TCONS_00007297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007297
Unique NameTCONS_00007297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007297 ID=TCONS_00007297|Name=TCONS_00007297|organism=Clytia hemisphaerica|type=transcript|length=900bp
aatggttgttaaaaaattgtgagtttGACTGTCTAGTTTATGTTCTTTct
tgatttaaatttttatttcatctttttttacCACTAGAAAGAAATAAGAG
TATATTTTAATCAAATGTTCAAGCACTACATCAAAGTGCTATGGATTTAC
ACACTTAGCTTTGGGTTCGATGTTATAGCAGAGGAAACAAAATGTATTCT
TCTCAAACAAAGCTGTCTGGATAAAGAGTGTGGCAATTGTCTACAGCTTT
CAACACAGGGGAAATTTAACCAAGCAGTACGATTATGTGGAAATTCATCA
TTCACAAGTTGTCTGATAGAGAATTGCTTAAAAGACAACACTGATTGTGT
TCACGTACAACAAGACAGAGAAGTTGGTGGAATCGATAAAACAATAGTGA
TAACTTCATCGGTGGCTTGTTTTACACTTCTAGTagttgtgtttttgttt
ttctatcgATTTGTGAATCGCACTTCTTTATCAAGAACTAAAAACAAGAA
AGTCGTGAATTTGGAAAAGAAAGAGGAAATTTTTGATACCCCCATTAAAA
TGAGAGATATAGAAGAAGGTTGTGTTGAAAATGTTCCAATCAAATCGATT
TGGAGTAATGTTTATATTACAAAGCTGGAAGATTACGAAACGTCAGAAGA
TGAAAACTAGAAAGTTTTTCgtttaagtcattaaaaaacTCAAAGTGTAA
ATATTTCTGTAGATAAATTTATATATTCCCTGGAACATCACAACTACCTT
TCATGCTCTCTGAGGAAAAAATATGGGCCCCCGGCCACAGTGATACTAAT
AGTCCTTTTTTTAACggttaaggtggtagtctactgagaaatggaaaatc
atcgaaaaaattgtcgaattttggtttttgggtgttttgagatccttagg
Run BLAST on NCBI

protein sequence of TCONS_00007297-protein

>TCONS_00007297-protein ID=TCONS_00007297-protein|Name=TCONS_00007297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MFKHYIKVLWIYTLSFGFDVIAEETKCILLKQSCLDKECGNCLQLSTQGK
FNQAVRLCGNSSFTSCLIENCLKDNTDCVHVQQDREVGGIDKTIVITSSV
ACFTLLVVVFLFFYRFVNRTSLSRTKNKKVVNLEKKEEIFDTPIKMRDIE
EGCVENVPIKSIWSNVYITKLEDYETSEDEN
Run BLAST on NCBI

transcript from alignment at sc0000075:215627..219545-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007297 ID=TCONS_00007297|Name=TCONS_00007297|organism=Clytia hemisphaerica|type=transcript|length=3919bp|location=Sequence derived from alignment at sc0000075:215627..219545- (Clytia hemisphaerica)
AATGGTTGTTAAAAAATTGTGAGTTTGACTGTCTAGTTTATGTTCTTTCT
TGATTTAAATTTTTATTTCATCTTTTTTTACCACTAGAAAGAAATAAGAG
TATATTTTAATCAAATGTTCAAGCACTACATCAAAGTGCTATGGATTTGT
AAGTACTTCATATACTATTTCTTTATTTTATACCTGAAGCTCTTTGTACA
TTATATTGGTATTGAAGTTTGCGGGTTACAAAGTTTCGCGAGTACTTAAT
TTCGCAAAATTTAATACCGTTTAAATTTTTCAAAATAGGCCGAAAATCGA
AAATACTTATTTGTCACACTTAGTTACTATTTTTGGTATGTTTACACCCA
ATAAGTTTTGTTTCAAGCGAAATTAGGATCACAATAAAAAATAGTGTGAC
ATTTTGAAAAATGCCCAAAAACAACGTTGTCGTTGTCATAGCTGATGAAG
TCTTCTTGACAAGTCTTGAAATTTTACAATGTTGTGGGAAATACATGTTT
TTTTTTTATAAGCAAGTATCTGTCCCTATGTCAGGCTCGCATTATGCTTA
GCATTCTATTGTTCTCAAACAATAGAGCCATTGTTTAGGTATCAAAAACT
GAGCCTGCATATGCTTATAAACGTTATGCTTATAAAAAAACCCTTACTAA
GACATTATGAATGAAATTTTCTTTTTCGTTAATTGGGCTAAAAATGTGGC
TTCAACTCAAAATCTTTTTTAGAAATGTACTCTTAGGTGCCAAATAAACG
GGTCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCTCGGACGT
TATTAGGACCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCGGTAATTAGGTCCCCCCC
GTTTATTTGATTTGAAAATTTTTTCGAACCCCCCCGTTTATTCGAACCCC
CCCGTTTTTTTGGCACCTAAGAGTAAGCCACACAAATTAGATAAGAGATA
TTAGAATGGGACTTTCTTAACTTGACAGAGGAAAGGTTGAATTAAAAAAA
GTTAAATGTACATACTTTCTAGCTATTAAATATACTTTTTTGTGGCTTGC
TTTTCGATAATTTTTAACGTGACTTTGTAAGCCACAAAATTGTACTTACA
ACAAAATTTTTGTAATTTTTTACACCTACTGGTGTTATACTTTAATGATT
GAGTGCCAAAAACTTAAAAAATGTTAAACATGAGATTTCATCTATATTTC
ACCTACACCTGTATTCACCTATTCGCCTACATTTCCCTTGCGTAAGCCAC
ATTTTTGCCCACTTAACAAACTGTAAGCCAGAAATCAGTGCAGCTAGTGA
AAAATTTAGCCCTTTGCTTGCAATGCTGAAAAGAAAGTATATTTCTGACT
GTTTCCATTATTGAGAACTCAGCCAACAAAATTTCTTGGTAGTGTAAGCC
ACATGACAAGTAAGCCACATTTTTGCCTGCACTTCATTTGCTTGTAACTC
CCCTTAAGTAAGCCACTAAAATTCGCCCTTTATGCAATGGATAGCTAATT
TCCTTAGCTTAACCATCAAAGCGATCCTAAGAGTAAGCCACATGATTTTC
CCAAGTTATGGTCAAATTAGTGGCTGACAGTAAAAATGTCACAAAACAGA
GGTTTATTTTTGATTGGGATCCCTAAAGTCATTTTCTTTCACATTTTGAA
AATTTCCAAAAAACTTGTAATCGCGAAATTTATTACACACGAAACACGTT
TACTCAAAAGAATTTCGTGATAACCCGCGAATTAATACCCATAAGGTGTT
TAGTTTTGGTAGTACTTTTTGCACATGTATAAAATTTCCGCTAAATTGAC
ATCAATTGTTTAAAAATTGTTAAATTAGTTTTTAAGTTACAAATTATGGA
ATGTTTTCATTTTATTTATAGACACACTTAGCTTTGGGTTCGATGTTATA
GCAGAGGAAACAAAATGTATTCTTCTCAAACAAAGCTGTCTGGATAAAGA
GTGTGGCAATTGTCTACAGCTTTCAACACAGGGGAAATTTAACCAAGCAG
TACGATTATGTGGAAATTCATCATTCACAAGTTGTCTGATAGAGAATTGC
TTAAAAGACAACACTGATTGTGTTCACGTACAACAAGGTAATCAATCATA
TCATTCACATCAACTAAGATTGCAATTCTACCAAAAATTTTAATTCATAT
TTTAGTGAGAGCCTGAAGAATTCTGAAAGCATCCTTCGTGTGCACAGAGT
TGTTAAAAGCAAACTAACTTTTTTAAATGATCAATTAGGTCCATAAGATC
ACAAAAACGAGTGATGAGAAAAATTTTGACCATTAGGGCGGTCCCCATGT
GACGTCATCACTTTTGTGAAGTGAAAATTAGAAGCTCATATATGGCTCAA
ATGAAAGATATTTATCCAAGGATTGCAAAAAAAATCATAACATATGTACC
TGAAAATCAATATTTGAGAAGCTATAAAGGAAAATAGCTTAAAAAATGAC
GTCATCGACAATAAAAGAATCGTCAAATTCGAAAAATTTTTGTTTCGTTT
GAAAGAGGACCATCTAGTGAACAAAAAATATTACTACAAAAAAATCTGAA
TTTCTCCTTATAAGCTGTCAGGAGCAAATTTGTAATTCATTAAATTTGCC
TGCGAAAGGTAAGCTTCGGGCACGCCCAGGAATCTTTAAAAAGCTTGAGA
GTCAAGTCAGACGCTTTTCACAGAATAATTTCCTATCAAGTGAAATTCAA
GGTTTTCCGTAGTAATAGTTTTTGTTCCCAAGCAGGTCCTCTTTTCAAAT
TTTTTTGCTCACTCGCCAAAATAAGTTCCCGTCAAAATTAAATTTTTTGT
TTCCTTGCCTAAATAACCCCTGAAATTCATCAAAATCGCTAGAAATAAGG
CAAAATAGAACATATTTACGCTGTCATTCGCCAAAATTAGTTCCCGCCAA
AATTAAAAAAATTCTCTATTCGCCAAAATAAGTTCCCGCCAAAATTAAAA
TTTTTTAGGATATTTGCTGCCCGCCAAAATAAGTTCACGCCGAAAAAAGT
TCCCTTAAGGTAGTTTCTCCTCTCAAAACATGTCCAAAAGATGATTTTTA
ATTTATTTTGTAGAAACCATACAAATTGTAATTTTGGAAAAATCACTCTC
CAGCTAAAGTAGAAACTATTCTTTTCTTATTAGACAGAGAAGTTGGTGGA
ATCGATAAAACAATAGTGATAACTTCATCGGTGGCTTGTTTTACACTTCT
AGTAGTTGTGTTTTTGTTTTTCTATCGATTTGTGAATCGCACTTCTTTAT
CAAGAACTAAAAACAAGAAAGTCGTGAATTTGGAAAAGAAAGAGGAAATT
TTTGATACCCCCATTAAAATGAGAGATATAGAAGAAGGTTGTGTTGAAAA
TGTTCCAATCAAATCGATTTGGAGTAATGTTTATATTACAAAGCTGGAAG
ATTACGAAACGTCAGAAGATGAAAACTAGAAAGTTTTTCGTTTAAGTCAT
TAAAAAACTCAAAGTGTAAATATTTCTGTAGATAAATTTATATATTCCCT
GGAACATCACAACTACCTTTCATGCTCTCTGAGGAAAAAATATGGGCCCC
CGGCCACAGTGATACTAATAGTCCTTTTTTTAACGGTTAAGGTGGTAGTC
TACTGAGAAATGGAAAATCATCGAAAAAATTGTCGAATTTTGGTTTTTGG
GTGTTTTGAGATCCTTAGG

Coding sequence (CDS) from alignment at sc0000075:215627..219545-

>TCONS_00007297 ID=TCONS_00007297|Name=TCONS_00007297|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000075:215627..219545- (Clytia hemisphaerica)
ACAGAGAAGTTGGTGGAATCGATAAAACAATAGTGATAACTTCATCGGTG
GCTTGTTTTACACTTCTAGTAGTTGTGTTTTTGTTTTTCTATCGATTTGT
GAATCGCACTTCTTTATCAAGAACTAAAAACAAGAAAGTCGTGAATTTGG
AAAAGAAAGAGGAAATTTTTGATACCCCCATTAAAATGAGAGATATAGAA
GAAGGTTGTGTTGAAAATGTTCCAATCAAATCGATTTGGAGTAATGTTTA
TATTACAAAGCTGGAAGATTACGAAACGTCAGAAGATGAAAACTAGACAC
ACTTAGCTTTGGGTTCGATGTTATAGCAGAGGAAACAAAATGTATTCTTC
TCAAACAAAGCTGTCTGGATAAAGAGTGTGGCAATTGTCTACAGCTTTCA
ACACAGGGGAAATTTAACCAAGCAGTACGATTATGTGGAAATTCATCATT
CACAAGTTGTCTGATAGAGAATTGCTTAAAAGACAACACTGATTGTGTTC
ACGTACAACAAGATGTTCAAGCACTACATCAAAGTGCTATGGATTTACAG
AGAAGTTGGTGGAATCGATAAAACAATAGTGATAACTTCATCGGTGGCTT
GTTTTACACTTCTAGTAGTTGTGTTTTTGTTTTTCTATCGATTTGTGAAT
CGCACTTCTTTATCAAGAACTAAAAACAAGAAAGTCGTGAATTTGGAAAA
GAAAGAGGAAATTTTTGATACCCCCATTAAAATGAGAGATATAGAAGAAG
GTTGTGTTGAAAATGTTCCAATCAAATCGATTTGGAGTAATGTTTATATT
ACAAAGCTGGAAGATTACGAAACGTCAGAAGATGAAAACTAGACACACTT
AGCTTTGGGTTCGATGTTATAGCAGAGGAAACAAAATGTATTCTTCTCAA
ACAAAGCTGTCTGGATAAAGAGTGTGGCAATTGTCTACAGCTTTCAACAC
AGGGGAAATTTAACCAAGCAGTACGATTATGTGGAAATTCATCATTCACA
AGTTGTCTGATAGAGAATTGCTTAAAAGACAACACTGATTGTGTTCACGT
ACAACAAGATGTTCAAGCACTACATCAAAGTGCTATGGATTTACAGAGAA
GTTGGTGGAATCGATAAAACAATAGTGATAACTTCATCGGTGGCTTGTTT
TACACTTCTAGTAGTTGTGTTTTTGTTTTTCTATCGATTTGTGAATCGCA
CTTCTTTATCAAGAACTAAAAACAAGAAAGTCGTGAATTTGGAAAAGAAA
GAGGAAATTTTTGATACCCCCATTAAAATGAGAGATATAGAAGAAGGTTG
TGTTGAAAATGTTCCAATCAAATCGATTTGGAGTAATGTTTATATTACAA
AGCTGGAAGATTACGAAACGTCAGAAGATGAAAACTAGACACACTTAGCT
TTGGGTTCGATGTTATAGCAGAGGAAACAAAATGTATTCTTCTCAAACAA
AGCTGTCTGGATAAAGAGTGTGGCAATTGTCTACAGCTTTCAACACAGGG
GAAATTTAACCAAGCAGTACGATTATGTGGAAATTCATCATTCACAAGTT
GTCTGATAGAGAATTGCTTAAAAGACAACACTGATTGTGTTCACGTACAA
CAAGATGTTCAAGCACTACATCAAAGTGCTATGGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004095XLOC_004095Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007297-proteinTCONS_00007297-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007297-exon-sc0000075-1575043694:219398..219545TCONS_00007297-exon-sc0000075-1575043694:219398..219545Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1575043694:217209..217424TCONS_00007297-exon-sc0000075-1575043694:217209..217424Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1575043694:215627..216162TCONS_00007297-exon-sc0000075-1575043694:215627..216162Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1510915933:219398..219545TCONS_00007297-exon-sc0000075-1510915933:219398..219545Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1510915933:217209..217424TCONS_00007297-exon-sc0000075-1510915933:217209..217424Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1510915933:215627..216162TCONS_00007297-exon-sc0000075-1510915933:215627..216162Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1491911889:219398..219545TCONS_00007297-exon-sc0000075-1491911889:219398..219545Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1491911889:217209..217424TCONS_00007297-exon-sc0000075-1491911889:217209..217424Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1491911889:215627..216162TCONS_00007297-exon-sc0000075-1491911889:215627..216162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:215627..219545 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.16636	3.48353	9.8033	11.4885	11.2807	7.38627	8.36958	11.7298	7.423	6.35126	7.78874	5.72077	8.70659	8.45594	6.5116	7.94561	9.34574	9.50695	5.67395	6.20988	9.96123	9.00379	5.28931	6.37218	8.58964	10.7742	5.90319	2.45409	2.68185	2.66322
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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