TCONS_00007211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007211
Unique NameTCONS_00007211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1074

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007211 ID=TCONS_00007211|Name=TCONS_00007211|organism=Clytia hemisphaerica|type=transcript|length=1074bp
gtgttTGAAAATACAGCTGAATACATAGAAAATTCATAATGATTTTGTAA
CCAGTTGTAAATGGTAGTAATACTAATAACAAATTCAGTCTTACTGAATA
GNACGTGACACGAtccaaagcaaataaattcagctttcggcactttcgtt
cgtttcgtgaaaaccaaacagttctttttatcaatgcatgccattaaaaa
cttgaaattctttatatacttgtcaagaatattttccttaacaaaacaaa
ggaatttcaatgtctttgattaaaccaggtaaccaacgagggatttttgt
aaaatatctctTGTGTCTCTTNAACATGGCACTTAAAAcaatttgtttga
aatttttaacaagaGAAGAAAAAGCtgatgtttttgaaaacaattttcgt
tGCATTCGAGATATTAAGGAATGGGCTGGTAAAAAaaGTACACGAGGATG
ATACAATAGCTACAGTGAAAGAAAAGTTACATGCATTGAAACCAAAATAT
CCAATACCTTATATATCTTTATGTGATTACTGTGACCCGCGTATTGAGCT
TGAAGATGATAAAACGTTAGTGGACTATGGACTGCAACCAAGATCTAGTG
TAGAACTAAGAAGAATTATAACCCTCGTTGTTAAGCTACAGGCTAAAAAT
GGTCaaacattgaaaaaagattCATTTACATATGTAAGCAAATATCTAGA
CGAAAGGTTATTGATTGACCTTATCAATGATATAACAAAGGAAATGGATT
TACCAAAAGCAACAACCTATTATTTTATGGTGAATGGTGCAAGAGAGGGC
CATAATTTCGGTTGTGAATCCATTAGAAATGTGGTATGTAACTTTGGCGA
GGAAATACATTGTATTTTTAAATTACTTTAGAATTTGTCAAATAATATCT
TTGCGTTGaaattattgtttcatttttatgttcAATGTTTCAGATCACTT
TAAATTTTGTTATCTGTTTATTCAATTATTGACAGTGGACTAAAGTGGTG
AAAGTTTTAAACTAAACCCCAGTGGTACTCGGGTTAAGAATTTTCGGTAT
GATCGGACCAGACCTACAAAACAG
Run BLAST on NCBI

protein sequence of TCONS_00007211-protein

>TCONS_00007211-protein ID=TCONS_00007211-protein|Name=TCONS_00007211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MFLKTIFVAFEILRNGLVKKVHEDDTIATVKEKLHALKPKYPIPYISLCD
YCDPRIELEDDKTLVDYGLQPRSSVELRRIITLVVKLQAKNGQTLKKDSF
TYVSKYLDERLLIDLINDITKEMDLPKATTYYFMVNGAREGHNFGCESIR
NVVCNFGEEIHCIFKLL
Run BLAST on NCBI

transcript from alignment at sc0000074:692138..693414-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007211 ID=TCONS_00007211|Name=TCONS_00007211|organism=Clytia hemisphaerica|type=transcript|length=1277bp|location=Sequence derived from alignment at sc0000074:692138..693414- (Clytia hemisphaerica)
GTGTTTGAAAATACAGCTGAATACATAGAAAATTCATAATGATTTTGTAA
CCAGTTGTAAATGGTAGTAATACTAATAACAAATTCAGTCTTACTGAATA
GNACGTGACACGATCCAAAGCAAATAAATTCAGCTTTCGGCACTTTCGTT
CGTTTCGTGAAAACCAAACAGTTCTTTTTATCAATGCATGCCATTAAAAA
CTTGAAATTCTTTATATACTTGTCAAGAATATTTTCCTTAACAAAACAAA
GGAATTTCAATGTCTTTGATTAAACCAGGTAACCAACGAGGGATTTTTGT
AAAATATCTCTTGTGTCTCTTNAACATGGCACTTAAAACAATTTGTTTGA
AATTTTTAACAAGAGAAGAAAAAGCTGATGTTTTTGAAAACAATTTTCGT
TGCATTCGAGATATTAAGGAATGGGCTGGTAAAAAGTATAAAGTTCATTT
TTGGAATCAATCATTATTGTTCAATGGAAAAGTCCTGAAAAATGATTACA
AGAATTTGTTTGAATTATTTCGAGAAAACCCAAATGATTCTGGTACTCTG
AATTTCCAAGTTCTTGCAGCAAAAACACCTTTCAATATAAAGATTGTTCA
GTATTCTGATTCTTCTAACCGAAAACATTTTTTATTAGAAGTACACGAGG
ATGATACAATAGCTACAGTGAAAGAAAAGTTACATGCATTGAAACCAAAA
TATCCAATACCTTATATATCTTTATGTGATTACTGTGACCCGCGTATTGA
GCTTGAAGATGATAAAACGTTAGTGGACTATGGACTGCAACCAAGATCTA
GTGTAGAACTAAGAAGAATTATAACCCTCGTTGTTAAGCTACAGGCTAAA
AATGGTCAAACATTGAAAAAAGATTCATTTACATATGTAAGCAAATATCT
AGACGAAAGGTTATTGATTGACCTTATCAATGATATAACAAAGGAAATGG
ATTTACCAAAAGCAACAACCTATTATTTTATGGTGAATGGTGCAAGAGAG
GGCCATAATTTCGGTTGTGAATCCATTAGAAATGTGGTATGTAACTTTGG
CGAGGAAATACATTGTATTTTTAAATTACTTTAGAATTTGTCAAATAATA
TCTTTGCGTTGAAATTATTGTTTCATTTTTATGTTCAATGTTTCAGATCA
CTTTAAATTTTGTTATCTGTTTATTCAATTATTGACAGTGGACTAAAGTG
GTGAAAGTTTTAAACTAAACCCCAGTGGTACTCGGGTTAAGAATTTTCGG
TATGATCGGACCAGACCTACAAAACAG

Coding sequence (CDS) from alignment at sc0000074:692138..693414-

>TCONS_00007211 ID=TCONS_00007211|Name=TCONS_00007211|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000074:692138..693414- (Clytia hemisphaerica)
AAGTACACGAGGATGATACAATAGCTACAGTGAAAGAAAAGTTACATGCA
TTGAAACCAAAATATCCAATACCTTATATATCTTTATGTGATTACTGTGA
CCCGCGTATTGAGCTTGAAGATGATAAAACGTTAGTGGACTATGGACTGC
AACCAAGATCTAGTGTAGAACTAAGAAGAATTATAACCCTCGTTGTTAAG
CTACAGGCTAAAAATGGTCAAACATTGAAAAAAGATTCATTTACATATGT
AAGCAAATATCTAGACGAAAGGTTATTGATTGACCTTATCAATGATATAA
CAAAGGAAATGGATTTACCAAAAGCAACAACCTATTATTTTATGGTGAAT
GGTGCAAGAGAGGGCCATAATTTCGGTTGTGAATCCATTAGAAATGTGGT
ATGTAACTTTGGCGAGGAAATACATTGTATTTTTAAATTACTTTAGATGT
TTTTGAAAACAATTTTCGTTGCATTCGAGATATTAAGGAATGGGCTGGTA
AAAAAAGTACACGAGGATGATACAATAGCTACAGTGAAAGAAAAGTTACA
TGCATTGAAACCAAAATATCCAATACCTTATATATCTTTATGTGATTACT
GTGACCCGCGTATTGAGCTTGAAGATGATAAAACGTTAGTGGACTATGGA
CTGCAACCAAGATCTAGTGTAGAACTAAGAAGAATTATAACCCTCGTTGT
TAAGCTACAGGCTAAAAATGGTCAAACATTGAAAAAAGATTCATTTACAT
ATGTAAGCAAATATCTAGACGAAAGGTTATTGATTGACCTTATCAATGAT
ATAACAAAGGAAATGGATTTACCAAAAGCAACAACCTATTATTTTATGGT
GAATGGTGCAAGAGAGGGCCATAATTTCGGTTGTGAATCCATTAGAAATG
TGGTATGTAACTTTGGCGAGGAAATACATTGTATTTTTAAATTACTTTAG
ATGTTTTTGAAAACAATTTTCGTTGCATTCGAGATATTAAGGAATGGGCT
GGTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004042XLOC_004042Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007211-proteinTCONS_00007211-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007211-exon-sc0000074-1575043694:692980..693414TCONS_00007211-exon-sc0000074-1575043694:692980..693414Clytia hemisphaericaexon
TCONS_00007211-exon-sc0000074-1575043694:692138..692776TCONS_00007211-exon-sc0000074-1575043694:692138..692776Clytia hemisphaericaexon
TCONS_00007211-exon-sc0000074-1510915933:692980..693414TCONS_00007211-exon-sc0000074-1510915933:692980..693414Clytia hemisphaericaexon
TCONS_00007211-exon-sc0000074-1510915933:692138..692776TCONS_00007211-exon-sc0000074-1510915933:692138..692776Clytia hemisphaericaexon
TCONS_00007211-exon-sc0000074-1491911889:692980..693414TCONS_00007211-exon-sc0000074-1491911889:692980..693414Clytia hemisphaericaexon
TCONS_00007211-exon-sc0000074-1491911889:692138..692776TCONS_00007211-exon-sc0000074-1491911889:692138..692776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:692138..693414 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.2435e-09	0	0	0	0	0	0.18844	8.16658e-07	0	0	0.632192	0.737509	0	9.59439e-09	0	0.808567	0	0	0	0	1.72012	0.807038	0	0	0	0.312507
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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