN 1400
P+ E A LETFF + F +D+A + +KER + W LL +L A AEK Y ++ ++ +++ F+R +++ +YT L +L ++ + + E L L +Q+ F QAR+EM DFYE N +E++ + I ++ FHHP+L P+++ F E ++L LL+A+ ++ EW+FL SL+ L +KL W ++ K+ L F ++K + P L+ WL +L+KFSFYF+ L AS ++K K + D+ KI++F RK DA ++SL+ D E ++GHGY ++ AP G++ YP++V++P + HWPN+I+++TDRT+DLN+ +K+ + +D +++STYFL + + +V+IF+ KK ERDS+ +FL E+ L + K+F LKP
Sbjct: 10 PVPVEQAVLETFFSHLGIFSYDKAKDNVEKEREANKSAGGSWLSLLAALAHLAAAEKVYHSLTYLGQKLGGQSFFSRKDSIRTIYTSLHNELKKVVTGRGALGGTAPHVEELLSHLSEQLCFFVQARMEMADFYEKMYTLSTQKFINAEELVGLLDAIMKKYSSRFHHPILSPLESSFQLEVDVLCHLLKAQAQVSEWKFLPSLVNLHSAHTKLQTWGQIFEKQRETKKHL---------FGGQSQKAVQPPHLFLWLMKLKNMLLAKFSFYFHEALSRQTTAS-EMKTLTAKANPDFFGKISSFIRKYDAANVSLIFDNRGSES-FQGHGYHHPHSYREAPKGVDQYPAVVSLPSDR--PVMHWPNVIMIMTDRTSDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVIIFESKKSERDSHFISFLNEVSLALKNPKVFASLKPG 442
The following BLAST results are available for this feature:
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