TCONS_00007345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007345
Unique NameTCONS_00007345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007345 ID=TCONS_00007345|Name=TCONS_00007345|organism=Clytia hemisphaerica|type=transcript|length=477bp
CTTGCCCTGACAGTAGAGATAATTGTTTGAACATGTGACTAGTCTAGACT
TGGTTTGAGCCCACTTTTTAGGTGCGCCCATTGAAGCATGGTGCCCCCAA
AGAgttaggtccccttgagaaattgctttgggttaggtacccccattcag
ccgataatttttttaaatcgacactttttctttttttgtataCCAGAATA
TTGTAATCAGTTATGAGTGTGAGTGttaattggttaaaaagagcCAAAAC
CACAACTAGCTACCATGTTTGCTTACTCTTATCCTGAGGTTTTAGCTTCT
CTATGCTAGCAGGAGAAGTGCACTCGCATgagaaaagctttgtttttatg
ctataaagatggcggctataaataaaaacaagctcacatttgaaaaatat
agcaaaagatgaCGTGATgggaaagaaaagaaacaagaGAATCGGAtggg
gggctgaaaccatgcTAGATCTCTACT
Run BLAST on NCBI

transcript from alignment at sc0000075:307737..308213

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007345 ID=TCONS_00007345|Name=TCONS_00007345|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0000075:307737..308213 (Clytia hemisphaerica)
AGTAGAGATCTAgcatggtttcagccccccaTCCGATTCtcttgtttctt
ttctttcccATCACGtcatcttttgctatatttttcaaatgtgagcttgt
ttttatttatagccgccatctttatagcataaaaacaaagcttttctcAT
GCGAGTGCACTTCTCCTGCTAGCATAGAGAAGCTAAAACCTCAGGATAAG
AGTAAGCAAACATGGTAGCTAGTTGTGGTTTTGgctctttttaaccaatt
aaCACTCACACTCATAACTGATTACAATATTCTGGtatacaaaaaaagaa
aaagtgtcgatttaaaaaaattatcggctgaatgggggtacctaacccaa
agcaatttctcaaggggacctaacTCTTTGGGGGCACCATGCTTCAATGG
GCGCACCTAAAAAGTGGGCTCAAACCAAGTCTAGACTAGTCACATGTTCA
AACAATTATCTCTACTGTCAGGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004124XLOC_004124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007345-exon-sc0000075-1491911889:307737..308213TCONS_00007345-exon-sc0000075-1491911889:307737..308213Clytia hemisphaericaexon
TCONS_00007345-exon-sc0000075-1510915933:307737..308213TCONS_00007345-exon-sc0000075-1510915933:307737..308213Clytia hemisphaericaexon
TCONS_00007345-exon-sc0000075-1575043694:307737..308213TCONS_00007345-exon-sc0000075-1575043694:307737..308213Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:307737..308213 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.661898	0.395648	1.55004	0.744894	1.42817	0.1431	0.170195	0	1.02399	0	0.938828	1.60238	0.448331	0.731456	1.50339	0.573628	1.98754	0.616354	0.703612	1.91433	1.95415	1.8729	0.455352	0.551974	0	1.39533	0.907594	0.774887	1.46931	0.302392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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