TCONS_00007220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007220
Unique NameTCONS_00007220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007220 ID=TCONS_00007220|Name=TCONS_00007220|organism=Clytia hemisphaerica|type=transcript|length=618bp
CAAATTGGcttcttttattcaaaagaaaaatattaacgCACTTTTTATGG
ACGAGTGTGATATTTCCGGTAATGAATTGACAGAAATGATGAACGACTTA
AAAGAAATTGACGTCGTTTGGATTGCATCTGACGCAGCCGGTCACCGCGC
TTTCTTTAAAGGTTGGGATAAAAGTTCAATATACGGAGACTTTTCAGTGT
ATGATGATTTTACGAAATTCGAACTTTCAACCAACTTACGCAATCCAAAG
TCTATAGTAAGTGCAGCATTGAACTTTGATAATTTTAAATACAATTTCGG
TTTGAATCTCCCACCACCTAACTTTCCAAACGGCTTTGCTCCCATATACG
CTGATACGGTGGAAGAAGCGATGAAGAAATTGCGACTAGTCACTAATAGT
GGTGTTTTAATTGTGTGTGGATCTCAGTCCAAATATACAGAAGCAACGAA
TAACCTAACCATGAATCAGAAAGGGTATAGTTCGGCAGATGGAGAAAATA
GTTTCATGGTTGGTGAAAGTCCGTATCAACACCTCAAGGATGGAAATGTT
TTAGTTGTCTGGCACTTTGATTTTATCACCGGCTTTGAGTGGCCTAATAT
TATCATCTATATCGGAAA
Run BLAST on NCBI

protein sequence of TCONS_00007220-protein

>TCONS_00007220-protein ID=TCONS_00007220-protein|Name=TCONS_00007220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
KLASFIQKKNINALFMDECDISGNELTEMMNDLKEIDVVWIASDAAGHRA
FFKGWDKSSIYGDFSVYDDFTKFELSTNLRNPKSIVSAALNFDNFKYNFG
LNLPPPNFPNGFAPIYADTVEEAMKKLRLVTNSGVLIVCGSQSKYTEATN
NLTMNQKGYSSADGENSFMVGESPYQHLKDGNVLVVWHFDFITGFEWPNI
IIYIG
Run BLAST on NCBI

transcript from alignment at sc0000074:271647..272264

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007220 ID=TCONS_00007220|Name=TCONS_00007220|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at sc0000074:271647..272264 (Clytia hemisphaerica)
TTTCCGATATAGATGATAATATTAGGCCACTCAAAGCCGGTGATAAAATC
AAAGTGCCAGACAACTAAAACATTTCCATCCTTGAGGTGTTGATACGGAC
TTTCACCAACCATGAAACTATTTTCTCCATCTGCCGAACTATACCCTTTC
TGATTCATGGTTAGGTTATTCGTTGCTTCTGTATATTTGGACTGAGATCC
ACACACAATTAAAACACCACTATTAGTGACTAGTCGCAATTTCTTCATCG
CTTCTTCCACCGTATCAGCGTATATGGGAGCAAAGCCGTTTGGAAAGTTA
GGTGGTGGGAGATTCAAACCGAAATTGTATTTAAAATTATCAAAGTTCAA
TGCTGCACTTACTATAGACTTTGGATTGCGTAAGTTGGTTGAAAGTTCGA
ATTTCGTAAAATCATCATACACTGAAAAGTCTCCGTATATTGAACTTTTA
TCCCAACCTTTAAAGAAAGCGCGGTGACCGGCTGCGTCAGATGCAATCCA
AACGACGTCAATTTCTTTTAAGTCGTTCATCATTTCTGTCAATTCATTAC
CGGAAATATCACACTCGTCCATAAAAAGTGcgttaatatttttcttttga
ataaaagaagCCAATTTG

Coding sequence (CDS) from alignment at sc0000074:271647..272264

>TCONS_00007220 ID=TCONS_00007220|Name=TCONS_00007220|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0000074:271647..272264 (Clytia hemisphaerica)
TCCGATATAGATGATAATATTAGGCCACTCAAAGCCGGTGATAAAATCAA
AGTGCCAGACAACTAAAACATTTCCATCCTTGAGGTGTTGATACGGACTT
TCACCAACCATGAAACTATTTTCTCCATCTGCCGAACTATACCCTTTCTG
ATTCATGGTTAGGTTATTCGTTGCTTCTGTATATTTGGACTGAGATCCAC
ACACAATTAAAACACCACTATTAGTGACTAGTCGCAATTTCTTCATCGCT
TCTTCCACCGTATCAGCGTATATGGGAGCAAAGCCGTTTGGAAAGTTAGG
TGGTGGGAGATTCAAACCGAAATTGTATTTAAAATTATCAAAGTTCAATG
CTGCACTTACTATAGACTTTGGATTGCGTAAGTTGGTTGAAAGTTCGAAT
TTCGTAAAATCATCATACACTGAAAAGTCTCCGTATATTGAACTTTTATC
CCAACCTTTAAAGAAAGCGCGGTGACCGGCTGCGTCAGATGCAATCCAAA
CGACGTCAATTTCTTTTAAGTCGTTCATCATTTCTGTCAATTCATTACCG
GAAATATCACACTCGTCCATAAAAAGTGcgttaatatttttcttttgaat
aaaagaagCCAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004051XLOC_004051Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007220-proteinTCONS_00007220-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007220-exon-sc0000074-1491911889:271647..272264TCONS_00007220-exon-sc0000074-1491911889:271647..272264Clytia hemisphaericaexon
TCONS_00007220-exon-sc0000074-1510915933:271647..272264TCONS_00007220-exon-sc0000074-1510915933:271647..272264Clytia hemisphaericaexon
TCONS_00007220-exon-sc0000074-1575043694:271647..272264TCONS_00007220-exon-sc0000074-1575043694:271647..272264Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:271647..272264 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0867426	0.0845877	0.196429	0.192175	0	0.092437	0	0	0.0730964	0.181083	1.31823	0.0577701	0.519208	0.539203	1.52692	2.43149	0.520939	0.400459	0.829884	0.578943	0	0.122723	0	0	0	0	0	0	0.192555	0.196183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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