TCONS_00007216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007216
Unique NameTCONS_00007216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007216 ID=TCONS_00007216|Name=TCONS_00007216|organism=Clytia hemisphaerica|type=transcript|length=449bp
aaaaaaagtatcgagtcggaTCACttttatagaaagaaagttcttgtgtg
tgtttcactaaatttgtaatgtttatcaaagtttctctctgtgtcatatt
aattgtaaagaaagttaattttttttaatcataatgactgttgtaaaaac
gaTTATcgtgttggtatatattttctaacattttgttaaacacacgcaac
aaccctCTACTCAGAATAATGTTCGAACTCGAcattttttccggacaccc
tgaaTTTCTAGATTCGCCATGGTATGCAATTATGGCATACTTTATACATG
AACTCGCAGTGACAATGTCATGTTCATGTAAAAGAAAGTAGTTACTTTAC
TGTTACTGCCGCTCTGCGTCAGTTTATTTGTATATAGTTAATTGTTCTTA
TCACTTTAATGTTCTTTAACTATCTTTTGTGTTGTTATTTTATTGCTTT
Run BLAST on NCBI

transcript from alignment at sc0000074:115344..115792

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007216 ID=TCONS_00007216|Name=TCONS_00007216|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0000074:115344..115792 (Clytia hemisphaerica)
AAAGCAATAAAATAACAACACAAAAGATAGTTAAAGAACATTAAAGTGAT
AAGAACAATTAACTATATACAAATAAACTGACGCAGAGCGGCAGTAACAG
TAAAGTAACTACTTTCTTTTACATGAACATGACATTGTCACTGCGAGTTC
ATGTATAAAGTATGCCATAATTGCATACCATGGCGAATCTAGAAAttcag
ggtgtccggaaaaaatgTCGAGTTCGAACATTATTCTGAGTAGagggttg
ttgcgtgtgtttaacaaaatgttagaaaatatataccaacacgATAAtcg
tttttacaacagtcattatgattaaaaaaaattaactttctttacaatta
atatgacacagagagaaactttgataaacattacaaatttagtgaaacac
acacaagaactttctttctataaaaGTGAtccgactcgatacttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004047XLOC_004047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007216-exon-sc0000074-1491911889:115344..115792TCONS_00007216-exon-sc0000074-1491911889:115344..115792Clytia hemisphaericaexon
TCONS_00007216-exon-sc0000074-1510915933:115344..115792TCONS_00007216-exon-sc0000074-1510915933:115344..115792Clytia hemisphaericaexon
TCONS_00007216-exon-sc0000074-1575043694:115344..115792TCONS_00007216-exon-sc0000074-1575043694:115344..115792Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:115344..115792 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147824	0.144152	0.669495	0.338974	0.797395	0.315056	0.950255	2.68601	1.86853	2.31447	2.69578	4.15225	1.57301	1.32729	0.503636	0.720638	0.665825	0.796191	0.47142	0.657743	1.85802	2.30055	0.508476	1.07865	2.38068	3.82446	4.49373	4.14955	0	0.334329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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