TCONS_00007225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007225
Unique NameTCONS_00007225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007225 ID=TCONS_00007225|Name=TCONS_00007225|organism=Clytia hemisphaerica|type=transcript|length=527bp
cgaaaactttttttgttacTGTGGTtcaaagtgacgaaaatttttaaaat
tttgtaaccCTTGAAAAAGGGGGTGCCCGTGACACAAGGGGTTGTGTTAG
ACCTCTTAGGGTTTTTCAAGAAATGTAAGTTATATATTGTTTTAAATGGC
TTATGATGTTTTTTTATGCTTTGACATCGAGTCATTGCTAATTGGCTAGT
CATTTCATTGTTTGTACTTTAGTACCCTGGTGTTTGCCTTATCTTGATCA
CAAGGAGAAGAAAATAGCTAATTGCAAAGCTATTCTGTTgtcgatttcga
tttttgaacaaaatacaAGCATTTATAAACATAATTAAGgcaataaagat
tttttgttgattttactGACTGATAATATTTCGTCTCTTTTAAAgacttt
gagagacttttttgttgttgagtTCAATGTGGTGAAGACGCTTCACTAGG
CTCCGTTAAAACAACTTAACATTTTCTGGTATTGATACTTGATAGTGGTT
TTCAAACCATCCTTAATTTGAGAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000074:399079..399605

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007225 ID=TCONS_00007225|Name=TCONS_00007225|organism=Clytia hemisphaerica|type=transcript|length=527bp|location=Sequence derived from alignment at sc0000074:399079..399605 (Clytia hemisphaerica)
CTTTTCTCAAATTAAGGATGGTTTGAAAACCACTATCAAGTATCAATACC
AGAAAATGTTAAGTTGTTTTAACGGAGCCTAGTGAAGCGTCTTCACCACA
TTGAactcaacaacaaaaaagtctctcaaagtcTTTAAAAGAGACGAAAT
ATTATCAGTCagtaaaatcaacaaaaaatctttattgcCTTAATTATGTT
TATAAATGCTtgtattttgttcaaaaatcgaaatcgacAACAGAATAGCT
TTGCAATTAGCTATTTTCTTCTCCTTGTGATCAAGATAAGGCAAACACCA
GGGTACTAAAGTACAAACAATGAAATGACTAGCCAATTAGCAATGACTCG
ATGTCAAAGCATAAAAAAACATCATAAGCCATTTAAAACAATATATAACT
TACATTTCTTGAAAAACCCTAAGAGGTCTAACACAACCCCTTGTGTCACG
GGCACCCCCTTTTTCAAGggttacaaaattttaaaaattttcgtcacttt
gaACCACAgtaacaaaaaaagttttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004056XLOC_004056Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007225-exon-sc0000074-1491911889:399079..399605TCONS_00007225-exon-sc0000074-1491911889:399079..399605Clytia hemisphaericaexon
TCONS_00007225-exon-sc0000074-1510915933:399079..399605TCONS_00007225-exon-sc0000074-1510915933:399079..399605Clytia hemisphaericaexon
TCONS_00007225-exon-sc0000074-1575043694:399079..399605TCONS_00007225-exon-sc0000074-1575043694:399079..399605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:399079..399605 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.0741985	0	0	0.0679847	3.26631	4.29213	0.237193	0.124102	3.3439	3.78821	1.02335	2.09334	0.958261	0.534516	0.152978	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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