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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007324 ID=TCONS_00007324|Name=TCONS_00007324|organism=Clytia hemisphaerica|type=transcript|length=5434bpRun BLAST on NCBI transcript from alignment at sc0000075:522134..536820- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007324 ID=TCONS_00007324|Name=TCONS_00007324|organism=Clytia hemisphaerica|type=transcript|length=14687bp|location=Sequence derived from alignment at sc0000075:522134..536820- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007324 vs. Swiss-Prot (Human)
Match: NOTC3 (Neurogenic locus notch homolog protein 3 OS=Homo sapiens GN=NOTCH3 PE=1 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 1.175e-36 Identity = 206/802 (25.69%), Postives = 324/802 (40.40%), Query Frame = 2
Query: 329 NNGTCSQAQSNFTCICHDGWEGRLCE--IPKC-TLKCNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPG-----SYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDN--------CAAANC-GNGQC----INKFNDYTCTCHDGYTGKNCETKI------KNESCPYDDCDRTQ----CDKRCNIPKCNYDAYLCTFNL-DPFKQCDIQECKNAINGT-CRSDCDNMNCLYDSGNC---IKPKKCS--LEEQCKKAYGDGVCHPLCNTVDCGFD-IDCISE-PNLIP-GSLVLEIDSTEGEFKAKKSQFEFELSRQLNSLVTVK-SVRTLNAGFKRKRRSISNNTSPRLE---------VTMKMDNSKCVS-----QCFSTEQ-AARFLALKSANDDXXXXXXXXXXXXXXSGEP--PITPSISPLWXXXXXXXXXXXXXXXXXXKTVKTR----FWKPEE-------TTGPGKRETPIGQEELQILDESR-DSKRQKLGFDHSEPFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTIDQQQHHDNPLHYAAHHGIIHILRTQ-------------MDYVDVNKRDNTGRTALHVATSTGNDDIFAHLIRNRSINPDIQDDEGETPLMVAVRMAGIEYVRQLVNLGSRTGLANKSGKTALHIAAMVDNYAAANILLAHSAKVDAQDNQMRTPLYLACTEDAYRTAALLVRH-CANKSAADVDDITPLMVAQRKANHDIIRLFEAN 2479
+NGTC F C C G+ G CE I +C + C+ + + + PG C C AG +G C++ ++ C ++ H G+C +PG ++ CHC + GP C +C + +C C +P G +C C G +G C + + CAAA C G C + F + C C G+TG CE + CP C + CD+ CN P C +D C+ ++ DP++QC+ +C N + C C + CLYD+ +C + + C+ E+ C + DG C CNT +CG+D +DC SE P L+ G LVL + E + F LS L + + + F R S + R E V +++DN C+ CF Q AA +L SA + + GEP P PS+ L + + + I V+ + R W PE +G R P+GQ+ L + + ++ +S ++ D + + GM + +D +Q + HH + +R D +DVN R G T L +A+ G + D DD + + + + Q LG+RT +++G+TALH+AA AA LL A +AQD+ RTPL+ A T DA +L+R+ + A D T L++A R A ++ A+
Sbjct: 1178 HNGTCVDLVGGFRCTCPPGYTGLRCEADINECRSGACHAAHTRDCLQDPGGGFRCLCH-AGFSGPRCQTVLSPCE-SQPCQHGGQCRPSPGPGGGLTFTCHCAQPFWGPRCERVARSC--RELQCPVGVPCQQ---TPRGPRCACPPGLSGPSCRSFPGSPPGASNASCAAAPCLHGGSCRPAPLAPF--FRCACAQGWTGPRCEAPAAAPEVSEEPRCPRAACQAKRGDQRCDRECNSPGCGWDGGDCSLSVGDPWRQCEALQCWRLFNNSRCDPACSSPACLYDNFDCHAGGRERTCNPVYEKYCADHFADGRCDQGCNTEECGWDGLDCASEVPALLARGVLVLTVLLPPEELLRSSADFLQRLSAILRTSLRFRLDAHGQAMVFPYHRPSPGSEPRARRELAPEVIGSVVMLEIDNRLCLQSPENDHCFPDAQSAADYLGALSAVE----RLDFPYPLRDVRGEPLEPPEPSVPLLPLLVAGAVLLLVILVLGVMVARRKREHSTLWFPEGFSLHKDVASGHKGRREPVGQDALGMKNMAKGESLMGEVATDWMD--------------TECPEAKRLKVEEPGMGAEEAVDCRQ-------WTQHHLVAADIRVAPAMALTPPQGDADADGMDVNVRGPDGFTPLMLASFCGG------ALEPMPTEEDEADDTSASIIS--------DLICQGAQLGART---DRTGETALHLAARYARADAAKRLLDAGADTNAQDHSGRTPLHTAVTADAQGVFQILIRNRSTDLDARMADGSTALILAARLAVEGMVEELIAS 1928 HSP 2 Score: 119.013 bits (297), Expect = 1.772e-26 Identity = 64/163 (39.26%), Postives = 93/163 (57.06%), Query Frame = 2
Query: 1985 VDVNKRDNTGRTALHVATSTGNDDIFAHLIRNRSINPDIQDDEGETPLMVAVRMAGIEYVRQLVNLGSRTGLANKSGKTALHIAAMVDNYAAANILLAHSAKVDAQDNQMRTPLYLACTEDAYRTAALLVRHCANKSAADVDDITPLMVAQRKANHDIIRLFE 2473
D N +D++GRT LH A + +F LIRNRS + D + +G T L++A R+A V +L+ + ++ GK+ALH AA V+N A LL + A D QD++ TPL+LA E +Y A LL+ H AN+ D D P VAQ + + DI+RL +
Sbjct: 1863 ADTNAQDHSGRTPLHTAVTADAQGVFQILIRNRSTDLDARMADGSTALILAARLAVEGMVEELIASHADVNAVDELGKSALHWAAAVNNVEATLALLKNGANKDMQDSKEETPLFLAAREGSYEAAKLLLDHFANREITDHLDRLPRDVAQERLHQDIVRLLD 2025 HSP 3 Score: 113.62 bits (283), Expect = 9.122e-25 Identity = 78/240 (32.50%), Postives = 113/240 (47.08%), Query Frame = 2
Query: 227 CLNVMDAILCFLLIFFVGLNSTNASSDACHPHPCNNG-TCSQAQSNFTCICHDGWEGRLCEI-PKCTLKCNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHH-GECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAANCGNGQ-CINKFNDYTCTCHDGYTGKNCETKIKNESCPYDDCDRTQC 934
C N + C + + G S + + D C C +G TC ++F C C G G LC + C H A C+ C C G TG +C+ D++EC+I C H G C NT GS+ C C YTGP C + C S C ATC++ I + C+C G+TG YC+ +D C ++ C NG C ++ N ++CTC G++G C+ + D+C T C
Sbjct: 291 CFNTLGGHSCVCVNGWTG-ESCSQNIDDCATAVCFHGATCHDRVASFYCACPMGKTGLLCHLDDACVSNPCHEDAICDTNPVNGRAICTCP-PGFTGGACDQDVDECSIGANPCEHLGRCVNTQGSFLCQCGRGYTGPRCETDVNEC--LSGPCRNQATCLDRIGQ---FTCICMAGFTGTYCEVDIDECQSSPCVNGGVCKDRVNGFSCTCPSGFSGSTCQLDV-------DECASTPC 516 HSP 4 Score: 110.923 bits (276), Expect = 4.874e-24 Identity = 76/232 (32.76%), Postives = 104/232 (44.83%), Query Frame = 2
Query: 212 CILEICLNVMDAILCFLLIFFVGLN-STNASSDACHPHPCN-NGTCSQAQSNFTCICHDGWEGRLCEI--PKCTLKCNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAANCGNGQCINKFNDYTCTCHDGYTGKNCETKIKN 895
C IC + C + G S + + DAC PC GTCS F C C G +GR CE+ P C H +C +PG+ C C G G C+ D++EC HG C N GS+ C C YTGP+C+ + C+ N C +C + + S + C C G+ G C VD C + CG G C + +TCTC GY G +CE + +
Sbjct: 704 CSHGICYDAPGGFRCVCEPGWSGPRCSQSLARDACESQPCRAGGTCSSDGMGFHCTCPPGVQGRQCELLSPCTPNPCEHG-GRCE-SAPGQLPVCSCP-QGWQGPRCQQDVDECAGPAPCGPHGICTNLAGSFSCTCHGGYTGPSCDQDINDCDP--NPCLNGGSCQDGVGS---FSCSCLPGFAGPRCARDVDECLSNPCGPGTCTDHVASFTCTCPPGYGGFHCEQDLPD 927 HSP 5 Score: 101.679 bits (252), Expect = 3.296e-21 Identity = 70/203 (34.48%), Postives = 94/203 (46.31%), Query Frame = 2
Query: 305 DACHPHPC-NNGTCSQA----QSNFTCICHDGWEGRLCEIPKCTLK--CNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAANCGN-GQCINKFNDYTCTCHDGYTGKNCETKI 889
D CH PC G C + + F+C C G+ G C +P L C H A+C+ P C C G G SC SD++EC + E H G C NTPGS++C C YTGP C + C + C TC + Y C C G+ G+ C+ VD+C C N G C++ N Y C C +TG+ C +
Sbjct: 80 DPCHSGPCAGRGVCQSSVVAGTARFSCRCPRGFRGPDCSLPDPCLSSPCAHG-ARCSV-GPDGRFLCSCP-PGYQGRSCRSDVDECRVGEPCRHGGTCLNTPGSFRCQCPAGYTGPLCENPAVPC--APSPCRNGGTCRQSGDL--TYDCACLPGFEGQNCEVNVDDCPGHRCLNGGTCVDGVNTYNCQCPPEWTGQFCTEDV 275 HSP 6 Score: 101.293 bits (251), Expect = 4.352e-21 Identity = 64/193 (33.16%), Postives = 99/193 (51.30%), Query Frame = 2
Query: 320 HPCNN-GTCSQAQSNFTCICHDGWEGRLCE--IPKCTLKCNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAANCGNGQCINKFNDYTCTCHDGYTGKNCETKI 889
+PC + G C Q +F C C G+ G CE + +C ++A C R QF +AG TG CE DI+EC + + + G C++ + C C ++G TC D C S C A C+++ P+GY+C C G+ G CD VD+C+ C +G+C++ ++C C GYTG CE+++
Sbjct: 400 NPCEHLGRCVNTQGSFLCQCGRGYTGPRCETDVNECLSGPCRNQATCLDR---IGQFTCICMAGFTGTYCEVDIDECQSSPCV-NGGVCKDRVNGFSCTCPSGFSGSTCQLDVDEC--ASTPCRNGAKCVDQ---PDGYECRCAEGFEGTLCDRNVDDCSPDPCHHGRCVDGIASFSCACAPGYTGTRCESQV 583 HSP 7 Score: 93.2041 bits (230), Expect = 1.401e-18 Identity = 76/244 (31.15%), Postives = 97/244 (39.75%), Query Frame = 2
Query: 224 ICLNVMDAILCFLLIFFVGLNSTNASSDACHPHPCNNGTCSQAQSNFTCICHDGWEGRLCEIPKCTLKCNHSKAQCNFRSPGKEQFCQ-------------CTIA-GMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAA---NCG-----NGQCINKFNDYTCTCHDGYTGKNCETKI 889
+C C L F G D C PC NG Q+ C+C GW GRLC+I +L C + AQ R EQ CQ C G TG+ CE +++ C + + H G C G Y C C Y G C D D C S C +CI+ + Y C C G G C+ D+C + G NG C++ + CTC GYTG CE I
Sbjct: 976 VCSAAHPGFRCTCLESFTGPQCQTLV-DWCSRQPCQNGG-RCVQTGAYCLCPPGWSGRLCDIR--SLPCREAAAQIGVR---LEQLCQAGGQCVDEDSSHYCVCPEGRTGSHCEQEVDPC-LAQPCQHGGTCRGYMGGYMCECLPGYNGDNCEDDVDEC--ASQPCQHGGSCIDLVAR---YLCSCPPGTLGVLCEINEDDCGPGPPLDSGPRCLHNGTCVDLVGGFRCTCPPGYTGLRCEADI 1206 HSP 8 Score: 87.4261 bits (215), Expect = 7.015e-17 Identity = 64/234 (27.35%), Postives = 104/234 (44.44%), Query Frame = 2
Query: 227 CLNVMDAILCFLLIFFVGLNSTNASSDACHPHPCNNGTCSQAQSNFTCICHDGWEGRLCE--IPKC-TLKCNHSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGECENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATCINEINSPEGYKCVCRNGYTGKYCDALVDNCAAANCGNGQCINKFNDYTCTCHDGYTGKNCETKIKNESCPYDDC 919
C++ D C F G + + D C P PC++G C ++F+C C G+ G CE + +C + C H + + C+C +G TG +CE +I++C C G C + Y C C +TGP CN + C S+ C + +C++ N G++C+C G C CA C +G C + + C C G++G C + ++C C
Sbjct: 522 CVDQPDGYECRCAEGFEG-TLCDRNVDDCSPDPCHHGRCVDGIASFSCACAPGYTGTRCESQVDECRSQPCRHGGKCLDLV---DKYLCRCP-SGTTGVNCEVNIDDC--ASNPCTFGVCRDGINRYDCVCQPGFTGPLCNVEINEC--ASSPCGEGGSCVDGEN---GFRCLCPPGSLPPLCLPPSHPCAHEPCSHGICYDAPGGFRCVCEPGWSGPRCSQSLARDACESQPC 743 HSP 9 Score: 85.8853 bits (211), Expect = 1.893e-16 Identity = 78/222 (35.14%), Postives = 107/222 (48.20%), Query Frame = 2
Query: 254 CFLLIFFVGLNSTNASSDACHPHPC-NNGTCSQAQSNFTCICHDGWEGRLC--EIPKCTLKCN--HSKAQCNFRSPGKEQFCQCTIAGMTGASCESDINECNITETICHHGE-CENTPGSYKCHCDDFYTGPTCNDREDTCNTKSNKCHQNATC-INEINSPEGYKCVCRNGYTGKYCDALVDNCA--AANCGN-GQCINKFNDYTCTCHDGYTGKNCETKI 889
C L F G N + D C H C N GTC + + C C W G+ C ++ +C L+ N H+ C F + G C C + G TG SC +I++C +C HG C + S+ C C TG C+ +D C SN CH++A C N +N C C G+TG CD VD C+ A C + G+C+N + C C GYTG CET +
Sbjct: 222 CACLPGFEGQN-CEVNVDDCPGHRCLNGGTCVDGVNTYNCQCPPEWTGQFCTEDVDECQLQPNACHNGGTC-FNTLGGHS-CVC-VNGWTGESCSQNIDDC--ATAVCFHGATCHDRVASFYCACPMGKTGLLCH-LDDAC--VSNPCHEDAICDTNPVNG--RAICTCPPGFTGGACDQDVDECSIGANPCEHLGRCVNTQGSFLCQCGRGYTGPRCETDV 432 The following BLAST results are available for this feature:
BLAST of TCONS_00007324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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