TCONS_00007339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007339
Unique NameTCONS_00007339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007339 ID=TCONS_00007339|Name=TCONS_00007339|organism=Clytia hemisphaerica|type=transcript|length=707bp
AATCATTGATGGTGCTCTGAGAGCACAATGCATGGGTCTGGTATGGAAAC
TAAAAATCCATGACATGATAAACGCCACAGATGGGTTTCTTTCTTGCAAA
GAAATATGTCAACAAATCAAGTCAACAAGTCATGATATTATTCCAGATCA
TTTGCAACGGGTAATGCGGTATCTGTCCAACTTCGatgtttttgaagaga
aatacAATGATGAGGGTGAGATTGTGTTCAAAAGCACTGAAGTATCCAGA
CAGTTACCACTACCGTTGGCATTCATTCATTCAACACTTGCGCCGCATTT
AATAGACTTCCTACAAGGAACACCAAGCGAAGATAATAGCCTTCTTCAGC
AAGTCACTGGATCAGATTTTTGGCAACTCGTGGATAACAATGAAGAATTT
GGAGGTTACTTTTGGAACTACATGAAGACGACCAATGAAGAACTCCTCCC
AGACATACCAAAGGTGACCGAAGCCATAACGAGAGAAGGTAAACAGAATG
CTACTATAGTTGATGTAGGCGGTGGATCTGGTCAAATGTCCAAAGCCTTC
TATGACAATCTTCCCAGCCTCAGATGCATCAATTTCGATACACCAGAAGT
GATTAAGAAACACCCTGAAATTCCCGGAGTCGAGATGGTTGGTGGTGATT
TTTTCAAAGCAGAAACGCTCCCTAAATGTGAtatcatttttacaaaatat
atcTTCC
Run BLAST on NCBI

protein sequence of TCONS_00007339-protein

>TCONS_00007339-protein ID=TCONS_00007339-protein|Name=TCONS_00007339-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
IIDGALRAQCMGLVWKLKIHDMINATDGFLSCKEICQQIKSTSHDIIPDH
LQRVMRYLSNFDVFEEKYNDEGEIVFKSTEVSRQLPLPLAFIHSTLAPHL
IDFLQGTPSEDNSLLQQVTGSDFWQLVDNNEEFGGYFWNYMKTTNEELLP
DIPKVTEAITREGKQNATIVDVGGGSGQMSKAFYDNLPSLRCINFDTPEV
IKKHPEIPGVEMVGGDFFKAETLPKCDIIFTKYIF
Run BLAST on NCBI

transcript from alignment at sc0000075:171983..172689

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007339 ID=TCONS_00007339|Name=TCONS_00007339|organism=Clytia hemisphaerica|type=transcript|length=707bp|location=Sequence derived from alignment at sc0000075:171983..172689 (Clytia hemisphaerica)
GGAAgatatattttgtaaaaatgataTCACATTTAGGGAGCGTTTCTGCT
TTGAAAAAATCACCACCAACCATCTCGACTCCGGGAATTTCAGGGTGTTT
CTTAATCACTTCTGGTGTATCGAAATTGATGCATCTGAGGCTGGGAAGAT
TGTCATAGAAGGCTTTGGACATTTGACCAGATCCACCGCCTACATCAACT
ATAGTAGCATTCTGTTTACCTTCTCTCGTTATGGCTTCGGTCACCTTTGG
TATGTCTGGGAGGAGTTCTTCATTGGTCGTCTTCATGTAGTTCCAAAAGT
AACCTCCAAATTCTTCATTGTTATCCACGAGTTGCCAAAAATCTGATCCA
GTGACTTGCTGAAGAAGGCTATTATCTTCGCTTGGTGTTCCTTGTAGGAA
GTCTATTAAATGCGGCGCAAGTGTTGAATGAATGAATGCCAACGGTAGTG
GTAACTGTCTGGATACTTCAGTGCTTTTGAACACAATCTCACCCTCATCA
TTgtatttctcttcaaaaacatCGAAGTTGGACAGATACCGCATTACCCG
TTGCAAATGATCTGGAATAATATCATGACTTGTTGACTTGATTTGTTGAC
ATATTTCTTTGCAAGAAAGAAACCCATCTGTGGCGTTTATCATGTCATGG
ATTTTTAGTTTCCATACCAGACCCATGCATTGTGCTCTCAGAGCACCATC
AATGATT

Coding sequence (CDS) from alignment at sc0000075:171983..172689

>TCONS_00007339 ID=TCONS_00007339|Name=TCONS_00007339|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0000075:171983..172689 (Clytia hemisphaerica)
GAAgatatattttgtaaaaatgataTCACATTTAGGGAGCGTTTCTGCTT
TGAAAAAATCACCACCAACCATCTCGACTCCGGGAATTTCAGGGTGTTTC
TTAATCACTTCTGGTGTATCGAAATTGATGCATCTGAGGCTGGGAAGATT
GTCATAGAAGGCTTTGGACATTTGACCAGATCCACCGCCTACATCAACTA
TAGTAGCATTCTGTTTACCTTCTCTCGTTATGGCTTCGGTCACCTTTGGT
ATGTCTGGGAGGAGTTCTTCATTGGTCGTCTTCATGTAGTTCCAAAAGTA
ACCTCCAAATTCTTCATTGTTATCCACGAGTTGCCAAAAATCTGATCCAG
TGACTTGCTGAAGAAGGCTATTATCTTCGCTTGGTGTTCCTTGTAGGAAG
TCTATTAAATGCGGCGCAAGTGTTGAATGAATGAATGCCAACGGTAGTGG
TAACTGTCTGGATACTTCAGTGCTTTTGAACACAATCTCACCCTCATCAT
TgtatttctcttcaaaaacatCGAAGTTGGACAGATACCGCATTACCCGT
TGCAAATGATCTGGAATAATATCATGACTTGTTGACTTGATTTGTTGACA
TATTTCTTTGCAAGAAAGAAACCCATCTGTGGCGTTTATCATGTCATGGA
TTTTTAGTTTCCATACCAGACCCATGCATTGTGCTCTCAGAGCACCATCA
ATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004118XLOC_004118Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007339-proteinTCONS_00007339-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007339-exon-sc0000075-1491911889:171983..172689TCONS_00007339-exon-sc0000075-1491911889:171983..172689Clytia hemisphaericaexon
TCONS_00007339-exon-sc0000075-1510915933:171983..172689TCONS_00007339-exon-sc0000075-1510915933:171983..172689Clytia hemisphaericaexon
TCONS_00007339-exon-sc0000075-1575043694:171983..172689TCONS_00007339-exon-sc0000075-1575043694:171983..172689Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:171983..172689 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13985	1.38941	0.806621	1.10481	18.3497	11.3117	4.12159	5.05903	1.38076	3.5693	0.505233	0.379566	3.26921	3.24749	2.26535	2.86519	3.2088	4.60448	0	0.633969	0.0688793	0	0.163366	0	0.152975	0	0	0	0	0.563928
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR001077O_MeTrfase_2
IPR016461O-MeTrfase_COMT
IPR029063SAM-dependent_MTases
Vocabulary: Molecular Function
TermDefinition
GO:0008171O-methyltransferase activity
GO:0008168methyltransferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0008171 O-methyltransferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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