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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007289 ID=TCONS_00007289|Name=TCONS_00007289|organism=Clytia hemisphaerica|type=transcript|length=2266bpRun BLAST on NCBI protein sequence of TCONS_00007289-protein >TCONS_00007289-protein ID=TCONS_00007289-protein|Name=TCONS_00007289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp MPEPMEEVEASWGDRMDEEGDGPLPPPSEEINGNVKKMIEYRYNDEGKQVRun BLAST on NCBI transcript from alignment at sc0000075:93594..107089- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007289 ID=TCONS_00007289|Name=TCONS_00007289|organism=Clytia hemisphaerica|type=transcript|length=13496bp|location=Sequence derived from alignment at sc0000075:93594..107089- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:93594..107089- >TCONS_00007289 ID=TCONS_00007289|Name=TCONS_00007289|organism=Clytia hemisphaerica|type=CDS|length=8970bp|location=Sequence derived from alignment at sc0000075:93594..107089- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007289 vs. Swiss-Prot (Human)
Match: EIF3G (Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2) HSP 1 Score: 291.197 bits (744), Expect = 6.166e-91 Identity = 150/271 (55.35%), Postives = 201/271 (74.17%), Query Frame = 2
Query: 1286 EEINGNVKKMIEYRYNDEGKQVKVTRVFNIETRKVSKAVAKRKCWKKFGSATKDNPNGPDSSTTYVGDDVFLSFTTNKEELE-EDKDDPMKKLKGTSIVKCRVCKGDHWTTKCPYKESLQPLXXXXXXXXXXXSGGVDTSTMAAEIAAKTGVNPTSAGGKYVPPSLXXXXXXXXXXXXTMNSRRQTDEAATLRVTNLSEDAMESDIQDLFRPFGPIARVYLAKDKITNQSKGFAFVSYVKREDAARAVHSLNGFGYDHLILSVEWAKPSTN 2095
E INGN+K + EY+ +++GK+ K+ R F IETRK SKAVA+RK WKKFG++ D P GP+ +TT V DDV ++F T+KE+L ++++DPM KLKG IV CR+CKGDHWTT+CPYK++L P+++ ++ +G + + E+ + GKYVPPSL DG RRGE+M R+ D+ AT+RVTNLSED E+D+Q+LFRPFG I+R+YLAKDK T QSKGFAF+S+ +REDAARA+ ++GFGYDHLIL+VEWAKPSTN
Sbjct: 58 EVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPP-GPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQKELAEQLGLSTG--EKEKLPGELEPVQATQ--NKTGKYVPPSL---RDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320 The following BLAST results are available for this feature:
BLAST of TCONS_00007289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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