TCONS_00007198 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007198
Unique NameTCONS_00007198
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2693

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007198 ID=TCONS_00007198|Name=TCONS_00007198|organism=Clytia hemisphaerica|type=transcript|length=2693bp
GTAATTTAACTGTTCCTCCCATACCAAATTTACAATCCTAATAAAGTGTA
AAGAAAATTAGAGTGCGATGGTGGGCGGGAACTTAAAAAGGATATAAAAG
TAGGTTCACTTTCCGTGATTACATCTATATTGTATCTTTCGAATAAGAAG
TTAAAGAAGTTTAACTCTCTTCTGATCTGCAATGACGGGGATTTTAAGTT
TTACTGCTTTATTTTGCGTGATTTGTTCGTCTTGGGCGCAAGATGGGGCG
TTGGCGGACAACTCGAAGTGTGAACGACAACTTGATGGTTGTAGCGTACC
TCTTAATATCCCATTCCCATACAAGCAGTTTTTCCATAAAGCTTGCTTGA
AACATGATGTCTGCTATCGCTGTGGCAAGGTTTACAACTGGACACGAAAT
GAATGTGACAAAGCGTTTGCCGCCAACATGAACACCCTTTGTCTCTTGTG
GCATCAAGGGCGCACCGCCAATTCTTACTCTTGGTTTATTTTCGAACGTC
TCAAAAGTGTTTTTGTTGTTGCTAAGAAACTGGTCACGTGGCTTGGTATC
GATTGCAAAAGTTTGGATCATTGTTTACATGGCTCGAGCGTGTACTACCA
CGCCGTGGATGGCTTCGGTCACGGTTCGTTTGCCACTGGAACTCAAGTAT
GTAATTACAAGTGCGCTAAATCATATGGTGCACCTGGAAACTTGATTTGA
TAATTTCAATttgatatacacgttttttttataagaacttccaaaacttt
ttgaagactttggatgttcttaactatttgagtctaaaaatgttcttaac
atgttcttaacatgttcttatctaTGCCATTCtttgagtatttttgacca
cagcaagaaattgagttttttagagtccacaaagccttaaaatattctta
gctTGTTCAATATtctgaccatcgaagccttatgttcttatatagtttgt
tcttataaaaaacgtgtttaagagcattttattttttacacacatttaca
taatttagataaatattttgcattgttaagaatttttttcaatctgaATT
AGAGTTAATAGTGCACTCTTTTAAGTTTCTTAGGACTGATATTTTATTAC
AGACAtggctttttcttttatcccaCCTTCTAAACTCTGTAGGCTGTTAA
AACGGTTAAATCTTTTGATTCTATAGTGTCCAAATCATgacctttttcta
tttttggacCCTTCTAGAAGGGTTTCTTGGTTTTGGCTTTGgttcatcaa
aaaatattttccaggtTTGAAAATGGTACCCTATCCGCTCGCACCTATCA
TATGGGACCCTAGATGACCTTTCCCGGGTTGCGGGGCTCCTATTGCTAAA
ATGACGCTTTTAAGTTAGTCTTTCCTCCTTCGAATGTCGAAAAGTTTGGA
TTTATAGCATTTTAGTTTTCTCACTTCAAAGTTGTacaatttttgttgaa
acaCCCGACCAAAGTCTCATAATAAAAAGTTAGTGGGAAAGAATTCTTTG
AAACAAATTTTACGTAGATTTTAAGTCAAGACAAGAGCTGTTACCGTTAC
CCCAGGTATAGAACAACCATCTTAGAAATAATTCAATTTATATCCTTTAT
ATCTTGGAGAAAACTTGTATATTGATTGTACATATAATATTGGGACGATT
TCATATGATTTGGATTAAATTATGATAttacattttttcttgaaatttga
cCTATAAAACTATTCTCGATATTTATGACGCAATGGTATGTACGGAAGCA
CCGAAAAAAGACCGGGTGTTCCCTGCTAATTTTGGATTTAACATACTCTC
CCTATCCAAACTCTCCCTTAATAATCAAAAGCActaaaatcgcaaaaatt
cggATATTGCTGCGGTAAAGCTtcttttttgcgatttttgcgattttgat
tgttaagggaGCGTTTGGACTGTTATGAGTAGTTCACTAGCAATgaaact
acagttgacgctctctaattcgacgttcttaCATTCGATaggctccatta
ttcgatggaatttaaagtccccgtcagcgagaaactctcataaacgacgc
tccattattcgataagctcccttattcgatgaaaatcaaattccccttga
aggtcgaattagagagcttcAACTGTAGTGGCAAATAACCGGGCTGTTTT
ttggtgcttccgttaaaacaatacgtcatgaatatcaacaATACAGTGTG
TCcgataaaaatttaaacagaaaCTATTCAAATAGAATCTGGCTAATACT
TTATGATGTAATTAATTGGTTCtgtatttgaaataaaaacgatTATATTA
GGGGTATGGCATCTATcggagaaaaaaagaaaagacattTCAGCCCCTCT
TATACAAATATGTTCGTTTTTCCCGGATGTATTGTatagacattttcata
aattacgtcacgagcaacgctAACCTCGTTTTCAAACCATTGCTATAGTA
ATTACTTCCCAGAGGAGCTGcaattataaagaaaacagttgaagactcaa
gggatttgatcaccttggtaatggtttcaaaacaaaGCAGTCGTTGCACT
CACAATAATTTATGGAAATACCTTTACTGCTTTCATTTCCGGGGGGCACA
CTGGGCCCAGAggacaaaagtttggaaataggGAGTGGGAGAACAACAAG
ATAgtatttcttacattttttgtaTTATTAAGGCATTAGTAGA
Run BLAST on NCBI

transcript from alignment at sc0000074:483068..486812-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007198 ID=TCONS_00007198|Name=TCONS_00007198|organism=Clytia hemisphaerica|type=transcript|length=3745bp|location=Sequence derived from alignment at sc0000074:483068..486812- (Clytia hemisphaerica)
GTAATTTAACTGTTCCTCCCATACCAAATTTACAATCCTAATAAAGTGTA
AAGAAAATTAGAGTGCGATGGTGGGCGGGAACTTAAAAAGGATATAAAAG
TAGGTTCACTTTCCGTGATTACATCTATATTGTATCTTTCGAATAAGAAG
TTAAAGAAGTTTAACTCTCTTCTGATCTGCAATGACGGGGATTTTAAGTT
TTACTGCTTTATTTTGCGTGATTTGTTCGTCTTGGGCGCAAGATGGGGCG
TTGGCGGACAACTCGAAGTGTGAACGACAACTTGATGGTTGTAGCGTACC
TCTTAATATCCCATTCCCATACAAGCAGTTTTTCCATAAAGCTTGCTTGA
AACATGATGTCTGCTATCGCTGTGTAAGCATTTTACTTTTCGAAAAAGTT
GTCTATTGATTCACCACCAGTTCGAATTATTTGTAAAAAAAAGTCCAGAA
AAAAACTATGGAAATTTTTACGTGACGTTTTAATGATGTAGTTTCTCGCT
TGAAAGTAATCGAGTTTTCTTGAAAAAGTTATGCACAACGAAAAGTGAAT
CACTCTAAGTTAATTGGATAAATGAGCAATAATTACAAGTCTTACAGTAC
CCTATTCTCAATGTAACAGTGCTCCGAACAATAAAGTACACAGTTTTCGA
ATTTTTTAAATAACCTCTCATTGGTTTAAGATTTTGCACATTGACATTAT
TATCCAATCAGAGACTTTGATCACTTAATATTTTTTCGTGTCCTTTTACA
TGAAATCAAAATAGAGAGTTAAGTTTGATACCGTGTATTCAGATGTGAAC
AAAAGTCTTGCGAATTTCAATTTAGAAGACGGACATAGTCTTTTGATTCA
TCCACGGTCTCTAATTCTAGAATCTAAAGAAATCAAAAATCTTTTTTTGG
CGCTTCGCTTATTTCACAGGATTCGTGTTTTTAGTACATAATATTTTGTT
ACTGAAATAATCAATTTTTATGGATTTAATTTACGATTGATCCGCTCTTT
TGCAAATTGAGATACGAGTTTTACAAAAGCAACAAATATGGAAAAGAGTT
CTTGAATTCCCCAAGTCAACTGAAAAAAATAATTTTTGCAACGTAATTCT
CGAAGGAAAATCTGCACAGCTTTGTGTTTTTCTCAAATACTGTAAATTGA
ATAGGAAATAGCATGTAAAAGATGCATATCGGCCAAAACTTAGTCGTCCC
TAAGTGACTAAATTTTGTTTTGGTGACTAAAATTAGGACCGACTAAAAAT
TTGAGCCGACCAAATTTTGGACCGACTAAAAATGACCAAAACTTAGTTAT
TAGTCGGCCTTTAGTGACTGAATTTTGACAAGGTGACTAAAATTAGGGCC
GACTAATAATTAAGGCCGACTAAGTCTTGGCAGATAAGGTAGGTTAATTA
TGATATTTTCTTAACGCACGTTCAGGGCAAGGTTTACAACTGGACACGAA
ATGAATGTGACAAAGCGTTTGCCGCCAACATGAACACCCTTTGTCTCTTG
TGGCATCAAGGGCGCACCGCCAATTCTTACTCTTGGTTTATTTTCGAACG
TCTCAAAAGTGTTTTTGTTGTTGCTAAGAAACTGGTCACGTGGCTTGGTA
TCGATTGCAAAAGTTTGGATCATTGTTTACATGGCTCGAGCGTGTACTAC
CACGCCGTGGATGGCTTCGGTCACGGTTCGTTTGCCACTGGAACTCAAGT
ATGTAATTACAAGTGCGCTAAATCATATGGTGCACCTGGAAACTTGATTT
GATAATTTCAATTTGATATACACGTTTTTTTTATAAGAACTTCCAAAACT
TTTTGAAGACTTTGGATGTTCTTAACTATTTGAGTCTAAAAATGTTCTTA
ACATGTTCTTAACATGTTCTTATCTATGCCATTCTTTGAGTATTTTTGAC
CACAGCAAGAAATTGAGTTTTTTAGAGTCCACAAAGCCTTAAAATATTCT
TAGCTTGTTCAATATTCTGACCATCGAAGCCTTATGTTCTTATATAGTTT
GTTCTTATAAAAAACGTGTTTAAGAGCATTTTATTTTTTACACACATTTA
CATAATTTAGATAAATATTTTGCATTGTTAAGAATTTTTTTCAATCTGAA
TTAGAGTTAATAGTGCACTCTTTTAAGTTTCTTAGGACTGATATTTTATT
ACAGACATGGCTTTTTCTTTTATCCCACCTTCTAAACTCTGTAGGCTGTT
AAAACGGTTAAATCTTTTGATTCTATAGTGTCCAAATCATGACCTTTTTC
TATTTTTGGACCCTTCTAGAAGGGTTTCTTGGTTTTGGCTTTGGTTCATC
AAAAAATATTTTCCAGGTTTGAAAATGGTACCCTATCCGCTCGCACCTAT
CATATGGGACCCTAGATGACCTTTCCCGGGTTGCGGGGCTCCTATTGCTA
AAATGACGCTTTTAAGTTAGTCTTTCCTCCTTCGAATGTCGAAAAGTTTG
GATTTATAGCATTTTAGTTTTCTCACTTCAAAGTTGTACAATTTTTGTTG
AAACACCCGACCAAAGTCTCATAATAAAAAGTTAGTGGGAAAGAATTCTT
TGAAACAAATTTTACGTAGATTTTAAGTCAAGACAAGAGCTGTTACCGTT
ACCCCAGGTATAGAACAACCATCTTAGAAATAATTCAATTTATATCCTTT
ATATCTTGGAGAAAACTTGTATATTGATTGTACATATAATATTGGGACGA
TTTCATATGATTTGGATTAAATTATGATATTACATTTTTTCTTGAAATTT
GACCTATAAAACTATTCTCGATATTTATGACGCAATGGTATGTACGGAAG
CACCGAAAAAAGACCGGGTGTTCCCTGCTAATTTTGGATTTAACATACTC
TCCCTATCCAAACTCTCCCTTAATAATCAAAAGCACTAAAATCGCAAAAA
TTCGGATATTGCTGCGGTAAAGCTTCTTTTTTGCGATTTTTGCGATTTTG
ATTGTTAAGGGAGCGTTTGGACTGTTATGAGTAGTTCACTAGCAATGAAA
CTACAGTTGACGCTCTCTAATTCGACGTTCTTACATTCGATAGGCTCCAT
TATTCGATGGAATTTAAAGTCCCCGTCAGCGAGAAACTCTCATAAACGAC
GCTCCATTATTCGATAAGCTCCCTTATTCGATGAAAATCAAATTCCCCTT
GAAGGTCGAATTAGAGAGCTTCAACTGTAGTGGCAAATAACCGGGCTGTT
TTTTGGTGCTTCCGTTAAAACAATACGTCATGAATATCAACAATACAGTG
TGTCCGATAAAAATTTAAACAGAAACTATTCAAATAGAATCTGGCTAATA
CTTTATGATGTAATTAATTGGTTCTGTATTTGAAATAAAAACGATTATAT
TAGGGGTATGGCATCTATCGGAGAAAAAAAGAAAAGACATTTCAGCCCCT
CTTATACAAATATGTTCGTTTTTCCCGGATGTATTGTATAGACATTTTCA
TAAATTACGTCACGAGCAACGCTAACCTCGTTTTCAAACCATTGCTATAG
TAATTACTTCCCAGAGGAGCTGCAATTATAAAGAAAACAGTTGAAGACTC
AAGGGATTTGATCACCTTGGTAATGGTTTCAAAACAAAGCAGTCGTTGCA
CTCACAATAATTTATGGAAATACCTTTACTGCTTTCATTTCCGGGGGGCA
CACTGGGCCCAGAGGACAAAAGTTTGGAAATAGGGAGTGGGAGAACAACA
AGATAGTATTTCTTACATTTTTTGTATTATTAAGGCATTAGTAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004036XLOC_004036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007198-exon-sc0000074-1575043694:486440..486812TCONS_00007198-exon-sc0000074-1575043694:486440..486812Clytia hemisphaericaexon
TCONS_00007198-exon-sc0000074-1575043694:483068..485387TCONS_00007198-exon-sc0000074-1575043694:483068..485387Clytia hemisphaericaexon
TCONS_00007198-exon-sc0000074-1510915933:486440..486812TCONS_00007198-exon-sc0000074-1510915933:486440..486812Clytia hemisphaericaexon
TCONS_00007198-exon-sc0000074-1510915933:483068..485387TCONS_00007198-exon-sc0000074-1510915933:483068..485387Clytia hemisphaericaexon
TCONS_00007198-exon-sc0000074-1491911889:486440..486812TCONS_00007198-exon-sc0000074-1491911889:486440..486812Clytia hemisphaericaexon
TCONS_00007198-exon-sc0000074-1491911889:483068..485387TCONS_00007198-exon-sc0000074-1491911889:483068..485387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:483068..486812 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.025792	0	0.0284045	0.0286795	0	0	0	0.0410659	0	0	0	0.0898789	3.85467	3.54789	0.0146703	0	1.23991	1.36362	21.1216	20.0467	8.23477	9.14968	1.09035	1.8818	3.79668	3.87464	0.198557	0	1.03407	0.94063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007198 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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