TCONS_00007157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007157
Unique NameTCONS_00007157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length618

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007157 ID=TCONS_00007157|Name=TCONS_00007157|organism=Clytia hemisphaerica|type=transcript|length=618bp
TAGCTGTATTACTAAAATAGTACTCATTGAATGCAGTCACTCTCGTGTCT
GTTCTTAACAAGATGAAGTTGATTTTTATACTTGGAGTATGTCTTCTCAT
GCAAGGTTGCCAACTGTCGAAAGCAACAGAATACGCTGCTTATGAAAATG
AGGATCTGGATCACAATGGCATGGCAAGTCACCAAAACGAGAACGCAATG
GATCACATAGATGATGCAATTGACAacaatgaagaagaagatgatgatga
ttttgaagATCAAAATAATGGACCAGtCGAAGACAAAGCAGACATGGGAA
AAAAGGGAGAAGACATcattgatgaaaatgatgaagaagatgaagaagaa
gaagaacattCAAGAGATGCAAACCCTTGGGAAAGTAGAAGACGTTCTTT
CAGTAACTGGAGGAGAAGAAGATACCACAGTTTGAGACGTCGATACCACA
ATTTGAGACGTCGATCGAAAAGCAACTGGCGAAGGCGAAGTATCTCAACA
TCTCCATCGCGAAGACGGACATTACGAAGACGGACATTATGAAGACGGTG
GAGACAAACTGCAAAGAAAATTGGAGCATGAATTATAGTTGCTGCAGGTA
TAATAGTTAAGAATTGGG
Run BLAST on NCBI

transcript from alignment at sc0000074:412476..413977+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007157 ID=TCONS_00007157|Name=TCONS_00007157|organism=Clytia hemisphaerica|type=transcript|length=1502bp|location=Sequence derived from alignment at sc0000074:412476..413977+ (Clytia hemisphaerica)
TAGCTGTATTACTAAAATAGTACTCATTGAATGCAGTCACTCTCGTGTCT
GTTCTTAACAAGATGAAGTTGATTTTTATACTTGGAGTATGTCTTCTCAT
GCAAGGTAAGTGAGCTTTGAGCACATAGAGTTTTGCTTTGTGGTGGGCTA
GTCGAAACTGTGGAGACAAGTTAAAAAGGTAGTATTAGGCACCCTGTCTC
TAGGGTTTGTTCAAtagtaataatgataataaaagCTAGCTGTTGAGTAA
AAAAAGCTGCtcaatttacttttaaaatagtAACGATGTAGTGGAAGAAA
AATGGTTTTCTTTTTCTGGGCCGGGAAGTTTGgttgttttcaaaattgaa
caaaatcttATACTTTCCTTTCTCTACAGGTTGCCAACTGTCGAAAGCAA
CAGAATACGCTGCTTATGAAAATGAGGATCTGGATCACAATGGCATGGCA
AGTCACCAAAACGAGAACGCAATGGATCACATAGATGATGCAATTGACAa
caatgaagaagaagatgatgatgattttgaagATCAAAATAATGGACCAG
GTTTGTAAAATAATCCATCATTTATGTAATCATTTTATTAGCCAGTAAAG
GAACTTAAAATTTCGCGAACTTTTTCTGTAACCTGGTTTTTAGGGAAATA
TATAATCCCGCTCATTTTAAAGACGAAAGCTATTTATCAATATCGAATTT
TCAATAGAtttgtttcttttaaaataaaCTCTTGTGATCGTCCTCGAAAG
TTTATTATTTTGGGaatattaaagattttttcaataatcaataatcaaaa
tattaaatattaaaataattcaaaaaaaaattgtacctgTTTGACGCTGA
GTGACTGAGTGAgcctttttacgttttagtCGAAGACAAAGCAGACATGG
GAAAAAAGGGAGAAGACATcattgatgaaaatgatgaagaagatgaagaa
gaagaagaacattCAAGAGATGCAAACCCTTGGGAAAGTAGAAGACGTTC
TTTCAGGTACGCtttattgaaaaatcaaaatataatagccgcattctttt
tcaccgtccaacacTTTATTGAAAGATAGATAGAGTCAATATTTTAGGTT
GATTGTTCAGTAATCTAGCTAATTTTCCAGTAATCTAGGTAGCTTTCTAT
TTCCACGTAGTCGACggcgtttttttttgtttctgttcCGTCTGAATAAG
TTGTCTTTCATGCTAGACTACAATCCACACATTAAAAGTTGATCACAAAC
TTTCTAGTAACTGGAGGAGAAGAAGATACCACAGTTTGAGACGTCGATAC
CACAATTTGAGACGTCGATCGAAAAGCAACTGGCGAAGGCGAAGTATCTC
AACATCTCCATCGCGAAGACGGACATTACGAAGACGGACATTACGAAGAC
GGACATTACGAAGACGGACATTATGAAGACGGTGGAGACAAACTGCAAAG
AAAATTGGAGCATGAATTATAGTTGCTGCAGGTATAATAGTTAAGAATTG
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004012XLOC_004012Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007157-exon-sc0000074-1491911889:412476..412580TCONS_00007157-exon-sc0000074-1491911889:412476..412580Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1510915933:412476..412580TCONS_00007157-exon-sc0000074-1510915933:412476..412580Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1575043694:412476..412580TCONS_00007157-exon-sc0000074-1575043694:412476..412580Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1491911889:412855..413025TCONS_00007157-exon-sc0000074-1491911889:412855..413025Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1510915933:412855..413025TCONS_00007157-exon-sc0000074-1510915933:412855..413025Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1575043694:412855..413025TCONS_00007157-exon-sc0000074-1575043694:412855..413025Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1491911889:413355..413481TCONS_00007157-exon-sc0000074-1491911889:413355..413481Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1510915933:413355..413481TCONS_00007157-exon-sc0000074-1510915933:413355..413481Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1575043694:413355..413481TCONS_00007157-exon-sc0000074-1575043694:413355..413481Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1491911889:413733..413849TCONS_00007157-exon-sc0000074-1491911889:413733..413849Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1510915933:413733..413849TCONS_00007157-exon-sc0000074-1510915933:413733..413849Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1575043694:413733..413849TCONS_00007157-exon-sc0000074-1575043694:413733..413849Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1491911889:413880..413977TCONS_00007157-exon-sc0000074-1491911889:413880..413977Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1510915933:413880..413977TCONS_00007157-exon-sc0000074-1510915933:413880..413977Clytia hemisphaericaexon
TCONS_00007157-exon-sc0000074-1575043694:413880..413977TCONS_00007157-exon-sc0000074-1575043694:413880..413977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:412476..413977 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.7128	71.7762	33.8731	26.2919	909.719	606.44	357.899	292.806	415.215	562.289	529.102	268.443	1.51598	3.09122	0.258105	0	0.214576	0	1.71445	0.385435	0.115314	0	7.416	8.80944	0	0	0	0.888342	2.67058	3.89621
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top