XLOC_004012 (gene) - C. hemisphaerica

Overview
NameXLOC_004012
Unique NameXLOC_004012
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000074:404870..414892+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004012 ID=XLOC_004012|Name=XLOC_004012|organism=Clytia hemisphaerica|type=gene|length=10023bp|location=Sequence derived from alignment at sc0000074:404870..414892+ (Clytia hemisphaerica)
TATAACCGCAAATAAAAAGTtcgatgaaaataatgaaagattGGCTTAAG
ATTATATTCCTAGTTTATAACGGGCTTGAAGATATGATGACATACGTAAC
AATCAATAGGAAGCAAAATGTTTCAGATTGTTTAAAACATTTCAGTAGGG
AAAATTCCCTTTATGGTTGACCTCTCTCAACCTTTCAGCAATACTCTGAC
TATAAAAGGCGAACTGGAAGCGTTAAGATGTCACAACAAATATTGTACAC
ATTCGACAGCACAAGTAGAAAAGATGAAGTTGATTTTTATACTTGGAGTA
TGTCTTCTCATGCAAGGTAAGTGCTTATATGTTCCTTTACCTACTAAACA
GTAACATTGTTTTCAGTCACGTGGTGGGTTAACCAAAACTGAGGAGACAA
GTTGAAGAAAATTAGTATTATGCACCCTGTCTATAGGGTATGTTTAAAAA
CTTGGCGAGGGAAGCGATTGCAAAGTTTCTTTAAATAATCTCAACCGGCT
GTCAACGCGAGAGGTTACTTTGTTTCCAAgctcttatttcaaaattgaac
CAAGTCAAGAGAAATACTTTCATTTTCCTCTACAGGTTGCCAACTGTCGA
AAGCAACAGAAGGCGCTGCTACGAACAAAACAACAACTGCTCATGAAAAT
GAGGACCCTGATCACGATGGCATGACAAGTCACCAAAACGAGAATGTAAT
GGATCACATAGGTGATGAAATTGACGACATTGATGATGAaaaagatgatg
atgattttgaagATCAAAATAATGGATCAGGTTTGTAAAATAATCCATCA
TTTATGTAATCATTTTATTACCCAGTAAAGGAACTTAACATTTTTCGCGA
ACTTTTTCTGTAACCTGGTTTTTAGGGAGATATATAGTCCCGCTCATTTT
AAAGATGAAAGCTATTTATCAAAGTCGGATTTTCAatagatttgtttctt
ataaaataaactcTTGTGATTGTCCTCGAAAGTTTATTATTTtgtgaaat
attaaaaaaataaaagattcaaaaaaaatttgtacctGTTTGACGCTGAG
TGAATCTTTTTACGTTTTAGTCGAAGACAAAGCAGACATGGAAAAAACGG
GAGAAGATATCATTGATGAAAAttatgatgaagatgaagaagaagagcaT
CCAAGAGAAAGACGAGATGCAAGCCCTTGGGGAAGTAGAAGACGATTTTT
CAGGTACGCTTTATAGAAAGATAGATAGAGTCAATATTTTAGGTTGATGG
TTCAGTAATCTAGGTAAGTTTCTATTTCCACGTAGTCGACGGCATCTTTT
TTATTATGCTTTGTTTCTGCTCCGTCGAAATAAGTTGTCTTGCTTGCATG
TCACTACAACTCACACATTAAAAATTGATCACAAACTCTCTAGTAACTGG
AGGAGAAGAACAATCCACAATTTGAGACGTCGATCGATCAGCAACTGGCG
AAGACGAAGTATCTCAACATCCCGATGGCGAAGACGGACAATTACTACTC
AACGAAGACGCTGGAGACAAACTGCAAAGAAAATTGGAGCAGGAATCATA
GTTGCTGCAGGTATAATAGTTAATAATTGGGAAAATGGGAAATTTACAGC
TTTGCTAGAATCTGACATTAAAGGAAGGAATAGTTCGATTTTGAAAAGGT
TTGGAATGCTTTCTTCTTAACTTTCACACTGACAAAATGTCATTGTGCTT
CACAGCAACGATAAATTCTTTATCAAATGCCTGACATGACTTTTTATTAG
AAACTGGTTCAAAAAGTtgctgattatgacgtcataagttGCACCCTAGT
GCGAGTTCTTGCTCCCTGGAAGATCGAATCAGTTAAAACGAGAAAAAGTT
GGATTCAATAGATTTATATGTACCAAATCTGCTTCGCAGACCGACACACG
GCAagctgaaaatataaaaatgccTGTACAGGTGGTATAGGTTAATAGAT
TTAAAAccttacttttttattttattctaggCGGAATCAAAAAGATTCGA
AACAAGATTATCAAAGAATTAATAAAACCCAAATGTGCAGGATGTGCAGG
GATTTGTGAGAAACCGGCGCCTTCAGGTTGTCAATGTGTCCAAGATCAAG
CGTGCATCAAAAGGATGTATGGATGACTTTTTATCAGTAAAGAATAGCCA
ACTGGTagcaaataattattttttaattcagaGAATTTTGTATCTCCTTt
tattttatatgaaaaaataaaatttgaaggcAAAAATAATGCAACATTGT
AAAATTCTTCCCTGAGGGAGGTTCTAGGTTTGCGACGAGATGTTGGGGAT
GCCCGgcccaaaagttcaaaaatcgaCCTGGAATAGATTTAGAAATTAAG
gccccttttttaaaatttcacgaCCCTTTGAGTGACTTTTCTTCCCgata
tttggccaaaattttcaaaatttaatccaAACTGCGAGAAGTAATGGCTC
TGTGCGggatttgattttttatatcttCAAATTTTAGGATCCTTTTCAGT
ACTCAATTGTTATGGTCATGTAAAAAACTTTTGAGGGTGCCAAAAAGGAG
CTTTTATGGCTCGGGTACATCCGAGAGTCATTTTGCCCCGCCCCCGAGAT
ATAATCACACCAAAACACAATAGCTTTATATTGAAATGGTGATGAAAAAA
GAGATAATCAATTATCACGATGGTTAATGCTTTGGGGATAAAACAACACA
TTAGTGAAAAATATGTTACTTCCTTAACATTTTCTTGCAGAGTCGTTTCG
GACAACTCTCTTACGGTATAAATTTAATAACGATGCGGGGCACTACacaa
tccaaatatggttaagaGATGAGACACCCGGGGGAGGGCTAAAGTCATGC
TTTGAAGAGATtcctttttttaatatttgatcGTGCTTTTAAGCCAGCTT
TAACATcaaaaggacttttagtgcgttcagctacagcttaaccggcgtgc
gacgccgggtaccgggtAGATTCGATTTAATTAAAGTaatatttccataa
ttaatagtttagtaattactgttacagtatatggccccaaaAACGGAGAC
GGCTCCTAAAACGTAGGTCGTCTTTAAAATGAGGATAACGATCAATTGGA
TCAATATTCcatgatttcaatttttagggTGGTTAAATCAATTTATGAAT
TTGAAACTTATAGAATGTATTGGTTGAAACAGTCAAAATGTGAAGAGTCT
ACTCTTTTGTGCCTAATTGTAGGGGGAGGGTTAAAAAGCAGGCGTTGGGT
CATTATAAAATGCTATGGGGCGATTTTAATGAATTTCGTTGAAATGGGAG
GACACAAAAACGCAAAAGATTAACAAATGCCTGAAACTAAAGTCTTAATT
AAATCAATACAACATAATAGAAATAGAGTATAATCATTAGATTGGAATAT
GGTCATAAATGTGAGACATTGTActcaatttcaaagttttcaacaGTGAC
CAAGCTCTGTGACATTTCTTCACCTGTTCCCTTTCCAAAGAACTCCTCCA
AAATGTTTGGGAAAAAAGTGAGTGAAGTCAACTTATCTTTAATTTCAATC
TGAGCATCTATAGAGTACACAAGTTGACATTTTTTTCAAGCTCAAATTTA
GAGGGCAATGATCACAACGAACACTAGCTGCACCATTTTTAGGTTCTGGC
AACTTTTTCTTGCAAACTGTGTTACGACATTGGCGATATTCGTTGAGTTT
GGTTCACATAATATCTGGGcaacaaatttttgatatttcagTCTTCACTT
TATCCCAAGTTATCTTAAGTTTGGTGTCTGCCATTGTAACTTCAGTATCA
TAAAGTGTTTGTAATTTTGCTTGTCCTTTGTGATGGATGAGAGTAAGCTT
TAAAAAATTATAGGGTTTACTTACGTGTTCAAGTTCATTGATTAATTCGT
CTCCCCATACTACAAGTGGCAAGGAATTTTATTGAGCATCTGAAAATTTA
GCATCTCTAACACTTTCCAGCTTTTCTCTTTGGATGTCTTACCATGCTTT
GTTTCTGCTGCAAAGGAAGTGTTGTTATGTTGCTGTAATAATAAAGATTA
ATTATAAAGAATTTCGTTCGCGCCACGCAGAAGAGTCGGTCACTTTCGAT
CACTCTTATTCCCTTGCGGCACGAACACACTGCGGCTGATCAAGGCCGCC
TCAAGGGAACGCTTTACCTTTAGCATTATATTACAGGCTGAATGTACACA
ACTTGTTAAGATATTATGGATCACAAAATTACCAAAACAAATTTGTGACA
AGCTTGACATGCGGTGCTCAAATTAAAGTTTTGTGAGGGACATTAGTTGG
ATACTGGATGATGTGATATTTCACAATAGGCGCAAGAAAATTTTCTCACA
GGGAAAAGGAAAACTGCATAAAATATAAGGACAAAATTATGATTCATATA
TTCCTTTCAAGTTTCAATTATTTTCCGTATTTGCacctaaatttcaaaaa
acctttttaattttatcCCTTCTCCGAATGTCACTTCCTAGGGAGGGTAC
CCATCTTTCCATCTTTCCATATTCACACATCCACAAGCAGCATTAGGATA
ACGATCGCAAATTTCCCGAAATATCACACCATTCTCTATCCCTTTGGGAG
CAATCCTGAAGTGATGGTCCATGATgggatattttataaaaaaacaaatt
ataggGTTTACGTGTTCAAGTTCATTGATTAATTCGTCTCCCCATACTAC
AGGTGGCAAGGAGTTTTATTGAGCATCTGAAAATTTAGCATCTCTAACAC
TTTTTGACTTAGTTGACACTTTAATAGTAGTATGTAGTATATGTAGtatc
ttgaaaattctgaataTCTTTAGTTTTAATGAGCCAATGATTATCTGTAT
TTTTCGTTTCTAAGGTTAGGATTTTCACAGATTTAAAACCGAAGTAATAA
TATATACCTTTTCAAATATCTCAGCTTTTCTAACATTCTTCCCTGCTCCG
AAGCTCGTATCACTACCTTTACACATATCAATCACCTTTTtgtttatctg
gcacccagatggtgaaattttcatccgacacactaaagctctgaaggtcg
ggaaaattttcaacatctggaaggtttacattacggaattttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcagttca
ttcgtttttgaaatcgtaaaactttttgttcactgcacgcattctttgtt
tatgcttccttaataaaatcttttgttttaagggaagcctctacgggcgc
gttcacactggaaagtttacctaattaaatctatcaaagtttaacaaaga
gatttatgatggatgaatacactggtttattacagttctttgtaggttta
cgagatctattataacacagtaattgattttgcttaaggcttctcattgg
ttgattttttattgaaagtttcgatttcacctgtgattggttgatattgg
tatccatacatcacttgaaatccgcaaacatatttgttctaatggtttta
ctcattaactgcattcatccattcatcttacacatcaacaacaccgtttg
cactatttctaattttttcctcagttcattcgtttttgaaatcgtaaaac
tttttgttcactgcACGCATTCTTNTAGAAGCAATGCTAACGTTTCAATT
CTAGCAACCATTCTGCAGTTTGAAGATGTTGTGTACAATACTATCAACTG
TTTGCGATCTCCTCAAAAAGGAAGCCTCACTCAAACACtcaaaaggggat
tccttttaGCTCCTCTATtctaaaagatgaaatagcAATTAAGTCGTTGC
ATTTCTTAATTCCCTTATCAATTTAGTACTACTTaagccttaaacttaaa
ctttcatgtCGGAACACGACCTATCTGTGGATCTTGTTATTCATGCTAAT
TACTTTGTTTAGCATTTTAGAGCTGATGTCATCTCCCTTAGGGAATTTGC
TCCACACGCCTTATATAATTACCATTATTGCTTAGGAGTGTGTTATATTT
ATCCATTAGCTGTATTACTAAAATAGTACTCATTGAATGCAGTCACTCTC
GTGTCTGTTCTTAACAAGATGAAGTTGATTTTTATACTTGGAGTATGTCT
TCTCATGCAAGGTAAGTGAGCTTTGAGCACATAGAGTTTTGCTTTGTGGT
GGGCTAGTCGAAACTGTGGAGACAAGTTAAAAAGGTAGTATTAGGCACCC
TGTCTCTAGGGTTTGTTCAAtagtaataatgataataaaagCTAGCTGTT
GAGTAAAAAAAGCTGCtcaatttacttttaaaatagtAACGATGTAGTGG
AAGAAAAATGGTTTTCTTTTTCTGGGCCGGGAAGTTTGgttgttttcaaa
attgaacaaaatcttATACTTTCCTTTCTCTACAGGTTGCCAACTGTCGA
AAGCAACAGAATACGCTGCTTATGAAAATGAGGATCTGGATCACAATGGC
ATGGCAAGTCACCAAAACGAGAACGCAATGGATCACATAGATGATGCAAT
TGACAacaatgaagaagaagatgatgatgattttgaagATCAAAATAATG
GACCAGGTTTGTAAAATAATCCATCATTTATGTAATCATTTTATTAGCCA
GTAAAGGAACTTAAAATTTCGCGAACTTTTTCTGTAACCTGGTTTTTAGG
GAAATATATAATCCCGCTCATTTTAAAGACGAAAGCTATTTATCAATATC
GAATTTTCAATAGAtttgtttcttttaaaataaaCTCTTGTGATCGTCCT
CGAAAGTTTATTATTTTGGGaatattaaagattttttcaataatcaataa
tcaaaatattaaatattaaaataattcaaaaaaaaattgtacctgTTTGA
CGCTGAGTGACTGAGTGAgcctttttacgttttagtCGAAGACAAAGCAG
ACATGGGAAAAAAGGGAGAAGACATcattgatgaaaatgatgaagaagat
gaagaagaagaagaacattCAAGAGATGCAAACCCTTGGGAAAGTAGAAG
ACGTTCTTTCAGGTACGCtttattgaaaaatcaaaatataatagccgcat
tctttttcaccgtccaacacTTTATTGAAAGATAGATAGAGTCAATATTT
TAGGTTGATTGTTCAGTAATCTAGCTAATTTTCCAGTAATCTAGGTAGCT
TTCTATTTCCACGTAGTCGACggcgtttttttttgtttctgttcCGTCTG
AATAAGTTGTCTTTCATGCTAGACTACAATCCACACATTAAAAGTTGATC
ACAAACTTTCTAGTAACTGGAGGAGAAGAAGATACCACAGTTTGAGACGT
CGATACCACAATTTGAGACGTCGATCGAAAAGCAACTGGCGAAGGCGAAG
TATCTCAACATCTCCATCGCGAAGACGGACATTACGAAGACGGACATTAC
GAAGACGGACATTACGAAGACGGACATTATGAAGACGGTGGAGACAAACT
GCAAAGAAAATTGGAGCATGAATTATAGTTGCTGCAGGTATAATAGTTAA
GAATTGGGGAAAGGGGAAATTTGCAGCTTAGCTAGAATCTGACATTAAAG
GAAGGAATAGTTCGATTTTGAAAAGgttctcgggtaagttatggcatgtc
ttaaaattaccataatttttaaatcgcattagccgacagaaaatgactga
acatgaagggtactgtgtagtttctaacctgatgtgtaacctaattgttt
tttcgccgGTTTTCAcgaaaaactgcaaaaactgattataaCGTCATAAT
AactaaaaatagaatttctcaAGGATTATTTATCCAATCGTCTTCAAACt
tttaccaaagatgtatctcactaaagtcgatcatttgaaaaagagttttt
tttgaaattctgattacgtcagcaaaaaataaaatttttcccttttttcc
ttATTTCTGCTGATGTCATGACATAACTTACCTTACGtcagacatgccat
aacttacctgagtttGAAATGCTTTCTTCTTAGCTTCGTCAAATTGACAA
AATGCCAATGTGTTTCACAACAACGATAAATTCTTTATCAAATGCCTGAC
ATGACTTTTTATTAGAAACTGGTTCAAAAAGTTGCACCCTAGTGCGAGTT
CTTGGTCCCTGGAAGATCGAATCGGTTAAAACGAGAAAAAGTTGGATTCA
ATAGATTTATAGCCTGTACCAAATCTGCTTCGCAGAGGGACACACAGCAa
gctgaaaatataaaaatgccTGTGGGTGGGGTGGTACAGATTAATAGATT
TAAAAccttactttttatttcattttagatCAGGCGTGCATCAAAAGGAT
GTATGGATGACTTTTAATCAGTAAAGAATAGCCAACTGGTAGCAAATAAT
TCTTTTCTAATTCAGAGAATTTTGTATCACCTTttattttatatgaagaa
ataaaatttgaagGCAAAAATAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007154TCONS_00007154Clytia hemisphaericatranscript
TCONS_00007155TCONS_00007155Clytia hemisphaericatranscript
TCONS_00007156TCONS_00007156Clytia hemisphaericatranscript
TCONS_00007157TCONS_00007157Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007154-proteinTCONS_00007154-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:404870..414892 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
120.66	130.29	68.71	56.04	1910.43	1430.41	677.11	634.62	562.16	755.94	748.37	380.3	2.97	5.23	1.5	2.86	17.94	7.95	4.88	5.54	43.48	48.95	141.84	485.26	206.87	558.85	61.96	96.29	370.52	237.26