TCONS_00007297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007297
Unique NameTCONS_00007297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007297 ID=TCONS_00007297|Name=TCONS_00007297|organism=Clytia hemisphaerica|type=transcript|length=900bp
aatggttgttaaaaaattgtgagtttGACTGTCTAGTTTATGTTCTTTct
tgatttaaatttttatttcatctttttttacCACTAGAAAGAAATAAGAG
TATATTTTAATCAAATGTTCAAGCACTACATCAAAGTGCTATGGATTTAC
ACACTTAGCTTTGGGTTCGATGTTATAGCAGAGGAAACAAAATGTATTCT
TCTCAAACAAAGCTGTCTGGATAAAGAGTGTGGCAATTGTCTACAGCTTT
CAACACAGGGGAAATTTAACCAAGCAGTACGATTATGTGGAAATTCATCA
TTCACAAGTTGTCTGATAGAGAATTGCTTAAAAGACAACACTGATTGTGT
TCACGTACAACAAGACAGAGAAGTTGGTGGAATCGATAAAACAATAGTGA
TAACTTCATCGGTGGCTTGTTTTACACTTCTAGTagttgtgtttttgttt
ttctatcgATTTGTGAATCGCACTTCTTTATCAAGAACTAAAAACAAGAA
AGTCGTGAATTTGGAAAAGAAAGAGGAAATTTTTGATACCCCCATTAAAA
TGAGAGATATAGAAGAAGGTTGTGTTGAAAATGTTCCAATCAAATCGATT
TGGAGTAATGTTTATATTACAAAGCTGGAAGATTACGAAACGTCAGAAGA
TGAAAACTAGAAAGTTTTTCgtttaagtcattaaaaaacTCAAAGTGTAA
ATATTTCTGTAGATAAATTTATATATTCCCTGGAACATCACAACTACCTT
TCATGCTCTCTGAGGAAAAAATATGGGCCCCCGGCCACAGTGATACTAAT
AGTCCTTTTTTTAACggttaaggtggtagtctactgagaaatggaaaatc
atcgaaaaaattgtcgaattttggtttttgggtgttttgagatccttagg
Run BLAST on NCBI

protein sequence of TCONS_00007297-protein

>TCONS_00007297-protein ID=TCONS_00007297-protein|Name=TCONS_00007297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MFKHYIKVLWIYTLSFGFDVIAEETKCILLKQSCLDKECGNCLQLSTQGK
FNQAVRLCGNSSFTSCLIENCLKDNTDCVHVQQDREVGGIDKTIVITSSV
ACFTLLVVVFLFFYRFVNRTSLSRTKNKKVVNLEKKEEIFDTPIKMRDIE
EGCVENVPIKSIWSNVYITKLEDYETSEDEN
Run BLAST on NCBI

transcript from alignment at sc0000075:215627..219545-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007297 ID=TCONS_00007297|Name=TCONS_00007297|organism=Clytia hemisphaerica|type=transcript|length=3919bp|location=Sequence derived from alignment at sc0000075:215627..219545- (Clytia hemisphaerica)
AATGGTTGTTAAAAAATTGTGAGTTTGACTGTCTAGTTTATGTTCTTTCT TGATTTAAATTTTTATTTCATCTTTTTTTACCACTAGAAAGAAATAAGAG TATATTTTAATCAAATGTTCAAGCACTACATCAAAGTGCTATGGATTTGT AAGTACTTCATATACTATTTCTTTATTTTATACCTGAAGCTCTTTGTACA TTATATTGGTATTGAAGTTTGCGGGTTACAAAGTTTCGCGAGTACTTAAT TTCGCAAAATTTAATACCGTTTAAATTTTTCAAAATAGGCCGAAAATCGA AAATACTTATTTGTCACACTTAGTTACTATTTTTGGTATGTTTACACCCA ATAAGTTTTGTTTCAAGCGAAATTAGGATCACAATAAAAAATAGTGTGAC ATTTTGAAAAATGCCCAAAAACAACGTTGTCGTTGTCATAGCTGATGAAG TCTTCTTGACAAGTCTTGAAATTTTACAATGTTGTGGGAAATACATGTTT TTTTTTTATAAGCAAGTATCTGTCCCTATGTCAGGCTCGCATTATGCTTA GCATTCTATTGTTCTCAAACAATAGAGCCATTGTTTAGGTATCAAAAACT GAGCCTGCATATGCTTATAAACGTTATGCTTATAAAAAAACCCTTACTAA GACATTATGAATGAAATTTTCTTTTTCGTTAATTGGGCTAAAAATGTGGC TTCAACTCAAAATCTTTTTTAGAAATGTACTCTTAGGTGCCAAATAAACG GGTCCCCCCGCTTGTTAATTTTTCGATTTTTTTCCAACCCCCTCGGACGT TATTAGGACCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCGGTAATTAGGTCCCCCCC GTTTATTTGATTTGAAAATTTTTTCGAACCCCCCCGTTTATTCGAACCCC CCCGTTTTTTTGGCACCTAAGAGTAAGCCACACAAATTAGATAAGAGATA TTAGAATGGGACTTTCTTAACTTGACAGAGGAAAGGTTGAATTAAAAAAA GTTAAATGTACATACTTTCTAGCTATTAAATATACTTTTTTGTGGCTTGC TTTTCGATAATTTTTAACGTGACTTTGTAAGCCACAAAATTGTACTTACA ACAAAATTTTTGTAATTTTTTACACCTACTGGTGTTATACTTTAATGATT GAGTGCCAAAAACTTAAAAAATGTTAAACATGAGATTTCATCTATATTTC ACCTACACCTGTATTCACCTATTCGCCTACATTTCCCTTGCGTAAGCCAC ATTTTTGCCCACTTAACAAACTGTAAGCCAGAAATCAGTGCAGCTAGTGA AAAATTTAGCCCTTTGCTTGCAATGCTGAAAAGAAAGTATATTTCTGACT GTTTCCATTATTGAGAACTCAGCCAACAAAATTTCTTGGTAGTGTAAGCC ACATGACAAGTAAGCCACATTTTTGCCTGCACTTCATTTGCTTGTAACTC CCCTTAAGTAAGCCACTAAAATTCGCCCTTTATGCAATGGATAGCTAATT TCCTTAGCTTAACCATCAAAGCGATCCTAAGAGTAAGCCACATGATTTTC CCAAGTTATGGTCAAATTAGTGGCTGACAGTAAAAATGTCACAAAACAGA GGTTTATTTTTGATTGGGATCCCTAAAGTCATTTTCTTTCACATTTTGAA AATTTCCAAAAAACTTGTAATCGCGAAATTTATTACACACGAAACACGTT TACTCAAAAGAATTTCGTGATAACCCGCGAATTAATACCCATAAGGTGTT TAGTTTTGGTAGTACTTTTTGCACATGTATAAAATTTCCGCTAAATTGAC ATCAATTGTTTAAAAATTGTTAAATTAGTTTTTAAGTTACAAATTATGGA ATGTTTTCATTTTATTTATAGACACACTTAGCTTTGGGTTCGATGTTATA GCAGAGGAAACAAAATGTATTCTTCTCAAACAAAGCTGTCTGGATAAAGA GTGTGGCAATTGTCTACAGCTTTCAACACAGGGGAAATTTAACCAAGCAG TACGATTATGTGGAAATTCATCATTCACAAGTTGTCTGATAGAGAATTGC TTAAAAGACAACACTGATTGTGTTCACGTACAACAAGGTAATCAATCATA TCATTCACATCAACTAAGATTGCAATTCTACCAAAAATTTTAATTCATAT TTTAGTGAGAGCCTGAAGAATTCTGAAAGCATCCTTCGTGTGCACAGAGT TGTTAAAAGCAAACTAACTTTTTTAAATGATCAATTAGGTCCATAAGATC ACAAAAACGAGTGATGAGAAAAATTTTGACCATTAGGGCGGTCCCCATGT GACGTCATCACTTTTGTGAAGTGAAAATTAGAAGCTCATATATGGCTCAA ATGAAAGATATTTATCCAAGGATTGCAAAAAAAATCATAACATATGTACC TGAAAATCAATATTTGAGAAGCTATAAAGGAAAATAGCTTAAAAAATGAC GTCATCGACAATAAAAGAATCGTCAAATTCGAAAAATTTTTGTTTCGTTT GAAAGAGGACCATCTAGTGAACAAAAAATATTACTACAAAAAAATCTGAA TTTCTCCTTATAAGCTGTCAGGAGCAAATTTGTAATTCATTAAATTTGCC TGCGAAAGGTAAGCTTCGGGCACGCCCAGGAATCTTTAAAAAGCTTGAGA GTCAAGTCAGACGCTTTTCACAGAATAATTTCCTATCAAGTGAAATTCAA GGTTTTCCGTAGTAATAGTTTTTGTTCCCAAGCAGGTCCTCTTTTCAAAT TTTTTTGCTCACTCGCCAAAATAAGTTCCCGTCAAAATTAAATTTTTTGT TTCCTTGCCTAAATAACCCCTGAAATTCATCAAAATCGCTAGAAATAAGG CAAAATAGAACATATTTACGCTGTCATTCGCCAAAATTAGTTCCCGCCAA AATTAAAAAAATTCTCTATTCGCCAAAATAAGTTCCCGCCAAAATTAAAA TTTTTTAGGATATTTGCTGCCCGCCAAAATAAGTTCACGCCGAAAAAAGT TCCCTTAAGGTAGTTTCTCCTCTCAAAACATGTCCAAAAGATGATTTTTA ATTTATTTTGTAGAAACCATACAAATTGTAATTTTGGAAAAATCACTCTC CAGCTAAAGTAGAAACTATTCTTTTCTTATTAGACAGAGAAGTTGGTGGA ATCGATAAAACAATAGTGATAACTTCATCGGTGGCTTGTTTTACACTTCT AGTAGTTGTGTTTTTGTTTTTCTATCGATTTGTGAATCGCACTTCTTTAT CAAGAACTAAAAACAAGAAAGTCGTGAATTTGGAAAAGAAAGAGGAAATT TTTGATACCCCCATTAAAATGAGAGATATAGAAGAAGGTTGTGTTGAAAA TGTTCCAATCAAATCGATTTGGAGTAATGTTTATATTACAAAGCTGGAAG ATTACGAAACGTCAGAAGATGAAAACTAGAAAGTTTTTCGTTTAAGTCAT TAAAAAACTCAAAGTGTAAATATTTCTGTAGATAAATTTATATATTCCCT GGAACATCACAACTACCTTTCATGCTCTCTGAGGAAAAAATATGGGCCCC CGGCCACAGTGATACTAATAGTCCTTTTTTTAACGGTTAAGGTGGTAGTC TACTGAGAAATGGAAAATCATCGAAAAAATTGTCGAATTTTGGTTTTTGG GTGTTTTGAGATCCTTAGG

Coding sequence (CDS) from alignment at sc0000075:215627..219545-

>TCONS_00007297 ID=TCONS_00007297|Name=TCONS_00007297|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000075:215627..219545- (Clytia hemisphaerica)
ACAGAGAAGTTGGTGGAATCGATAAAACAATAGTGATAACTTCATCGGTG
GCTTGTTTTACACTTCTAGTAGTTGTGTTTTTGTTTTTCTATCGATTTGT
GAATCGCACTTCTTTATCAAGAACTAAAAACAAGAAAGTCGTGAATTTGG
AAAAGAAAGAGGAAATTTTTGATACCCCCATTAAAATGAGAGATATAGAA
GAAGGTTGTGTTGAAAATGTTCCAATCAAATCGATTTGGAGTAATGTTTA
TATTACAAAGCTGGAAGATTACGAAACGTCAGAAGATGAAAACTAGACAC
ACTTAGCTTTGGGTTCGATGTTATAGCAGAGGAAACAAAATGTATTCTTC
TCAAACAAAGCTGTCTGGATAAAGAGTGTGGCAATTGTCTACAGCTTTCA
ACACAGGGGAAATTTAACCAAGCAGTACGATTATGTGGAAATTCATCATT
CACAAGTTGTCTGATAGAGAATTGCTTAAAAGACAACACTGATTGTGTTC
ACGTACAACAAGATGTTCAAGCACTACATCAAAGTGCTATGGATTTACAG
AGAAGTTGGTGGAATCGATAAAACAATAGTGATAACTTCATCGGTGGCTT
GTTTTACACTTCTAGTAGTTGTGTTTTTGTTTTTCTATCGATTTGTGAAT
CGCACTTCTTTATCAAGAACTAAAAACAAGAAAGTCGTGAATTTGGAAAA
GAAAGAGGAAATTTTTGATACCCCCATTAAAATGAGAGATATAGAAGAAG
GTTGTGTTGAAAATGTTCCAATCAAATCGATTTGGAGTAATGTTTATATT
ACAAAGCTGGAAGATTACGAAACGTCAGAAGATGAAAACTAGACACACTT
AGCTTTGGGTTCGATGTTATAGCAGAGGAAACAAAATGTATTCTTCTCAA
ACAAAGCTGTCTGGATAAAGAGTGTGGCAATTGTCTACAGCTTTCAACAC
AGGGGAAATTTAACCAAGCAGTACGATTATGTGGAAATTCATCATTCACA
AGTTGTCTGATAGAGAATTGCTTAAAAGACAACACTGATTGTGTTCACGT
ACAACAAGATGTTCAAGCACTACATCAAAGTGCTATGGATTTACAGAGAA
GTTGGTGGAATCGATAAAACAATAGTGATAACTTCATCGGTGGCTTGTTT
TACACTTCTAGTAGTTGTGTTTTTGTTTTTCTATCGATTTGTGAATCGCA
CTTCTTTATCAAGAACTAAAAACAAGAAAGTCGTGAATTTGGAAAAGAAA
GAGGAAATTTTTGATACCCCCATTAAAATGAGAGATATAGAAGAAGGTTG
TGTTGAAAATGTTCCAATCAAATCGATTTGGAGTAATGTTTATATTACAA
AGCTGGAAGATTACGAAACGTCAGAAGATGAAAACTAGACACACTTAGCT
TTGGGTTCGATGTTATAGCAGAGGAAACAAAATGTATTCTTCTCAAACAA
AGCTGTCTGGATAAAGAGTGTGGCAATTGTCTACAGCTTTCAACACAGGG
GAAATTTAACCAAGCAGTACGATTATGTGGAAATTCATCATTCACAAGTT
GTCTGATAGAGAATTGCTTAAAAGACAACACTGATTGTGTTCACGTACAA
CAAGATGTTCAAGCACTACATCAAAGTGCTATGGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004095XLOC_004095Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007297-proteinTCONS_00007297-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007297-exon-sc0000075-1575043694:219398..219545TCONS_00007297-exon-sc0000075-1575043694:219398..219545Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1575043694:217209..217424TCONS_00007297-exon-sc0000075-1575043694:217209..217424Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1575043694:215627..216162TCONS_00007297-exon-sc0000075-1575043694:215627..216162Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1510915933:219398..219545TCONS_00007297-exon-sc0000075-1510915933:219398..219545Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1510915933:217209..217424TCONS_00007297-exon-sc0000075-1510915933:217209..217424Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1510915933:215627..216162TCONS_00007297-exon-sc0000075-1510915933:215627..216162Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1491911889:219398..219545TCONS_00007297-exon-sc0000075-1491911889:219398..219545Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1491911889:217209..217424TCONS_00007297-exon-sc0000075-1491911889:217209..217424Clytia hemisphaericaexon
TCONS_00007297-exon-sc0000075-1491911889:215627..216162TCONS_00007297-exon-sc0000075-1491911889:215627..216162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:215627..219545 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.16636 3.48353 9.8033 11.4885 11.2807 7.38627 8.36958 11.7298 7.423 6.35126 7.78874 5.72077 8.70659 8.45594 6.5116 7.94561 9.34574 9.50695 5.67395 6.20988 9.96123 9.00379 5.28931 6.37218 8.58964 10.7742 5.90319 2.45409 2.68185 2.66322
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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