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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007337 ID=TCONS_00007337|Name=TCONS_00007337|organism=Clytia hemisphaerica|type=transcript|length=1752bp
gttttctttagaaaaacaaaagaaatttctcAAACAGACCACCCCCATGT
TTTATAAAACAAATAGAGAAATGAGGTGTGAAAAGTTTGCTCGTTCATCT
TCTGGAAAAGCCAGTATTAGTTAAATTGCCAAAtttcttcttgaaattta
aaaatagaaaaaaacgaaaataagATTATCTTGATATCAAAACCAATGTC
TCGCgtcttttttgctatttttacaCGTCTCGTCTACAGATAATGGTACC
AGGTCTCAAATTTCCATGCCATACACCGTTCGAGCCAAGATTGATTTTAA
CTTCCCTTCAAcgaaagtacacgttttttataagaaaaactatataagaa
cataaagcttcgaggcccaaaaatttaagaacattctaagaacattctaa
ggctttggagacttaaaaaaattgcattttcttaagaaattacatcaaaa
tgctcaaaaaatgctgaaaataagaacattttaagaacatttttaggctt
caaatccaaaaaactaagaacatcctaAGGCTTCGAAAATatttgacgtt
cttataaaaaaaaaacgtgtagttctTCTAGTTAAGAGCTATCGTCCGAA
GCATTTATTAACGCCTTCTTGAAGTTCCACTGATATCTTGTTAGGACCTT
GCTCTTTTGTATTTGTTAtatataaaatctgaaaatctctCTCGTAGAAG
TCTCAAATTTCCGGCTTCAAATTAAGAAGCTTTACTCCTTCATCCTCGCT
GTCTCAACCACTAATATCTGAAATCATTCAGTATTTCTTGAACAAAGAGG
ACAACGAAAGCCGACGTCCTTTAATCTTCTGGAACTCGTGTATAGTTTCC
AGATCAGATGCCCAGGAGAtgcttttcttcttttgtgGAGGTTTTGGTTC
ATCTTTAACAACTCCAGAGTCATCAGAAATGTTCCCATCGTCCTCTTCGT
TCAGATACCCCAACGATGGATGGTAATTCGGTAAAAGTTCTAATTGTGAA
TCTAAAGAATGCCGTTGTCTGTGAAGGTTCCTTCGATAAGACGCTGTTGT
TATTTTATTCATATTTTCGTCTGAGTAATAATCTCTCAGTTCTGCTCTtt
cttcatcattttcactttcgttttcgataGTAGAACAACAAATATCACTT
TCACTGTCTAGTGTAAcgccactttcgttttcgggtTCACTTTCAACACA
TCTGTGGTCTTGTGTATTTTCCTCACTAGAAATCTCTTGATTTTCAGATC
CTTCTGACTGTTCTCCGAGACTATCATTTTTATCTACATTATTCACCACT
CTCTTTTCTTCATTATCAACGAAATCTTGATCGTCCAAAGAAGGATTCAC
AACTTGAGTTTCATCAGTAATTTTCAAATcggaaagtttttcaaaatcgt
gGTCCATCTCTGATGATAAAACACCATTCatgtatttttcttcttcattt
gttGAGTTAGAGGAGGTTGTTTCTTTGTATTGATATCTACCAACTTGATT
CCCTGGTGAAAGATCCGTCCCGTTAGATAGTTGTTTCTTACTAATATCAA
CGGATCTTCTCCTCGTCTTTAACCAAGACATCGCGTTTCCTATGCTCTTT
TTCTCGCAGTCTGATgttataaatttttatatatattttctttgagaaaa
agaaagatgaaaaaaaagaatagtGAAGAATAAAGAGATGGAATTACATA
TAAAAAACATTGTTGGAAAGTGAAGAACCCAGAAATATTAAAAAAGGAGg
ac Run BLAST on NCBI protein sequence of TCONS_00007337-protein >TCONS_00007337-protein ID=TCONS_00007337-protein|Name=TCONS_00007337-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MSWLKTRRRSVDISKKQLSNGTDLSPGNQVGRYQYKETTSSNSTNEEEKY
MNGVLSSEMDHDFEKLSDLKITDETQVVNPSLDDQDFVDNEEKRVVNNVD
KNDSLGEQSEGSENQEISSEENTQDHRCVESEPENESGVTLDSESDICCS
TIENESENDEERAELRDYYSDENMNKITTASYRRNLHRQRHSLDSQLELL
PNYHPSLGYLNEEDDGNISDDSGVVKDEPKPPQKKKSISWASDLETIHEF
QKIKGRRLSLSSLFKKY Run BLAST on NCBI transcript from alignment at sc0000075:90938..92689 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007337 ID=TCONS_00007337|Name=TCONS_00007337|organism=Clytia hemisphaerica|type=transcript|length=1752bp|location=Sequence derived from alignment at sc0000075:90938..92689 (Clytia hemisphaerica)
gtcCTCCTTTTTTAATATTTCTGGGTTCTTCACTTTCCAACAATGTTTTT
TATATGTAATTCCATCTCTTTATTCTTCactattcttttttttcatcttt
ctttttctcaaagaaaatatatataaaaatttataacATCAGACTGCGAG
AAAAAGAGCATAGGAAACGCGATGTCTTGGTTAAAGACGAGGAGAAGATC
CGTTGATATTAGTAAGAAACAACTATCTAACGGGACGGATCTTTCACCAG
GGAATCAAGTTGGTAGATATCAATACAAAGAAACAACCTCCTCTAACTCa
acaaatgaagaagaaaaatacatGAATGGTGTTTTATCATCAGAGATGGA
CcacgattttgaaaaactttccgATTTGAAAATTACTGATGAAACTCAAG
TTGTGAATCCTTCTTTGGACGATCAAGATTTCGTTGATAATGAAGAAAAG
AGAGTGGTGAATAATGTAGATAAAAATGATAGTCTCGGAGAACAGTCAGA
AGGATCTGAAAATCAAGAGATTTCTAGTGAGGAAAATACACAAGACCACA
GATGTGTTGAAAGTGAacccgaaaacgaaagtggcgTTACACTAGACAGT
GAAAGTGATATTTGTTGTTCTACtatcgaaaacgaaagtgaaaatgatga
agaaAGAGCAGAACTGAGAGATTATTACTCAGACGAAAATATGAATAAAA
TAACAACAGCGTCTTATCGAAGGAACCTTCACAGACAACGGCATTCTTTA
GATTCACAATTAGAACTTTTACCGAATTACCATCCATCGTTGGGGTATCT
GAACGAAGAGGACGATGGGAACATTTCTGATGACTCTGGAGTTGTTAAAG
ATGAACCAAAACCTCcacaaaagaagaaaagcaTCTCCTGGGCATCTGAT
CTGGAAACTATACACGAGTTCCAGAAGATTAAAGGACGTCGGCTTTCGTT
GTCCTCTTTGTTCAAGAAATACTGAATGATTTCAGATATTAGTGGTTGAG
ACAGCGAGGATGAAGGAGTAAAGCTTCTTAATTTGAAGCCGGAAATTTGA
GACTTCTACGAGagagattttcagattttatataTAACAAATACAAAAGA
GCAAGGTCCTAACAAGATATCAGTGGAACTTCAAGAAGGCGTTAATAAAT
GCTTCGGACGATAGCTCTTAACTAGAagaactacacgttttttttttata
agaacgtcaaatATTTTCGAAGCCTtaggatgttcttagttttttggatt
tgaagcctaaaaatgttcttaaaatgttcttattttcagcattttttgag
cattttgatgtaatttcttaagaaaatgcaatttttttaagtctccaaag
ccttagaatgttcttagaatgttcttaaatttttgggcctcgaagcttta
tgttcttatatagtttttcttataaaaaacgtgtactttcgTTGAAGGGA
AGTTAAAATCAATCTTGGCTCGAACGGTGTATGGCATGGAAATTTGAGAC
CTGGTACCATTATCTGTAGACGAGACGtgtaaaaatagcaaaaaagacGC
GAGACATTGGTTTTGATATCAAGATAATcttattttcgtttttttctatt
tttaaatttcaagaagaaaTTTGGCAATTTAACTAATACTGGCTTTTCCA
GAAGATGAACGAGCAAACTTTTCACACCTCATTTCTCTATTTGTTTTATA
AAACATGGGGGTGGTCTGTTTgagaaatttcttttgtttttctaaagaaa
ac Coding sequence (CDS) from alignment at sc0000075:90938..92689 >TCONS_00007337 ID=TCONS_00007337|Name=TCONS_00007337|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0000075:90938..92689 (Clytia hemisphaerica)
ATGTCTTGGTTAAAGACGAGGAGAAGATCCGTTGATATTAGTAAGAAACA
ACTATCTAACGGGACGGATCTTTCACCAGGGAATCAAGTTGGTAGATATC
AATACAAAGAAACAACCTCCTCTAACTCaacaaatgaagaagaaaaatac
atGAATGGTGTTTTATCATCAGAGATGGACcacgattttgaaaaactttc
cgATTTGAAAATTACTGATGAAACTCAAGTTGTGAATCCTTCTTTGGACG
ATCAAGATTTCGTTGATAATGAAGAAAAGAGAGTGGTGAATAATGTAGAT
AAAAATGATAGTCTCGGAGAACAGTCAGAAGGATCTGAAAATCAAGAGAT
TTCTAGTGAGGAAAATACACAAGACCACAGATGTGTTGAAAGTGAacccg
aaaacgaaagtggcgTTACACTAGACAGTGAAAGTGATATTTGTTGTTCT
ACtatcgaaaacgaaagtgaaaatgatgaagaaAGAGCAGAACTGAGAGA
TTATTACTCAGACGAAAATATGAATAAAATAACAACAGCGTCTTATCGAA
GGAACCTTCACAGACAACGGCATTCTTTAGATTCACAATTAGAACTTTTA
CCGAATTACCATCCATCGTTGGGGTATCTGAACGAAGAGGACGATGGGAA
CATTTCTGATGACTCTGGAGTTGTTAAAGATGAACCAAAACCTCcacaaa
agaagaaaagcaTCTCCTGGGCATCTGATCTGGAAACTATACACGAGTTC
CAGAAGATTAAAGGACGTCGGCTTTCGTTGTCCTCTTTGTTCAAGAAATA
CTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007337-exon-sc0000075-1491911889:90938..92689 | TCONS_00007337-exon-sc0000075-1491911889:90938..92689 | Clytia hemisphaerica | exon |
| TCONS_00007337-exon-sc0000075-1510915933:90938..92689 | TCONS_00007337-exon-sc0000075-1510915933:90938..92689 | Clytia hemisphaerica | exon |
| TCONS_00007337-exon-sc0000075-1575043694:90938..92689 | TCONS_00007337-exon-sc0000075-1575043694:90938..92689 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:90938..92689 . |
Blast
The following BLAST results are available for this feature:
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