TCONS_00007294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007294
Unique NameTCONS_00007294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007294 ID=TCONS_00007294|Name=TCONS_00007294|organism=Clytia hemisphaerica|type=transcript|length=1969bp
AAAGTTTTTTGCATACTTAGCACACTTACACTGTTAAAAATGCATCTAAT
TTCCTTTAGAAAATAATTgatataaacataaaaaaagatCGTGGCATATT
GAGATGTATCAAAGACCATATAGTGCGCCACATTCACTCTCAAACAAAGA
TGAACAAGCAAGCATAAATCCAGTGACTCTTGGCAAATACGAAGAGTTAT
GTGGTTGGAATACGTCACCTGACAATAAACGAGAACAACATCAACAATCT
ACGATAAACAAACGCAATCTAACTAAGAAAACATCGTCAAGAAGTTCTTC
AAAAACTGCTGCCTCCTTATTTTCAAATACCAAACCAAAGTACAGATCTA
CCAAATGGTTACAACAACATGGCGTCTCACAAATCGAATTCGAATTCTCT
TTCCAACATCATACAGATACATCGGAATACATCTCAACATACCGACGATC
AAAAATGGCTAAAATTCACGATCTTTACTCAGATGAGATTCGAGAACTTT
TAAATCAAAGGCAAGCTGCTGTTTGCATTAGTGAACCGGTTACTGTCAAT
AATACTAGAACAATACCGGGTAGTCATGTATACATAAAAACACCGGTCGA
ACCGGATGAGTATCCAATCAGATATCGGATAGAAGATAAACGGGGTCATG
CATCCGATAGTTCAAGGAAAAAAGAATGGTCAAGTCAAAAAATCAAAGGC
ACAAAGTTGGTCAATAAAATCGACGAACAACGAAAGGAAAGGGACTACAT
GTTTAATAACAGTTTCATCACCAAAAACCTTCCAAAATGCGACGCAATTA
TGATTCCACATCGGCCGCCAGTAGCATCGACCAATCAGAATCCAAGATTA
CATCACCATAGTAACGCAAACAATGCAATAGATAACGATCGTTTCGTGAA
TCAGGTCCAAAACCACGCATTACAATGTCGTAAACTGAGTGAGCTTTCTA
TATCAAAAGCAACTAGACattataaacatcaaaaatATATGGACCCAGGT
TGGATGCCGCACGATGCTATGCCGCCAAGAGAGGGTATCAAATTACGCTC
GGCGGAGGAAAGGCGTAGACGGACTAGTGCCCAGTCTTTAAAGAAAACAA
CACCGACCTATAATCACATAATTAAGCGTGTTTTAGAACATTATGACCCT
TCAAAGAATCCAGTACGTGCCCGTATTGCTAATGAACTAACTGTCAAAGG
TTTGGTGGCTACCATTTGAACGATTCAACTCCGAATTTTGGTTTTGAGAT
TGTTGATTTGCATGGTAAATTACTGTTACCTAGTATATTATTTCGCTGCC
ATTGGAGCAGGAGGCCCAATCTCATCAGAATTAGTGTCTGAGAAAAcaga
ttttatttgctttgctaacttaaattttaagATTGGCTCTTTTTTGTATT
GAGAaggatctattaaaattagcaAGCCAAAATCTCAGTTTTCTCAGACA
TTAATTTTGGGATTGGACGTATTGCTTCAATGGCAGTGATTTGAACTTTT
CATGAAATTTACAACAAGCTGTATGTGTGCTTCCTTTCAAATCATGGGAT
AAATCTGGTATAATTGGTCGTTTTGTTAAGTAGCTTTACTAGGCAGACCA
CTTAGAAAGAGAGTAATTAGTATGGCAAtatgttatttttttagaaagat
tGTAGCTTTTCTATAGTTTACTTTCTAATTGTGAAAATTTGTATAAAGTT
CCATTTTGTAAATATTCAAATCGATATAAAAtgtattatttttcttatgT
AATTATTATAATAACATGATTGTCATTTTTATTGTATTATCCAGTTTACA
TACAACGGCTTACGATTTGCTCGTAATTTTTACAATATGCTGCAATATGC
AGtaattaaaatctttaaaaggattaaattaaaaatttattagGATAGTT
TTGCGTTTCATAACATAACTTTCATGATTTCATAAATTTATCTCTTTGTC
CGAAATAGATGTAACCGAC
Run BLAST on NCBI

transcript from alignment at sc0000075:199629..203050-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007294 ID=TCONS_00007294|Name=TCONS_00007294|organism=Clytia hemisphaerica|type=transcript|length=3422bp|location=Sequence derived from alignment at sc0000075:199629..203050- (Clytia hemisphaerica)
AAAGTTTTTTGCATACTTAGCACACTTACACTGTTAAAAATGCATCTAAT
TTCCTTTAGAAAATAATTGATATAAACATAAAAAAAGATCGTGGCATATT
GAGATGTATCAAAGACCATATAGTGCGCCACATTCACTCTCAAACAAAGA
TGAACAAGCAAGCATAAATCCAGTGACGTAAGTCATACTGCTTCATATGT
GAAGTTTTCTTTGTGTGTTTTTATGGACATAAAAGTAGTAAAATGTAAAC
ATTGCACGAACCATCTTTCATTAAAGAGAACAATTAAAATCACGTGTCCA
AAACAAACTTGTAAAACAATTGAAACAATCAAAATCACACATATTTGTTT
TGTTTTTTTTATTTTGACATGTGACATTTGTTTTGATTTTGTATCCCGCT
GCATACAAATTTCATCAGTACTTTTATGTCCCTTTAATGAGTTTAAGTTC
ATTATTTAACACAGACGAGTATAATTCTATGGTCATCCTAACTTTACATG
AATAATTAAATTTGGCTGTTCCAGAAAAAACGTCAAACCCCCTGTTTTTT
GCAGAAATTCTAGATACTCCACCCTCAGATTAGTTAGGTTTTTCAAGGGC
ACCCTATTCCCGAGAAATATGACTCCTCAACATGGGTAAAATATTTCTGA
AATATATTATTTAATCACATGACCCTAAGTCGAGATTAGAGATGGATTGG
TAGCTGTTGATTTCACGAATCCTTCATAAATGATAAGCTTCAATATCGAA
AACAATATTTTTCAAGTTCATAACAAGTCTTCATTTTAATTTTCACGTTG
AATTTTTTTATTGTTTCAATTTTGTTTGAAATTATAAAAAAAGGTTGAAA
TATCTGTGAACATTTCTTATTCTAACAAGCTTCTGATAAGTTTGTCTCAT
CAATCAATGTTTTAAGGAAAATGGTTTTAAAAAAGTTGAATTTGAATCAT
TTAAGGTCTGTAACTTTATCATGTTAGGGGTTAAGGGTATCAGCTGGTAG
TTTAACAGCTCTTATATGCCAGCTCTTTTTCCATCAGCAGTTCATTGACT
ACTAACCGCTTGAAATTAAAGGAAAAAAGTTGTCGAATTTTTGCAGTTCA
GGAAAAGAGCTTTCCAACGATATCATGATCTATATGTTAAACTCGCTCCC
CTGAAAGCTAATCCAAAGATTAGTTACGCCAAAAAAGTTTTTTAAACCCC
GACTGCTTGTTGTTTTAAAGTAAAAGTACTTTTTATTCATTTTCTAGTCT
TGGCAAATACGAAGAGTTATGTGGTTGGAATACGTCACCTGACAATAAAC
GAGAACAACATCAACAATCTACGATAAACAAACGCAATCTAACTAAGAAA
ACATCGTCAAGAAGTTCTTCAAAAACTGNGAGAACAACATCAACAATCTA
CAATAAACAAACGCAATATAACTAAGAAAACATCGTCAAGAAGTTCTTCA
AAAACTGCTGCCTCCTTATTTTCAAATACCAAACCAAAGTACAGATCTAC
CAAATGGTTACAACAACATGGCGTCTCACAAATCGAATTCGAATTCTCTT
TCCAACATCATACAGATACATCGGAATACATCTCAACATACCGACGATCA
AAAATGGCTAAAATTCACGATCTTTACTCAGATGAGATTCGAGAACTTTT
AAATCAAAGGCAAGCTGCTGTTTGCATTAGTGAACCGGTTACTGTCAATA
ATACTAGAACAATACCGGGTAGTCATGTATACATAAAAACACCGGTCGAA
CCGGATGAGTATCCAATCAGATATCGGATAGAAGATAAACGGGGTCATGC
ATCCGATAGTTCAAGGTATTGTTTTAAATTTTTTTGATCAAATCATTTTG
ACTTTCATTTACAGAGGGTTTTATATTGAAGACCTTTTGTTTGCCGTTTG
TTGAAGACCGCGCATGTTTTATGAAGCAAACATATTTTTCCATTTTGTAG
GAAAAAAGAATGGTCAAGTCAAAAAATCAAAGGCACAAAGTTGGTCAATA
AAATCGACGAACAACGAAAGGTATGTAGTTTTAATTTTTCCCTATATGTT
TATTTTTTTACCATACGTCATGTTAAAGAAGTTTCCTCTAGCCTAAAAAT
TAGTTTTTACATAAAGCTTCAGTCAAAATGTTCCTATAAATTTCCTCACA
AATCTTTTCAATTGAAACATTTTCATTAATTCCATATAGGAAAGGGACTA
CATGTTTAATAACAGTTTCATCACCAAAAACCTTCCAAAATGCGACGCAA
TTATGATTCCACATCGGCCGCCAGTAGCATCGACCAATCAGAATCCAAGA
TTACATCACCATAGTAACGCAAACAATGCAATAGATAACGATCGTTTCGT
GAATCAGGTCCAAAACCACGCATTACAATGTCGTAAACTGAGTGAGCTTT
CTATATCAAAAGCAACTAGACATTATAAACATCAAAAATATATGGACCCA
GGTTGGATGCCGCACGATGCTATGCCGCCAAGAGAGGGTATCAAATTACG
CTCGGCGGAGGAAAGGCGTAGACGGACTAGTGCCCAGTCTTTAAAGAAAA
CAACACCGACCTATAATCACATAATTAAGCGTGTTTTAGAACATTATGAC
CCTTCAAAGAATCCAGTACGTGCCCGTATTGCTAATGAACTAACTGTCAA
AGGTTTGGTGGCTACCATTTGAACGATTCAACTCCGAATTTTGGTTTTGA
GATTGTTGATTTGCATGGTAAATTACTGTTACCTAGTATATTATTTCGCT
GCCATTGGAGCAGGAGGCCCAATCTCATCAGAATTAGTGTCTGAGAAAAC
AGATTTTATTTGCTTTGCTAACTTAAATTTTAAGATTGGCTCTTTTTTGT
ATTGAGAAGGATCTATTAAAATTAGCAAGCCAAAATCTCAGTTTTCTCAG
ACATTAATTTTGGGATTGGACGTATTGCTTCAATGGCAGTGATTTGAACT
TTTCATGAAATTTACAACAAGCTGTATGTGTGCTTCCTTTCAAATCATGG
GATAAATCTGGTATAATTGGTCGTTTTGTTAAGTAGCTTTACTAGGCAGA
CCACTTAGAAAGAGAGTAATTAGTATGGCAATATGTTATTTTTTTAGAAA
GATTGTAGCTTTTCTATAGTTTACTTTCTAATTGTGAAAATTTGTATAAA
GTTCCATTTTGTAAATATTCAAATCGATATAAAATGTATTATTTTTCTTA
TGTAATTATTATAATAACATGATTGTCATTTTTATTGTATTATCCAGTTT
ACATACAACGGCTTACGATTTGCTCGTAATTTTTACAATATGCTGCAATA
TGCAGTAATTAAAATCTTTAAAAGGATTAAATTAAAAATTTATTAGGATA
GTTTTGCGTTTCATAACATAACTTTCATGATTTCATAAATTTATCTCTTT
GTCCGAAATAGATGTAACCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004094XLOC_004094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007294-exon-sc0000075-1575043694:202874..203050TCONS_00007294-exon-sc0000075-1575043694:202874..203050Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1575043694:201699..201803TCONS_00007294-exon-sc0000075-1575043694:201699..201803Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1575043694:201236..201619TCONS_00007294-exon-sc0000075-1575043694:201236..201619Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1575043694:201031..201100TCONS_00007294-exon-sc0000075-1575043694:201031..201100Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1575043694:199629..200861TCONS_00007294-exon-sc0000075-1575043694:199629..200861Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1510915933:202874..203050TCONS_00007294-exon-sc0000075-1510915933:202874..203050Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1510915933:201699..201803TCONS_00007294-exon-sc0000075-1510915933:201699..201803Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1510915933:201236..201619TCONS_00007294-exon-sc0000075-1510915933:201236..201619Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1510915933:201031..201100TCONS_00007294-exon-sc0000075-1510915933:201031..201100Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1510915933:199629..200861TCONS_00007294-exon-sc0000075-1510915933:199629..200861Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1491911889:202874..203050TCONS_00007294-exon-sc0000075-1491911889:202874..203050Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1491911889:201699..201803TCONS_00007294-exon-sc0000075-1491911889:201699..201803Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1491911889:201236..201619TCONS_00007294-exon-sc0000075-1491911889:201236..201619Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1491911889:201031..201100TCONS_00007294-exon-sc0000075-1491911889:201031..201100Clytia hemisphaericaexon
TCONS_00007294-exon-sc0000075-1491911889:199629..200861TCONS_00007294-exon-sc0000075-1491911889:199629..200861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:199629..203050 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.2843	12.4051	8.25027	8.34681	15.6472	14.4098	7.00763	6.82102	4.48616	6.4302	7.27005	3.0815	1.21139	2.251	2.15383	2.88389	2.68904	3.14054	2.99995	2.60069	2.56624	2.1957	9.12713	8.93009	2.55516	4.49501	2.60617	3.13412	5.37943	5.62792
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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