TCONS_00007185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007185
Unique NameTCONS_00007185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007185 ID=TCONS_00007185|Name=TCONS_00007185|organism=Clytia hemisphaerica|type=transcript|length=1566bp
CAGCTACAAGCTCAAGCTAAAGTATCCATGTAACAacctcaaaaatattt
cagtcaATAAGAAGAAAGGATTATTAAATAACTTCACATTAAAATGGATG
ACACATCATTTTATCTTCTCGGTGACCAAGTTAAGAAAAGTCCAATAAAT
ACCGTCAAAAAGTTCTTCAAAGTGAAGCCATGGAATTCTGAAGAATCATT
AGCCGCTTCAACTTTATCACAAGATGGACGAAACAAACAGAGCAGCTTGA
ACAGTAGCACGGCTTCTTTGAAAGCTAGTCCGTTGATGACCCGCAAAGAT
AATTTCGACTTTATCATCCCAAAATCACCGACAACGTCACGTGTCGGAAG
TTACAACAACATCGACGCACCACACGTCGGATCGATCGACGTCAAACATT
ATCTATCAACGGAAGAAGTCCAAGAGTTAGAGGAAGTTGGTACACAACTC
CGTCTTGGTGAAGTCAAATTTTCAATGATGTATAAAGACACAGACGAGAA
GCTCAAATTCATATTGAAATCTGTTTCAGTTTTTCTCAAACCCAGTCCTT
CAGTTGTAGGTTGTAATTGGGTTTGTGAGACAAACACAGTGCTCGAGgtt
ttaaattCCAAAAAGAAGCCAATCGAAGTCAGTAACGGTCAAGAACTTCT
TGTTGATTTCAAAAAGACTGACGTCACTGACCATACATTACGTCTCACCG
TTTACGACAATCGACGTAAGCACGTAAAGAACCCCGTCGGTCACGTGATT
TTTCCGTTACGTGATGCAAGAAACCTGGGTAAAATGAACAGTTATTCGAA
GAAACTAACCTTTTATTCTCAGCCTGCAGGATTTAACAGAGGAAACGTAA
ACATCGCACTGTCGTGGGGTATATCAGCTCAAAGGCTGGATGTGAAAATT
GGTGACGTAACAAACTTAAGATGTCCAGCTTATGGTGTCAACGGAAAAGA
ATTCTTCATCAAGACGATCGTATTCATATTGGATAACAAATACAAGTCAT
ACAAAACACCTCTACAACGCGCCACACCTGAACTAACATTCAAGGAAAAA
TTCACTATCCCTCTCACATCTCCACAACTCAAAGACTCCACAATTACATT
CCAATTATATTTAAAACATTATAATAAAAAGAAGATTGGACATAAAGTGT
TGGTTGGCAAAACAGTGATTGGACCTTACATGAGACATGGGGATCGTTCA
CTTTCCCAATGGGAAAAAATGATTACTAATCCATTGGAAGAGGTATCTGA
AcaacacattttatttttatgatgatttCTGTAAACGCTGTTAATTGGTA
GACACTACTTCGTCTTACATATAGCtgccataaaaaagtttctccaCAAT
ATTACTGAGGCAGAGGTGTGAGTAACCTCAGAATCAAGGAGGAGCTATAG
ATTTCCTAAATGAGTTCGTTAATATGATAAAACAACAAAAGATTAACAAA
GAGGTCGCCATTATCACCATTAATTCTATATTATATGTTTAATTATTTTC
TAGATGttattgtaaataattttttcaaatgattcaacttttaagtttca
aatttttgttgaCAAG
Run BLAST on NCBI

transcript from alignment at sc0000074:168364..173319-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007185 ID=TCONS_00007185|Name=TCONS_00007185|organism=Clytia hemisphaerica|type=transcript|length=4956bp|location=Sequence derived from alignment at sc0000074:168364..173319- (Clytia hemisphaerica)
CAGCTACAAGCTCAAGCTAAAGTATCCATGTAACAACCTCAAAAATATTT
CAGTCAATAAGAAGAAAGGATTATTAAATAACTTCACATTAAAATGGATG
ACACATCATTTTATCTTCTCGGTGACCAAGTTAAGAAAAGTCCAATAAAT
ACCGTCAAAAAGGTTCTTGTAGTTTTCAAATTTGTTTTTATGAGAATAAA
GAATAAAGCTGGGATGCATAAAACTCGAATCTCCATATCTTAACTTAATC
ATATAATCATTACTAGAACGGTTTTTCTGGTTCTTTGAAATGTCTTAGTG
TGCTTGACTGTACCCCGAGCTTTTACGGATAAACGATTAGATTACTGGTT
ACCACTTTGTGTTTGAGCGTACAGTTGTATTAACGTTTGTCTTAACTACC
CTCTTAGCAGATTTATATGATCTAAATGTTTTTGCATCAAATTCACAATA
TCTTTTGGAAAATGTAGCAAGTAGTATCAAAGACTTGACACTTATTGAAT
CCTTTTTTATTTATTTCCTTTCGTAGTTCTTCAAAGTGAAGCCATGGAAT
TCTGAAGAATCATTAGCCGCTTCAACTTTATCACAAGGTATTTACAACTT
TCATATACCAATCTATAGTAAAAACTCATTTAACGTATGTAAGTTATTAA
TGTTACTGGGCACTGAATTCGGACGGCTAAATTTTGATTATCTACACTCT
GACTGACTGAGAACAACAGTAAATCAGCACTTTTACAGCCCCCGATTTTG
CGGATCAGAAAAAACATAGGTTTTCCAATCGTTTCAGTCACTCCGCCCAC
TGACCTTTATATACCCTGGACAAAGCTTCTCAATCCCAGCCAAGCAAAAT
CTTTGATCGGAGTTTTTTGAAAATTGGTACCCTAATGTCGGCACTACTCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTAACATTGCAATGGCTTCTCCTTGGGTACCAATTCTAAAAAAACT
CCAATCAAAGATGGCAGATATTGTTTGGTCCAGGGTTATATAAAGGTCAG
TGACTCCGCCGTCCTAAAAAGCGCAAATACATAAACTCACTGACATCTAA
ATTCTTTGGAGACCTGTATTTTTGGACAAGGATTGTACCAGCTCAGCTCA
CTGGAAGCAAATAGTAGAATCCTACCAACTGACTGTCAAAGGGATAAGGA
ACATTTTTACTTGAATAACGTGTTCGCTTAGATGAAAATACTTTTCTTAC
TACTTCTAGATGGACGAAACAAACAGAGCAGCTTGAACAGTAGCACGGCT
TCTTTGAAAGCTAGTCCGTTGATGACCCGCAAAGGTACGCTATTATTTCA
TTACTTTACTAAGTCCTTAAGATGCTTTAGCTAAGTTGGTCACTGTAGAA
AGATAGGATAGAAGGGCTGAGGATAGTGCGTTGGCTAATGTGACATTAAT
ACTCGTTTTTTCATAAAAACAGATTCTATAAGAACATATGGCTACGATGG
CCAAAGAAAAATCTAAGAACATTTTAAGGCTTTTCGATCTCTTAAACATC
AATCCCTTAAAAATTGCATAAAATACTCACGAATTATTAAAAAATAGGAC
TACTTTAAGAACATTTTTAAGTTTAAAGCATGAAAAGTTAAGAAGATCCG
ATTATACTACTATATTACGTTGTTCCATACTTGTTTGGGCGTTATGGGTT
TTTAACTTTATTAGTTCCAATTGTAAAGAAGAAACTGTAATCGTTTCAGA
TAATTTCGACTTTATCATCCCAAAATCACCGACAACGTCACGTGTCGGAA
GTTACAACAACATCGACGCACCACACGTCGGATCGATCGACGTCAAACAT
TATCTATCAACGGAAGAAGTCCAAGAGTTAGAGGTAACTTTTTGCTCGAA
AAAGGTCGGGTGGGATTGAAATAATTAATCCCACTTTAATGGACGTTCTA
TGGACGTTGATATAACGTTTTGAGAGAATGGCACTTGTATTTAGGAAAAG
TATTACACTTTTTTCTTTTATAAGAAAAATTTAAGAAGAATGCTGATCAT
GAAAATACTCAATTAAAAATAGGGTACAAAGCCTGAAATACCTCAATAAG
ACCCTATAAATAAAAACAGGATAAGAACAATCTGAAGCTCAAAGTACTAA
AAAAGTAAGAACAGCCGAGTCTCTGTAAGTTTACTGGTTCTTATAATTAA
AGTGTATAGTGAGAGGTATTAGTAGAGAATTTTTTAAATTCTTTTGTATC
TCTTGCCGAACATTATGCAAGATAAATCACAAATACGAGACTCTATTATT
CGAATCTCTCTGTAATTCGAACAAATAATATTCCCGACCAAGTTCGAATC
AGTGAGAGTCAACTGTACTAGACTTTCAGTTCCATGTCTACAAAATATTT
CATCTTCCAGGAAGTTGGTACACAACTCCGTCTTGGTGAAGTCAAATTTT
CAATGATGTATAAAGACACAGACGAGAAGCTCAAATTCATATTGAAATCT
GTTTCAGTTTTTCTCAAACCCAGTCCTTCAGTTGTAGGTTGTAATTGGGT
TTGTGAGACAAACACAGTGCTCGAGGTATGACATAGTCTTGTAATTTGAC
ATTTAGATTTTCATCATAAATTGCGGTTGATCCTACTTCTTTTAATTTCA
AAACAATTAAAAAAAAAGGTTATTTACGACGTTTCTGTGTCATCCTACCA
CTATCAGCATCAGTTATTTCTTTAAATTTTTTTTTTGAAGTTTATTTTTC
ATCCCCAAGAAGAAAGTACACTTGTAGATATCGTATCCAAAGGTTCTAGT
CTTTGTTCCTGAATTCAGTGCCTTGAATTTTTACATATAATTCGGTTATA
ACGTCAGATGAACTGGAAAATCGATTGTTTTAGTGGGAAGCAGACAAACA
ATTCTCATCCAATTATTACTGGTCAAAGTCATGAATAAAGCTAAAGGAAT
CTATGATAACCATCTTTATTAATTTTAAAGGTTTTAAATTCCAAAAAGAA
GCCAATCGAAGTCAGTAACGGTCAAGAACTTCTTGTTGATTTCAAAAAGA
CTGACGTCACTGACCATACATTACGTCTCACCGTTTACGACAATCGACGT
AAGCACGTAAAGAACCCCGTCGGTCACGTGATTTTTCCGTTACGTGATGC
AAGAAACCTGGGTAAAATGAACAGTTATTCGAAGAAACTAACCTTTTATT
CTCAGGTGAGTTGACGTAGTTTCTCAAAACTGAATTAGGTTTAAAGCAAC
AGTTTTTNACCTTTTATTCTCAGGTGAGTTGACGTAGTTTCTCAAAACTG
AATTAAGTTTAAAGCAACAGTTTTTTCAGATCCAAATTAGGATGCTGTTC
CCAAAAACTTCTTAGGACGGATTGTAAGATTTGACATCGAATTTGCCTTA
AAAACTCTATAGTGATGTCAAAACGCTGGTACTACTTATTATTACCTTTC
CTTTCCTTTTCTGCTCTGTTCATTTATGCTGTGGTGGATGTATAAATGGA
CTTTAATTTCAAAAGGTTGCAAAGAATTTCAGAGCAGTCCGTTTTACCTT
CGACATTTGTCGTGATTTAGGGTTACTATATTATTATACATCGTATAAAG
GGCTAGGTGTAACTTCATTCTTATTCTTCTCCTTCGTCTAGCCTGCAGGA
TTTAACAGAGGAAACGTAAACATCGCACTGTCGTGGGGTATATCAGCTCA
AAGGCTGGATGTGAAAATTGGTGACGTAACAAACTTAAGATGTCCAGCTT
ATGGTGTCAACGGAAAAGGTAGAGACTTATTAAAGATATTTGTTAAAAGA
CTTCACTAAAAAGTAATTTTGCGTCAAACTACTATGTACTTTCAGGAAGA
GATACAAACTGTTCGAACATGCTCGGTGGAAATCCTTCCCACAGTGGGGA
TGAAAATTTCTTTTGAAATCACGATGGGGATAGAAATTTCATTGTCCCAG
GTCAAAAAGGAGTGCAATTTTTTATAGTAAATTTACAAATATGGATGATG
GCCCCGATGATACACTATGATAGTCAATTTCTAAGCCAGGCTTGTAGAGC
ATATCTCCCACCAGGGACGAAATTTAGGCCAAATTTCTTAGTTGGGCGGG
GAGGGGGGTGTTTCCCACCGGGTCTGTGATACGGGTGTGAAAATTATTTG
ATTATCTTAACTAACCATTTTATTCTTTACTTTCTTTAGAATTCTTCATC
AAGACGATCGTATTCATATTGGATAACAAATACAAGTCATACAAAACACC
TCTACAACGCGCCACACCTGAACTAACATTCAAGGAAAAATTCACTATCC
CTCTCACATCTCCACAACTCAAAGACTCCACAATTACATTCCAATTATAT
TTAAAACATTATAATAAAAAGAAGATTGGACATAAAGTGTTGGTTGGCAA
AACAGTGATTGGACCTTACATGAGACATGGGGATCGTTCACTTTCCCAAT
GGGAAAAAATGATTACTAATCCATTGGAAGAGGTATCTGAACAACACATT
TTATTTTTATGATGATTTCTGTAAACGCTGTTAATTGGTAGACACTACTT
CGTCTTACATATAGCTGCCATAAAAAAGTTTCTCCACAATATTACTGAGG
CAGAGGTGTGAGTAACCTCAGAATCAAGGAGGAGCTATAGATTTCCTAAA
TGAGTTCGTTAATATGATAAAACAACAAAAGATTAACAAAGAGGTCGCCA
TTATCACCATTAATTCTATATTATATGTTTAATTATTTTCTAGATGTTAT
TGTAAATAATTTTTTCAAATGATTCAACTTTTAAGTTTCAAATTTTTGTT
GACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004030XLOC_004030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007185-exon-sc0000074-1575043694:173158..173319TCONS_00007185-exon-sc0000074-1575043694:173158..173319Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1575043694:172733..172793TCONS_00007185-exon-sc0000074-1575043694:172733..172793Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1575043694:171836..171910TCONS_00007185-exon-sc0000074-1575043694:171836..171910Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1575043694:171287..171420TCONS_00007185-exon-sc0000074-1575043694:171287..171420Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1575043694:170595..170759TCONS_00007185-exon-sc0000074-1575043694:170595..170759Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1575043694:169965..170189TCONS_00007185-exon-sc0000074-1575043694:169965..170189Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1575043694:169402..169528TCONS_00007185-exon-sc0000074-1575043694:169402..169528Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1575043694:168364..168980TCONS_00007185-exon-sc0000074-1575043694:168364..168980Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1510915933:173158..173319TCONS_00007185-exon-sc0000074-1510915933:173158..173319Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1510915933:172733..172793TCONS_00007185-exon-sc0000074-1510915933:172733..172793Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1510915933:171836..171910TCONS_00007185-exon-sc0000074-1510915933:171836..171910Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1510915933:171287..171420TCONS_00007185-exon-sc0000074-1510915933:171287..171420Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1510915933:170595..170759TCONS_00007185-exon-sc0000074-1510915933:170595..170759Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1510915933:169965..170189TCONS_00007185-exon-sc0000074-1510915933:169965..170189Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1510915933:169402..169528TCONS_00007185-exon-sc0000074-1510915933:169402..169528Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1510915933:168364..168980TCONS_00007185-exon-sc0000074-1510915933:168364..168980Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1491911889:173158..173319TCONS_00007185-exon-sc0000074-1491911889:173158..173319Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1491911889:172733..172793TCONS_00007185-exon-sc0000074-1491911889:172733..172793Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1491911889:171836..171910TCONS_00007185-exon-sc0000074-1491911889:171836..171910Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1491911889:171287..171420TCONS_00007185-exon-sc0000074-1491911889:171287..171420Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1491911889:170595..170759TCONS_00007185-exon-sc0000074-1491911889:170595..170759Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1491911889:169965..170189TCONS_00007185-exon-sc0000074-1491911889:169965..170189Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1491911889:169402..169528TCONS_00007185-exon-sc0000074-1491911889:169402..169528Clytia hemisphaericaexon
TCONS_00007185-exon-sc0000074-1491911889:168364..168980TCONS_00007185-exon-sc0000074-1491911889:168364..168980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:168364..173319 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.7742	1.73633	9.44926	9.94217	5.49649	3.21488	1.67655	6.66166	1.52718	0	0	0.133109	0.388476	0.781198	2.97961	7.43102	2.65241	1.64746	0.950192	1.7625	3.05876	1.53973	7.09821	7.57646	0.715947	4.60452e-10
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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