TCONS_00007267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007267
Unique NameTCONS_00007267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007267 ID=TCONS_00007267|Name=TCONS_00007267|organism=Clytia hemisphaerica|type=transcript|length=380bp
TACTAATTTATTAAAGATCATTGGAGGTAGGTTCGAGTCTGTtattttat
ttacttatttactCAACAAGGAATCAATTGCAAATCATCAAGTAATAATT
TCCATCCCGCAGCTATGTACAGGGTTCTCTTTAGCTAGCATTTAAATTGC
AATCAATCCTGATTTACATAATTACTTTAAAGGATACCCACGTAGGTCCT
TGTGTTAATAATTTGAACAAAACAACTATATCCATTAAGTATCGTTTCAG
AGATTGATCACCGACTAACAACTGAATTTAATTGATCACGAATTTTGCCT
AAACCGTCTAACATAGTGTCTAAGGTTTCTTTAGAAAGTTCGACAGTAAT
ATTTGATGGTTTTTCTTCCTCGGCTGTGCC
Run BLAST on NCBI

transcript from alignment at sc0000075:615755..616212+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007267 ID=TCONS_00007267|Name=TCONS_00007267|organism=Clytia hemisphaerica|type=transcript|length=458bp|location=Sequence derived from alignment at sc0000075:615755..616212+ (Clytia hemisphaerica)
TACTAATTTATTAAAGATCATTGGAGGTAGGTTCGAGTCTGTtattttat
ttacttatttactCAACAAGGAATCAATTGCAAATCATCAAGTAATAATT
TCCATCCCGCAGCTATGTACAGGGTTCTCTTTAGCTAGCATTTAAATTGC
AATCAATCCTGATTTACATAATTACTTTAAAGGATACCCACGTAGGTCCT
TGTGTTAATAATTTGAACAAAACAACTATATCCATTAAGTATCGTTTCAG
AGATTGATCACCGACTAACAACTGAATTTAATTGATCACGAATTTTGCCT
AAACCGTCTAACATAGTGTCTAAGGTTTNGATTGATCACCGACTAACAAC
TGAATTTAATTGATCACGAATTTTGCCTAAACCATCTAACATAGTGTCTA
AGGTTTCTTTAGAAAGTTCGACAGTAATATTTGATGGTTTTTCTTCCTCG
GCTGTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004083XLOC_004083Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007267-exon-sc0000075-1491911889:615755..616066TCONS_00007267-exon-sc0000075-1491911889:615755..616066Clytia hemisphaericaexon
TCONS_00007267-exon-sc0000075-1510915933:615755..616066TCONS_00007267-exon-sc0000075-1510915933:615755..616066Clytia hemisphaericaexon
TCONS_00007267-exon-sc0000075-1575043694:615755..616066TCONS_00007267-exon-sc0000075-1575043694:615755..616066Clytia hemisphaericaexon
TCONS_00007267-exon-sc0000075-1491911889:616145..616212TCONS_00007267-exon-sc0000075-1491911889:616145..616212Clytia hemisphaericaexon
TCONS_00007267-exon-sc0000075-1510915933:616145..616212TCONS_00007267-exon-sc0000075-1510915933:616145..616212Clytia hemisphaericaexon
TCONS_00007267-exon-sc0000075-1575043694:616145..616212TCONS_00007267-exon-sc0000075-1575043694:616145..616212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:615755..616212 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.0726	22.3111	6.52066	8.05827	1.80553	3.37094	4.03076	11.1873	2.86013	2.99154	5.68944	0.639814	2.22569	0.714795	0	0	0	0	2.24355e-07	0	5.26758	5.25657	8.28564	12.8057	1.25389	5.86371	3.86854	3.18595	4.70733	7.98302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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