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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007296 ID=TCONS_00007296|Name=TCONS_00007296|organism=Clytia hemisphaerica|type=transcript|length=476bp
AGTCAACAACAGGAAggtcagaaaatcaaaaaatcgcAGCAAAAAATATC
GTGTTCTGGAAGCAACAAAGCACAACAATTACAAGATAGCCAAAACGTCA
AAACTCACGTTAAAGCATGGGTTGGTGTTGCAACGCCATCACCATATTTT
CGACTCAAGTGTTGCAACCAACCAACCAAACCAACGCGGCTTTGACCACT
GGTTTCTAGACCCGACTTGCCAAGACTGATAAAGCTCGATGCTTGCCCAG
CTGGAGTGTGACGcgtgcaaaaaatgaaaatgtttcggCAGACAaatagt
ttttatattttataaagtCGAGCCGTCGTTATACGAACTTAACTTTTGAG
GGGTCTGGTTTGTCTGGTTATGGTTTGACTGTTTGTTCTTTACTTTATAT
TATTTCACTtacattttttattctttcatctataaaaaatagaaaagata
tCATATATTAGACAGTTAGATGAAAG Run BLAST on NCBI transcript from alignment at sc0000075:205968..209193- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007296 ID=TCONS_00007296|Name=TCONS_00007296|organism=Clytia hemisphaerica|type=transcript|length=3226bp|location=Sequence derived from alignment at sc0000075:205968..209193- (Clytia hemisphaerica)
AGTCAACAACAGGAAGGTCAGAAAATCAAAAAATCGCAGCAAAAAATATC
GTGTTCTGGAAGCAACAAAGCACAACAATTACAAGATAGGTAAGGTTGGT
TATTTCTGGTTTGTATTAAATTTACAAGAATGGTTTGAGAGAAATTTAGT
TTGATACTTTAATAATTTTTGTGACTTAAACATAAGAAGTCATTTAACAT
AGAGGGGGTGCCCAGTGCACAAACAGCAAACTTATTTTTCACTTTTCTCA
CTACTTTTGGTTTTTACATAAATCCTTTTTGACCATCTCGTAAAGAAGCT
TGAAGTCTTCAGTTTGTTTTCACTTTATTTGAAAGCTTCTTCTTGGAATA
ATAAGTCGTTAAGACGAGCACTCACAAGTGTTACGCGTAAGCCAAATTGC
GTATTTTAGGAACAACCTCTAAATTGCCGAGTAGAGTACCCTGCCCAGGT
TGGCGACCGAAATTTTTGGATTCGAATTTTTCACTTACTTTTTGATTTTT
TATTTGAGATGATCTTCTTAGAATAAAAAACTTTCGAAGCGAGCGGTACT
AGTGCCCAGTTCCCGACCGACGTACCAGTCTGCGACCGATCGTTAAAAAG
AGAAAATCAGTGCTCTACTTACAGGTAAGGTCATATTAATTGATCAAGAT
GATAAAAAAACTCATAAGCTTTCCCGTATTAAATTTATTTACACTCGTTC
TTTTGTTTAAAAATAGCTCACTTACATTTCCCTTCGGCATGTTTCTTCAG
AATTTTTCTTCAAGTCGCCATTTTTTTCTAAAGTTTGTTATTGTTTTGTT
TTGAAAGTGGCGGTCTATGGAGAGTCTTCATTTGATAAAAACGCGGGAAT
TTTTTATGCCTGTTTTTTTCTCTTCGCGTCTGGAATTTTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTGGTCGGTCGCAGACTGGACGTCAAATTTCG
AAGCTGATTGCATCAACTTTTTTATCAATATTTCACACGAAGGAAACTGT
ATCGAGCTGATTTTTACAGAAATTCTAACATACTTATTGTTTTGGACAAG
TATTTTTTGGCGTGGGAGTTGAAGCGTTTTTTCTTACGAAGCTTTTTTGT
CCACAGGTAGCCATTTTTTATTTTTTTTTTGAAAAATCCGGCTTTTTCGT
GTGCGTCCGTGCAAAGTTGGATCTTTCGGATTCTACTCGTTTTTTTCTAA
AACCTTTTTTACACAGTGCGGGAAATAGTTCAAGGCAGATAACTACCAAA
AGAAATTCTCCAGAGGTTTGTTTTTGTATGACTTTTCTGGGTTCAAAGAC
GTTCGGTTGCCAACTAGACCGGTCGCCAACTGGGCAGGGGACTCTACAGG
AGAAAAAAATCGAAATTCAAAATGGCGGCCAAGGCAAGCCCACGCTGATA
ACTATCAAAAATCTTCGTTTTTCAATCAGCTATTGCAGCTCAATAAATCA
ATGAAATAATTTGAAATAAAAAGTAAACAACCTTCTTGAACCTTTCATGA
ATCCAAATAAATAAAAGTATTCATCTAAGGGGCCGTCGACACTCGACTTT
CGAATTTTTTAACGGCATTTGGCCGTTATGGTTCTGACCCCCTCCCCCCT
CTACGTTAACGGCCATCAAATTCTCTAAAGTTAAAAAATTGTCAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGGCTTCGCTCAGTTTACATTTTAAAAATAACGGAGATA
ATTTCTAAACTTTTTTCCGAAAGTTGCGCGAATTAATTATCTCCGTAATC
ATAATCAAAAGAAGAGCGGCATTTGAAAGAAAAAAGACCGACTGTCTGCA
AAATTCAAGGGCCGCGCGGACTGTCTAAACAAATGGAACACGAGACATAA
AAATCGGGTCGTTTGTTTTGGTTAAAATTATTCTAAAAAATAGCGAAGTG
AATACTTTAGGTATGTGACTTTAGCAGATCTTAGTTGATAAAAGGAGGAA
AAGAAATATGCAAAGTAACATTTCTATGGAATAAACGTCTCAAAAATCAA
TATTTTTTGGTGAAAAGAATTGTATGTGGTGAGTTGACACCTAAAGAGAT
TTTCGACCTTCCCTTAACGGCACATGCTCGACCGCCCCTCCCCCCCTTAA
CGGCCAAATGCCGTTAAAAAATTTGAAAGTCGAATGTTGATGGCCCCTAA
AGTGAAGATTACATTTCAAAATAAAACAATTTCCAAACCAACCTAAAGTC
AGTGTCTGCCAACTAAAAATTTATCTGCGGGGTCACTGGCAAGGAGTTAC
GACTTCAGACTTTAGATTCCAATTCTTGTATAGGCTGCAACTACAGTTGC
CAAATGATCTGTATTACAAATACTTCCAAATGGGTCCATTAGTTGAGAAA
ATAAAATTATCATCTAACACGGGGTATTTGTTTTAAAAAACAAACATAAA
ATTGTTAATGAACTTAGGGGTCACTCACAAATCGATTTTAAGTTCAAATA
ACGTCACATGACGTTTTGATAGCTAGAACACCCACCCACCCCACATAACG
TCACTCAAAAAATCTGGTACTTTGATTCTTTTTCTTCAGCCAAAACGTCA
AAACTCACGTTAAAGCATGGGTTGGTGTTGCAACGCCATCACCATATTTT
CGACTCAAGTGTTGCAACCAACCAACCAAACCAACGCGGCTTTGACCACT
GGTTTCTAGACCCGACTTGCCAAGACTGATAAAGCTCGATGCTTGCCCAG
CTGGAGTGTGACGCGTGCAAAAAATGAAAATGTTTCGGCAGACAAATAGT
TTTTATATTTTATAAAGTCGAGCCGTCGTTATACGAACTTAACTTTTGAG
GGGTCTGGTTTGTCTGGTTATGGTTTGACTGTTTGTTCTTTACTTTATAT
TATTTCACTTACATTTTTTATTCTTTCATCTATAAAAAATAGAAAAGATA
TCATATATTAGACAGTTAGATGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007296-exon-sc0000075-1575043694:209105..209193 | TCONS_00007296-exon-sc0000075-1575043694:209105..209193 | Clytia hemisphaerica | exon |
| TCONS_00007296-exon-sc0000075-1575043694:205968..206354 | TCONS_00007296-exon-sc0000075-1575043694:205968..206354 | Clytia hemisphaerica | exon |
| TCONS_00007296-exon-sc0000075-1510915933:209105..209193 | TCONS_00007296-exon-sc0000075-1510915933:209105..209193 | Clytia hemisphaerica | exon |
| TCONS_00007296-exon-sc0000075-1510915933:205968..206354 | TCONS_00007296-exon-sc0000075-1510915933:205968..206354 | Clytia hemisphaerica | exon |
| TCONS_00007296-exon-sc0000075-1491911889:209105..209193 | TCONS_00007296-exon-sc0000075-1491911889:209105..209193 | Clytia hemisphaerica | exon |
| TCONS_00007296-exon-sc0000075-1491911889:205968..206354 | TCONS_00007296-exon-sc0000075-1491911889:205968..206354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:205968..209193 - |
Blast
The following BLAST results are available for this feature:
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