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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007290 ID=TCONS_00007290|Name=TCONS_00007290|organism=Clytia hemisphaerica|type=transcript|length=2456bpRun BLAST on NCBI protein sequence of TCONS_00007290-protein >TCONS_00007290-protein ID=TCONS_00007290-protein|Name=TCONS_00007290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp MRRGGLLNLKGDPLTPGWPSTEGMFRMNESSIEGLPQIPVQPISDHIAKERun BLAST on NCBI transcript from alignment at sc0000075:181950..193712- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007290 ID=TCONS_00007290|Name=TCONS_00007290|organism=Clytia hemisphaerica|type=transcript|length=11763bp|location=Sequence derived from alignment at sc0000075:181950..193712- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:181950..193712- >TCONS_00007290 ID=TCONS_00007290|Name=TCONS_00007290|organism=Clytia hemisphaerica|type=CDS|length=19422bp|location=Sequence derived from alignment at sc0000075:181950..193712- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007290 vs. Swiss-Prot (Human)
Match: FOLH1 (Glutamate carboxypeptidase 2 OS=Homo sapiens GN=FOLH1 PE=1 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 3.163e-101 Identity = 196/549 (35.70%), Postives = 295/549 (53.73%), Query Frame = 1
Query: 241 VRLAELYGAVGVLFYTDPRDGGRNPGTKGYPDDWALPEHAMRRGGLLNL--KGDPLTPGWPSTEGMFRMNESSIEGLPQIPVQPISDHIAKELLSKFTGVEAPNH-WHTSFT-------DITNRIQSHRVVRLQVNTENVFKNITNVFGVLEGDTEPDRLVIMGNHRDAWVYGAGDPSSGTACMMEVSRVLGQITNDVPGWAPRRTLIFASWDAEEYGLAGSWEWLEEYATMMQANTVVYLNVDIGVSGNHSIRAHATPSLSKSLFESAKQLKDPENDDKTTYTGVKFSNLYERWNAKLPSDDFPNEPLVSMLTSGSDYSGFYMFYGIPAVDIRYEFDRTASENEAFDNYPAYHTIYDNENYVKKFLDPDMKYHETVAEMXXXXXXXXXXXXXXXXXXXRYALKIKTDWD---IFKREFVEILTNNTISIDHLDSTIEQLLNTTLMFHHEAKKLSKQDLNQVRRYNDQLMWFERSFVVPEGLKKDPAMRHSIFNSGSRSLFSRNTFPSLSRTLYNI--FIEKTDTWDDLRKEISILDNRLQNAILVLSE 1842
V+ A+L GA GV+ Y+DP D PG K YPD W LP ++RG +LNL GDPLTPG+P+ E +R + GLP IPV PI + A++LL K G P+ W S T + +V ++ +++ N I NV G L G EPDR VI+G HRD+WV+G DP SG A + E+ R G + + GW PRRT++FASWDAEE+GL GS EW EE + ++Q V Y+N D + GN+++R TP + + K+LK P+ G + +LYE W K PS +F P +S L SG+D+ F+ GI + RY + E F YP YH++Y+ V+KF DP KYH TVA++ + + ++ ++LPFD YA+ ++ D + + + ++S D L S ++ F + K + +R NDQLM+ ER+F+ P GL P RH I+ S + ++ +FP + L++I ++ + W +++++I + +Q A LSE
Sbjct: 214 VKNAQLAGAKGVILYSDPADY-FAPGVKSYPDGWNLPGGGVQRGNILNLNGAGDPLTPGYPANEYAYRRGIAEAVGLPSIPVHPIGYYDAQKLLEKMGGSAPPDSSWRGSLKVPYNVGPGFTGNFSTQKV-KMHIHSTNEVTRIYNVIGTLRGAVEPDRYVILGGHRDSWVFGGIDPQSGAAVVHEIVRSFGTLKKE--GWRPRRTILFASWDAEEFGLLGSTEWAEENSRLLQERGVAYINADSSIEGNYTLRVDCTPLMYSLVHNLTKELKSPDE-------GFEGKSLYESWTKKSPSPEFSGMPRISKLGSGNDFEVFFQRLGIASGRARYTKNW---ETNKFSGYPLYHSVYETYELVEKFYDPMFKYHLTVAQVRGGMVFELANSIVLPFDCRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDKSNPIVLRMMNDQLMFLERAFIDPLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYVAAFTVQAAAETLSE 748 The following BLAST results are available for this feature:
BLAST of TCONS_00007290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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