TCONS_00007289-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007289-protein
Unique NameTCONS_00007289-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007289-protein ID=TCONS_00007289-protein|Name=TCONS_00007289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MPEPMEEVEASWGDRMDEEGDGPLPPPSEEINGNVKKMIEYRYNDEGKQV
KVTRVFNIETRKVSKAVAKRKCWKKFGSATKDNPNGPDSSTTYVGDDVFL
SFTTNKEELEEDKDDPMKKLKGTSIVKCRVCKGDHWTTKCPYKESLQPLK
EIEEKEKIAESGGVDTSTMAAEIAAKTGVNPTSAGGKYVPPSLRGGGDGK
ERRGETMNSRRQTDEAATLRVTNLSEDAMESDIQDLFRPFGPIARVYLAK
DKITNQSKGFAFVSYVKREDAARAVHSLNGFGYDHLILSVEWAKPSTN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004091XLOC_004091Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007289TCONS_00007289Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR024675eIF3g_N
IPR017334eIF3_g
IPR034240eIF3G_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 218..291
e-value: 1.6E-20
score: 84.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 219..283
e-value: 4.0E-18
score: 64.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 217..295
score: 17.251
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 199..296
IPR024675Eukaryotic translation initiation factor 3 subunit G, N-terminalPFAMPF12353eIF3gcoord: 32..145
e-value: 4.2E-38
score: 130.4
IPR024675Eukaryotic translation initiation factor 3 subunit G, N-terminalCDDcd12933eIF3Gcoord: 33..144
e-value: 2.47893E-53
score: 170.928
NoneNo IPR availablePIRSFPIRSF037949Transl_init_eIF-3_RNA-bindcoord: 1..298
e-value: 1.6E-96
score: 321.0
NoneNo IPR availableGENE3D3.30.70.330coord: 59..298
e-value: 4.3E-26
score: 91.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 182..208
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
IPR017334Eukaryotic translation initiation factor 3 subunit GHAMAPMF_03006eIF3gcoord: 9..297
score: 31.382
IPR034240eIF3G, RNA recognition motifCDDcd12408RRM_eIF3G_likecoord: 218..294
e-value: 2.13204E-45
score: 149.227

Blast
[Close]
BLAST of TCONS_00007289-protein vs. Swiss-Prot (Human)
Match: EIF3G (Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 5.157e-106
Identity = 155/272 (56.99%), Postives = 203/272 (74.63%), Query Frame = 0 
Query:   29 EEINGNVKKMIEYRYNDEGKQVKVTRVFNIETRKVSKAVAKRKCWKKFGSATKDNPNGPDSSTTYVGDDVFLSFTTNKEELE-EDKDDPMKKLKGTSIVKCRVCKGDHWTTKCPYKESLQPLKEIEEKEKIAESGGVDTSTMAAEIAAKTGVNPT-SAGGKYVPPSLRGGGDGKERRGETMNSRRQTDEAATLRVTNLSEDAMESDIQDLFRPFGPIARVYLAKDKITNQSKGFAFVSYVKREDAARAVHSLNGFGYDHLILSVEWAKPSTN 298
            E INGN+K + EY+ +++GK+ K+ R F IETRK SKAVA+RK WKKFG++  D P GP+ +TT V DDV ++F T+KE+L  ++++DPM KLKG  IV CR+CKGDHWTT+CPYK++L P+++     ++AE  G+ T            V  T +  GKYVPPSLR   DG  RRGE+M   R+ D+ AT+RVTNLSED  E+D+Q+LFRPFG I+R+YLAKDK T QSKGFAF+S+ +REDAARA+  ++GFGYDHLIL+VEWAKPSTN
Sbjct:   58 EVINGNIKTVTEYKIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPP-GPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLKGQKIVSCRICKGDHWTTRCPYKDTLGPMQK-----ELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLR---DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
The following BLAST results are available for this feature:
BLAST of TCONS_00007289-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF3G5.157e-10656.99Eukaryotic translation initiation factor 3 subunit... [more]
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