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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007304 ID=TCONS_00007304|Name=TCONS_00007304|organism=Clytia hemisphaerica|type=transcript|length=2325bpRun BLAST on NCBI protein sequence of TCONS_00007304-protein >TCONS_00007304-protein ID=TCONS_00007304-protein|Name=TCONS_00007304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=657bp MTTDCLASNRMVVIEDDDHNSKPRQPINIDVSLAVEKEMTIALTGKPPHTRun BLAST on NCBI transcript from alignment at sc0000075:300499..303863- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007304 ID=TCONS_00007304|Name=TCONS_00007304|organism=Clytia hemisphaerica|type=transcript|length=3365bp|location=Sequence derived from alignment at sc0000075:300499..303863- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:300499..303863- >TCONS_00007304 ID=TCONS_00007304|Name=TCONS_00007304|organism=Clytia hemisphaerica|type=CDS|length=5922bp|location=Sequence derived from alignment at sc0000075:300499..303863- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007304 vs. Swiss-Prot (Human)
Match: ZNF92 (Zinc finger protein 92 OS=Homo sapiens GN=ZNF92 PE=2 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 3.881e-47 Identity = 96/238 (40.34%), Postives = 135/238 (56.72%), Query Frame = 2
Query: 347 IALTGKPPH----TNKIIQRVSD--QLTLISTGDDDKFKTVVHHHCDECQKVFVTSTQFKRHSFEVHQITHPFKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFSNSGNFSKHKRQHFED 1042
I TG+ P+ K R S+ + +I TG+ + C+EC K F S+ +H +H P+KC C K F +ILN H R H ++K Y C ECG++F S ++H + H+G P+ C+ECGKAF +L H IH +K ++C+ECGK F + S T+H R HTGEKP+KC+ C KAF + EH+ +H EKP+ C+ CG +FS S F+KHKR H ED
Sbjct: 221 IIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKP-------YKCEECGKAFNRSSTLTKHK-RIHTEEKPYKCEECGKAFNQFSILNKHKRIHMEDKPYKCEECGKAFRVFSILKKHKIIHTGEKPYKCEECGKAFNQFSNLTKHKIIHTGEKPYKCDECGKAFNQSSTLTKHKRIHTGEKPYKCEECGKAFKQSSTLTEHKIIHTGEKPYKCEKCGKAFSWSSAFTKHKRNHMED 450 HSP 2 Score: 157.532 bits (397), Expect = 1.537e-40 Identity = 81/192 (42.19%), Postives = 110/192 (57.29%), Query Frame = 2
Query: 458 HHCDECQKVFVTSTQFKRHSFEVHQITHPFKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFSNSGNFSKHKRQH 1033
+ C+EC K F S+ +H +H P+KC C K F + L H H EK Y C ECG++F ST +H H+ P+ C+ECGKAF L H +IH+ DK ++CEECGK F S +H HTGEKP+KC+ C KAF++ N +H+ +H EKP+ CD CG +F+ S +KHKR H
Sbjct: 201 YKCEECGKAFNWSSTLTKHKI-IHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKPYKCEECGKAFNRSSTLTKHKRIHTEEKPYKCEECGKAFNQFSILNKHKRIHMEDKPYKCEECGKAFRVFSILKKHKIIHTGEKPYKCEECGKAFNQFSNLTKHKIIHTGEKPYKCDECGKAFNQSSTLTKHKRIH 391 HSP 3 Score: 155.992 bits (393), Expect = 5.374e-40 Identity = 80/197 (40.61%), Postives = 111/197 (56.35%), Query Frame = 2
Query: 458 HHCDECQKVFVTSTQFKRHSFEVHQITHPFKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFSNSGNFSKHKRQHFEDNS 1048
+ C+EC K F + K+H +H P+KC C K F + L H H EK Y C ECG++F ST +H H+G P+ C+ECGKAF L H IH +K ++CE+CGK F S +T+H R H +KP+KC+ C KAFS +H+ +H +EKP+ C+ CG +F+ S F+KHK H E S
Sbjct: 313 YKCEECGKAFRVFSILKKHKI-IHTGEKPYKCEECGKAFNQFSNLTKHKIIHTGEKPYKCDECGKAFNQSSTLTKHKRIHTGEKPYKCEECGKAFKQSSTLTEHKIIHTGEKPYKCEKCGKAFSWSSAFTKHKRNHMEDKPYKCEECGKAFSVFSTLTKHKIIHTREKPYKCEECGKAFNQSSIFTKHKIIHTEGKS 508 HSP 4 Score: 154.451 bits (389), Expect = 2.094e-39 Identity = 79/192 (41.15%), Postives = 107/192 (55.73%), Query Frame = 2
Query: 458 HHCDECQKVFVTSTQFKRHSFEVHQITHPFKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFSNSGNFSKHKRQH 1033
+ C+EC K F + +H +H P+KC C K F +IL H H EK Y C ECG++F S +H + H+G P+ CDECGKAF L H +IH +K ++CEECGK F + S T H HTGEKP+KC+ C KAFS +H+ H ++KP+ C+ CG +FS +KHK H
Sbjct: 285 YKCEECGKAFNQFSILNKHK-RIHMEDKPYKCEECGKAFRVFSILKKHKIIHTGEKPYKCEECGKAFNQFSNLTKHKIIHTGEKPYKCDECGKAFNQSSTLTKHKRIHTGEKPYKCEECGKAFKQSSTLTEHKIIHTGEKPYKCEKCGKAFSWSSAFTKHKRNHMEDKPYKCEECGKAFSVFSTLTKHKIIH 475 HSP 5 Score: 145.206 bits (365), Expect = 2.228e-36 Identity = 72/189 (38.10%), Postives = 107/189 (56.61%), Query Frame = 2
Query: 458 HHCDECQKVFVTSTQFKRHSFEVHQITHPFKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFSNSGNFSKHK 1024
+ C+EC K F + +H +H P+KC C K F + L H R H EK Y C ECG++F ST +H + H+G P+ C++CGKAF+ H + H+ DK ++CEECGK F S T+H HT EKP+KC+ C KAF++ +H+ +H + K + C+ CG++F+ S N + K
Sbjct: 341 YKCEECGKAFNQFSNLTKHKI-IHTGEKPYKCDECGKAFNQSSTLTKHKRIHTGEKPYKCEECGKAFKQSSTLTEHKIIHTGEKPYKCEKCGKAFSWSSAFTKHKRNHMEDKPYKCEECGKAFSVFSTLTKHKIIHTREKPYKCEECGKAFNQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARK 528 HSP 6 Score: 140.969 bits (354), Expect = 6.628e-35 Identity = 73/190 (38.42%), Postives = 104/190 (54.74%), Query Frame = 2
Query: 464 CDECQKVFVTSTQFKRHSFEVHQITHPFKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFSNSGNFSKHKRQH 1033
C K F +Q +H ++H + +KC C K F + L H H EK Y C ECG++F S +H + H+G P+ C+ECGKAF L H +IH +K ++CEECGK F + S +H R H +KP+KC+ C KAF K+H+ +H EKP+ C+ CG +F+ N +KHK H
Sbjct: 175 CKNRGKSFCMLSQLTQHK-KIHTREYSYKCEECGKAFNWSSTLTKHKIIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKPYKCEECGKAFNRSSTLTKHKRIHTEEKPYKCEECGKAFNQFSILNKHKRIHMEDKPYKCEECGKAFRVFSILKKHKIIHTGEKPYKCEECGKAFNQFSNLTKHKIIH 363 HSP 7 Score: 139.428 bits (350), Expect = 1.944e-34 Identity = 76/190 (40.00%), Postives = 105/190 (55.26%), Query Frame = 2
Query: 464 CDECQKVFVTSTQFKRHSFEVHQITHPFKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFSNSGNFSKHKRQH 1033
CD+ KVF R+ H PFKC K F + L H + H E +Y C ECG++F ST +H + H+G P+ C+ECGKAF +L H IH +K ++CEECGK F R S T+H R HT EKP+KC+ C KAF++ +H+ +H ++KP+ C+ CG +F KHK H
Sbjct: 147 CDKYVKVFHKFPNVNRNKIR-HTGKKPFKCKNRGKSFCMLSQLTQHKKIHTREYSYKCEECGKAFNWSSTLTKHKIIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKPYKCEECGKAFNRSSTLTKHKRIHTEEKPYKCEECGKAFNQFSILNKHKRIHMEDKPYKCEECGKAFRVFSILKKHKIIH 335 HSP 8 Score: 131.724 bits (330), Expect = 6.029e-32 Identity = 71/192 (36.98%), Postives = 105/192 (54.69%), Query Frame = 2
Query: 458 HHCDECQKVFVTSTQFKRHSFEVHQITHPFKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICD-LCGDSFSNSGNFSKHKRQ 1030
+ C+EC K F S+ H +H P+KC C K F+ + H R H ++K Y C ECG++F+ ST +H + H+ P+ C+ECGKAF H IH K+++CE+CG F + SN T +TGEKP+K + C KAF++ H+ ++ EKP C CG +F+ S N++K K Q
Sbjct: 397 YKCEECGKAFKQSSTLTEHKI-IHTGEKPYKCEKCGKAFSWSSAFTKHKRNHMEDKPYKCEECGKAFSVFSTLTKHKIIHTREKPYKCEECGKAFNQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTGEKPYKYEECDKAFNKFSTLITHQIIYTGEKP--CKHECGRAFNKSSNYTKEKLQ 585 HSP 9 Score: 128.257 bits (321), Expect = 8.979e-31 Identity = 68/166 (40.96%), Postives = 95/166 (57.23%), Query Frame = 2
Query: 545 FKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFSNSGNFSKHKRQHFED 1042
F+C K F +N + H +K + C+ G+SF +S QH H+ + C+ECGKAF L H IH +K ++CEECGK F R SN T+H HTGEKP+KC+ C KAF+R +H+ +H +EKP+ C+ CG +F+ +KHKR H ED
Sbjct: 145 FQCDKYVKVFHKFPNVNRNKIRHTGKKPFKCKNRGKSFCMLSQLTQHKKIHTREYSYKCEECGKAFNWSSTLTKHKIIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKPYKCEECGKAFNRSSTLTKHKRIHTEEKPYKCEECGKAFNQFSILNKHKRIHMED 310 HSP 10 Score: 126.716 bits (317), Expect = 2.408e-30 Identity = 74/231 (32.03%), Postives = 117/231 (50.65%), Query Frame = 2
Query: 323 LAVEKEMTIALTGKPPHTNKIIQRVSDQLT------LISTGDDDKFKTVVHHHCDECQKVFVTSTQFKRHSFEVHQITHPFKCTVCEKCFTTDAILNTHLRTHKDEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFS 997
++ K+ I TG+ P+ + + +Q + +I TG+ + CDEC K F S+ +H +H P+KC C K F + L H H EK Y C +CG++F+ S + +H H P+ C+ECGKAF+ L H IH +K ++CEECGK F + S +T+H HT K +KC+ C AF++ N + ++ EKP+ + C +F+
Sbjct: 325 FSILKKHKIIHTGEKPYKCEECGKAFNQFSNLTKHKIIHTGEKP-------YKCDECGKAFNQSSTLTKHK-RIHTGEKPYKCEECGKAFKQSSTLTEHKIIHTGEKPYKCEKCGKAFSWSSAFTKHKRNHMEDKPYKCEECGKAFSVFSTLTKHKIIHTREKPYKCEECGKAFNQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTGEKPYKYEECDKAFN 547 HSP 11 Score: 112.849 bits (281), Expect = 8.184e-26 Identity = 57/142 (40.14%), Postives = 82/142 (57.75%), Query Frame = 2
Query: 617 DEKAYLCRECGRSFTHISTWRQHLMRHSGATPHICDECGKAFATKGDLATHSKIHLPDKAFRCEECGKTFPRKSNYTRHMRKHTGEKPFKCQYCQKAFSRMENCKEHENLHRKEKPFICDLCGDSFSNSGNFSKHKRQHFED 1042
D K + C + + F ++ +RH+G P C GK+F L H KIH + +++CEECGK F S T+H HTGEKP+KC+ C KAF+R N +H+ +H EKP+ C+ CG +F+ S +KHKR H E+
Sbjct: 141 DSKIFQCDKYVKVFHKFPNVNRNKIRHTGKKPFKCKNRGKSFCMLSQLTQHKKIHTREYSYKCEECGKAFNWSSTLTKHKIIHTGEKPYKCEECGKAFNRSSNLTKHKIIHTGEKPYKCEECGKAFNRSSTLTKHKRIHTEE 282 The following BLAST results are available for this feature:
BLAST of TCONS_00007304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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