|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007322 ID=TCONS_00007322|Name=TCONS_00007322|organism=Clytia hemisphaerica|type=transcript|length=329bp
CCAATGAAAGAGGTTTTGCAATGACAATAATCTAAGATGTCACGAGATAC
TAATCGAATGTTATGCATCGTTTTCATCTGGTTACCTAGGTGAATAGTAA
AACTTTCTTCCATCATTGTTTCCTGGAGCTGTATCGAATCAAATGTTCCC
GCCACGTAACTTTCCATCGAAGGCGACCGTGTTGTCCTGGTAACCACGTC
ATCACTAGCTGAATTAACGCTGATGTCGGCAGTACTTCGTTCGTGAACGT
TCATTACCCATTCTTTGTATTctcgtttttgtttttcttgtaaTTCAGAT
ATGGCACTTGACCAGTAAATTTCCTGCAT Run BLAST on NCBI transcript from alignment at sc0000075:489248..492017- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007322 ID=TCONS_00007322|Name=TCONS_00007322|organism=Clytia hemisphaerica|type=transcript|length=2770bp|location=Sequence derived from alignment at sc0000075:489248..492017- (Clytia hemisphaerica)
CCAATGAAAGAGGTTTTGCAATGACAATAATCTAAGATGTCACGAGATAC
TAATCGAATGTTATGCATCGTTTTCATCTGGTTACCTAGGTGAGAGCGAA
ATAAGATTTTCACATTTCCATTTAGAGGGCCATAATTTACTTGCTTTGAA
GGGTCTAGCCTCCAAAAGTAAGTAGAAACCAATCACCAAAGAAATCATGA
AGATACAAAGACCCTAAGTGTGTCATTTTCCTAACATTAATATAAAAATG
CAATTAAATTGTTGAAACTTATAATCTGAAGGTGTAAGAAAGCTAAGGAG
CGCGGAAATTACTAATCAGAGGTTGTCTTTCGGCTCCCCCCCCAAAAAAT
CGGCCGCTCGGGAGGGGGTAACCGCGGTGGCATTGCTATTGACATTGAAA
CCACAGACATAGTGGTGTTTTTAAAGAAAACCTTGGTGTAGCACCTTTTA
TATTTACACTAAAATATGTATCGCACATGGTGATAAAATGATCAAGGGAA
TGAGATGAAAAAGTAAAACAATCAAAATTGCTACCACATTCCTAAATTTG
TAACTTCTTCGCTGTCAATAAGCGGTCAAGAGATCAAAAACTGTTGAATA
GGACTATGAAACTGACCGTCAAAACCTGCAGTTCTGAAAGTCGATAGGTT
CAAATCCTTGAACTAGTTTCAATTTCAAAATAATCCTCCTACAAGGACGG
TCGAGTAGTAGAATCTAAGGGTCTTCGTTTTTCTCCTTTGTTGTTTACCA
GGTTAATCTTTGAAAGTGCCATTCAACAAGCTTTGGTTTTTGGGGTCAAA
CTTCACGACTCTTCTGTTAAGTATCTTACAGAACAAATTGTTATAAAAGA
CGTAAAAATGAAATTTTAAAAATCATCTACAGCTTAAACAAACCAAGTCA
AAGCTAGAAGATCATTGAAGCCTCGTCTTTAAATCGTCGAAATATCAGCA
AAAATGGCTCAACGAGAAACAGGATCGAAATATGCCATCAAACTTAAACC
GAACTTTGATCATCCAAAATGGATCAATAGACATAGATTTATGTTCAACT
TTTTGGACATCAACGGTAACGGAAAAATCACTTTGGATGAGATTGTCTCC
AAAGCTTCGGATGATATCTGCGCCAAATTGAACGCAACAACAGAACAAAC
ACAACGTCATCAAGATGCTGTTGAAGCTTTCTTTAAAGCCATTGGTATGG
ATTACGGCAAAGAAGTTGAATTCCCAGAATTCCCTGAAGGATGGAAACGA
CTTGCTACCAAACGATTTGAAGTTATGGTCTCAAAACAAGACCACTTTGA
TTCGCCGATGGGGAGATGTTGTTTTCGACATTTTCGATAAAGATGGAAGC
GGTACAATCAGTTTGGACGAATGGAAAGCTTACGGAAGAGTCTCCNGCTA
CCAACGATTTGAAGTTATGGTCTCAAAACAAGACCACTTTGATTCGCCGC
TGGGGAGATGTTGTTTTCGACATTTTCGATAAAGATGGAAGCGGTACAAT
CAGTTTGGACGAATGGAAAGCTTATGGAAGAGTCTCCGGAATCTGTGCAT
CAGACGCAGACGCCGAGCAGACCTTCAAACATTGCGATTTGGACAACAGT
GGCAAACTTGATGTTGATGAGATGACCAGACAACATTTAGGATTCTGGTA
CACCTTGGATCCACAAGCTGATGGTCTTTATGGAAATTTCGTTCCTTAAA
ATATTCTTGTACTGAATGAACTTTATTTAATATTATCCTGTGTAGGCTAC
ATTTCATAGGACCCGTTTTCTAAACACATTAAATACATTAATATCATTAA
GACGTCAATATTTCGTCCAAGTTTCATTTCTACACTTCGTTATCAAGTTA
AATCAATTTTTAAGCAGTATCGTGATGGCAGGGAAGGCCAACTCCCCCCC
CCCCCTCCAGCACCCGAAAGACAAGGGTTGGAAAAAAGGCGTCTCTGATT
ATTAATTTTGGCCACTTTGCTTTTTTACACTTAAGCCAAAATTAGAAAAA
CACCACAAAACTTTCGTGCTCGCTTCGTTCGCGTATATTTTACAAATAAA
TTTTACTTTTAAAAGAGACCGCCAAAATCCCAACTTTTAAAAATTGCCTC
CCCATCCTTCATCATCATCATCCTTTGATCTAGGTCTTTAAAGACCTAGA
TCGAAAAAAGACCAAGGTCGGAAACATACAATAACCCTCCCTCCACAGCT
CACGGTCAACCATCGCTGTCTCCAGTTCTCCTAACTCAAGCCCTGTTGTT
CTTTTCAAAATATCTAAAAAGGTATTATATTAGTAATTAACTGAAATAAA
TATTCAATGAAGTAGTAAATCAAAGTAAAAAAAATCAATTTTAATCGGAA
AATGTCACGACTCGGTTTTTAGAATATCCTTTTAACAAACTTTGAAACTA
ACTTTTAATTTTTGAAATCTTCGTAATATTTCGAGATATTACTTTAAAAG
ACTACACTTCAAAATGATGATTGAGAATCTACGAATACCTTTCCAACCTC
ATGATAAATATAGAAATGAGTTTTACCTAGGTGAATAGTAAAACTTTCTT
CCATCATTGTTTCCTGGAGCTGTATCGAATCAAATGTTCCCGCCACGTAA
CTTTCCATCGAAGGCGACCGTGTTGTCCTGGTAACCACGTCATCACTAGC
TGAATTAACGCTGATGTCGGCAGTACTTCGTTCGTGAACGTTCATTACCC
ATTCTTTGTATTCTCGTTTTTGTTTTTCTTGTAATTCAGATATGGCACTT
GACCAGTAAATTTCCTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007322-exon-sc0000075-1575043694:491929..492017 | TCONS_00007322-exon-sc0000075-1575043694:491929..492017 | Clytia hemisphaerica | exon |
| TCONS_00007322-exon-sc0000075-1575043694:489248..489487 | TCONS_00007322-exon-sc0000075-1575043694:489248..489487 | Clytia hemisphaerica | exon |
| TCONS_00007322-exon-sc0000075-1510915933:491929..492017 | TCONS_00007322-exon-sc0000075-1510915933:491929..492017 | Clytia hemisphaerica | exon |
| TCONS_00007322-exon-sc0000075-1510915933:489248..489487 | TCONS_00007322-exon-sc0000075-1510915933:489248..489487 | Clytia hemisphaerica | exon |
| TCONS_00007322-exon-sc0000075-1491911889:491929..492017 | TCONS_00007322-exon-sc0000075-1491911889:491929..492017 | Clytia hemisphaerica | exon |
| TCONS_00007322-exon-sc0000075-1491911889:489248..489487 | TCONS_00007322-exon-sc0000075-1491911889:489248..489487 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:489248..492017 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019311 | DUF2362 |
Blast
The following BLAST results are available for this feature:
|
