TCONS_00007137 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007137
Unique Name	TCONS_00007137
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2762

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000074:73119..75880+

transcript sequence

>TCONS_00007137 ID=TCONS_00007137|Name=TCONS_00007137|organism=Clytia hemisphaerica|type=transcript|length=2762bp
TGGAATTTTTCACCTTCTTCTGGACCATGATTGCTGTCATTGTGGTGATG
ATGATGAGGCTCCTCGTGATGATCTTCTACGTGCTCAGGCTCAGCATGTG
CATGCTCTTCATGATGAAAGTCGTTCTTCTCAGCCTCTTCATGAAGTCCA
TGCTCCTGTTCATGGTCATTAGGAGTTGAAACCAGTTTCTCATAATTAAT
CTTTGGTTCTTCAGCATGGTGATCCATATGATGATCTTCGTGGAAATCAT
CTCCATGATCGAATGTTCTGTTACGTTTAGATGATAATCCTAATCGATGT
TTTTGCTTcttatgtttgtttttcttcgaaTAATGTTTCTTTTTACCATG
GTATTTCTTTCGTTTGTTTTTACTGTGTTTCTGCACGTGTTTTGATATCT
TTTTATGCCACTTTTTATGCTTCttttgttgataatttttagcttttttg
gtGGTATGCTTCTTACTTGAATTGTGTTTGCTCCAGTGCTTCTTCTTATG
ATGTTTCTTTCCAATCTTCTTTAGATGTTTATTTTGATGTATCTTTCTAC
TCTTAGATTTTTGGATCAGCTTTGTAATTTTCCTCGgtttatgtttttta
ttttgcctCGACTTCCCTTTTCTTTTTCGCGatgaattatttttgaaatc
tttctttcCATGTCCCTTTTTCAAATTGAGCTTTTTCTTAATGTGTTTTG
ATGTCGACTTAGGctttacaattttatttttcttgtctaATCCCCAAGAC
GTATCAGCAAGTTTGTAAGTAATATCATCAAATCTTTTCTGAGCATCTTT
ATACTCTTTGTTTGGATCTTCATCTGCAAACATATTCTTGATATTATTTT
CAACGCCATAAATGAGGTTGTTTGTAATCTTGTCTTGTTTTTCAATCAAC
TGGCCATGTTTGATATCACCGCTTTCGTCGACACTATCTTCATCAgtttc
attttcagtttgatCTTCACTTTCATTATTTTGTTCTTCTGATACAACAT
TTTTCTTTACCGTTTGAGCTACATCTAAATTATTAACAACCTTCTGTTTC
TTTCCTAATCCCCAACTGGTGCCAGCTAATTTTTCCATCTTATGTACAAA
GAGATCTTCAGCTTTTTCATCATTACCAGTATTATGCGTGACATCATCAA
ACAGACCTTGCATGTCATTTTCTTCATGTTCAATATTATGATTCATTTTA
TCGTGTTCCTCCTGTACATATCCTTCAGGTAACATATTATCAGTGCTATT
GAATCGGCTTTCTTCCTCATTTTCACGCTTCTTTCTTCCCTGAATTTGAC
TTTTTCTTGTTAATCCCCAAGTTGTATCAGCCAACTTATCAGTTATATCT
TTGAATCGTTTCTGAGCATCTTTGTATTCCTTGTTTGGGTCTTCTTCAGC
AAACATCCCTTTTATTGTATTTTCGACCCCGTAAATGAAATTATTTGTTA
TTTTATCTTGTTTTGCAACCAATTGATTGTGCTCTGTATCTTCTTCTTCT
GAAGAATCATTGAAGTCATTTTCCTGATcttcgtttttattttcattttc
ctctGTACCAGCGTTATCAATGTCACGTTTTACTCTTCTttttatattac
ttttctttgtCAATCCCCAAGTCGTATCAGCGAGTTTGTTGGTAATATCA
TCAAATCTTTTCTGAGCATCTTTATACTCTTTATTTGGGTCTACTTCAGC
AAACATATtcttgattttattttcaacaccATAAATGAGATTGTTTGTAA
TCTGGTCTTGCTTTTGTACTATTGATTGATCTTTTTCGTCTGTCTCTAGC
TCTTCACTATCTTCGTTGTCCTCTCCATTCTCTTCTACATTGTCATCTTG
CTCTGGAATACTGTGCTTCTTAGTTTCTTTCAAAGACATATGGTTCAGTG
GCGTAGCAGTTGATAGCTCAGTCTTTTTAATATGATTTCCTCCTCGTTTT
GATAAACCCCAAGGTGTATTTGTCAATTTCATCAGCCTGTCAACGAATGT
GTTTTCAGCGTACCGTCCATCATTTTTACCATCAAGTATGTTATCATAAA
GACTAAGAACAGCTTGCTTTTCATTCGAGAAATGCTTATCCATAGCATTA
CGCTCCATTTCGGCGTAATCAGCTGAAACAATATCTTTGCTGGCTACATC
AGACAAGTTTTTCTCGATATTCTGTTTTTTAGCTACAAGATTTcttttaa
ttttgctttttgTTACACTCCAGGGTCCAGCACCTGTCATTCGTGAAGCT
TGTTTCAAAAAGGCCATTTCAGGGCTTTTATGGTGACCATGTCCATGCTG
TACGTTCTTGAAAAGGTCAACAATGTTATTTGTTTGATCCATGATAGACT
GTTGAACCATCTTGCGTTCATCATCTTGATAAGACTTTGGTAACACATTA
TCAACAGTGGGAATATGTTCACCAGTATCGGAATTAGGTTTTGAATCTTC
TCCACCAACATCTATATCTTCGTGTTCATGGTGGTGACCTAAATCATCTC
TGGAGTTTTTATCAAACTCCTTTCTGAAGTCATTTCCACCATTTATCATC
TTCTGTATCTGTTTCACTGTATCTTTTTCTTTACCAGGATCCATGGTGAA
TTCGATTGGTGCAGGTCGATCAGAGCAACTGGAGCCTTTGTTTCGGTAGC
CAACCTCACTCTTTCTGCAACCAGCGCCTGGGGATTTATGAAATTCGGAT
ACATCAGCGATATGGGTTTCTTTATCTCTTTCTTTACCGTCACGTTGTTG
GAGGCCATAACC

Run BLAST on NCBI

transcript from alignment at sc0000074:73119..75880+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007137 ID=TCONS_00007137|Name=TCONS_00007137|organism=Clytia hemisphaerica|type=transcript|length=2762bp|location=Sequence derived from alignment at sc0000074:73119..75880+ (Clytia hemisphaerica)
TGGAATTTTTCACCTTCTTCTGGACCATGATTGCTGTCATTGTGGTGATG
ATGATGAGGCTCCTCGTGATGATCTTCTACGTGCTCAGGCTCAGCATGTG
CATGCTCTTCATGATGAAAGTCGTTCTTCTCAGCCTCTTCATGAAGTCCA
TGCTCCTGTTCATGGTCATTAGGAGTTGAAACCAGTTTCTCATAATTAAT
CTTTGGTTCTTCAGCATGGTGATCCATATGATGATCTTCGTGGAAATCAT
CTCCATGATCGAATGTTCTGTTACGTTTAGATGATAATCCTAATCGATGT
TTTTGCTTcttatgtttgtttttcttcgaaTAATGTTTCTTTTTACCATG
GTATTTCTTTCGTTTGTTTTTACTGTGTTTCTGCACGTGTTTTGATATCT
TTTTATGCCACTTTTTATGCTTCttttgttgataatttttagcttttttg
gtGGTATGCTTCTTACTTGAATTGTGTTTGCTCCAGTGCTTCTTCTTATG
ATGTTTCTTTCCAATCTTCTTTAGATGTTTATTTTGATGTATCTTTCTAC
TCTTAGATTTTTGGATCAGCTTTGTAATTTTCCTCGgtttatgtttttta
ttttgcctCGACTTCCCTTTTCTTTTTCGCGatgaattatttttgaaatc
tttctttcCATGTCCCTTTTTCAAATTGAGCTTTTTCTTAATGTGTTTTG
ATGTCGACTTAGGctttacaattttatttttcttgtctaATCCCCAAGAC
GTATCAGCAAGTTTGTAAGTAATATCATCAAATCTTTTCTGAGCATCTTT
ATACTCTTTGTTTGGATCTTCATCTGCAAACATATTCTTGATATTATTTT
CAACGCCATAAATGAGGTTGTTTGTAATCTTGTCTTGTTTTTCAATCAAC
TGGCCATGTTTGATATCACCGCTTTCGTCGACACTATCTTCATCAgtttc
attttcagtttgatCTTCACTTTCATTATTTTGTTCTTCTGATACAACAT
TTTTCTTTACCGTTTGAGCTACATCTAAATTATTAACAACCTTCTGTTTC
TTTCCTAATCCCCAACTGGTGCCAGCTAATTTTTCCATCTTATGTACAAA
GAGATCTTCAGCTTTTTCATCATTACCAGTATTATGCGTGACATCATCAA
ACAGACCTTGCATGTCATTTTCTTCATGTTCAATATTATGATTCATTTTA
TCGTGTTCCTCCTGTACATATCCTTCAGGTAACATATTATCAGTGCTATT
GAATCGGCTTTCTTCCTCATTTTCACGCTTCTTTCTTCCCTGAATTTGAC
TTTTTCTTGTTAATCCCCAAGTTGTATCAGCCAACTTATCAGTTATATCT
TTGAATCGTTTCTGAGCATCTTTGTATTCCTTGTTTGGGTCTTCTTCAGC
AAACATCCCTTTTATTGTATTTTCGACCCCGTAAATGAAATTATTTGTTA
TTTTATCTTGTTTTGCAACCAATTGATTGTGCTCTGTATCTTCTTCTTCT
GAAGAATCATTGAAGTCATTTTCCTGATcttcgtttttattttcattttc
ctctGTACCAGCGTTATCAATGTCACGTTTTACTCTTCTttttatattac
ttttctttgtCAATCCCCAAGTCGTATCAGCGAGTTTGTTGGTAATATCA
TCAAATCTTTTCTGAGCATCTTTATACTCTTTATTTGGGTCTACTTCAGC
AAACATATtcttgattttattttcaacaccATAAATGAGATTGTTTGTAA
TCTGGTCTTGCTTTTGTACTATTGATTGATCTTTTTCGTCTGTCTCTAGC
TCTTCACTATCTTCGTTGTCCTCTCCATTCTCTTCTACATTGTCATCTTG
CTCTGGAATACTGTGCTTCTTAGTTTCTTTCAAAGACATATGGTTCAGTG
GCGTAGCAGTTGATAGCTCAGTCTTTTTAATATGATTTCCTCCTCGTTTT
GATAAACCCCAAGGTGTATTTGTCAATTTCATCAGCCTGTCAACGAATGT
GTTTTCAGCGTACCGTCCATCATTTTTACCATCAAGTATGTTATCATAAA
GACTAAGAACAGCTTGCTTTTCATTCGAGAAATGCTTATCCATAGCATTA
CGCTCCATTTCGGCGTAATCAGCTGAAACAATATCTTTGCTGGCTACATC
AGACAAGTTTTTCTCGATATTCTGTTTTTTAGCTACAAGATTTcttttaa
ttttgctttttgTTACACTCCAGGGTCCAGCACCTGTCATTCGTGAAGCT
TGTTTCAAAAAGGCCATTTCAGGGCTTTTATGGTGACCATGTCCATGCTG
TACGTTCTTGAAAAGGTCAACAATGTTATTTGTTTGATCCATGATAGACT
GTTGAACCATCTTGCGTTCATCATCTTGATAAGACTTTGGTAACACATTA
TCAACAGTGGGAATATGTTCACCAGTATCGGAATTAGGTTTTGAATCTTC
TCCACCAACATCTATATCTTCGTGTTCATGGTGGTGACCTAAATCATCTC
TGGAGTTTTTATCAAACTCCTTTCTGAAGTCATTTCCACCATTTATCATC
TTCTGTATCTGTTTCACTGTATCTTTTTCTTTACCAGGATCCATGGTGAA
TTCGATTGGTGCAGGTCGATCAGAGCAACTGGAGCCTTTGTTTCGGTAGC
CAACCTCACTCTTTCTGCAACCAGCGCCTGGGGATTTATGAAATTCGGAT
ACATCAGCGATATGGGTTTCTTTATCTCTTTCTTTACCGTCACGTTGTTG
GAGGCCATAACC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004004	XLOC_004004	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00007137-exon-sc0000074-1491911889:73119..75880	TCONS_00007137-exon-sc0000074-1491911889:73119..75880	Clytia hemisphaerica	exon
TCONS_00007137-exon-sc0000074-1510915933:73119..75880	TCONS_00007137-exon-sc0000074-1510915933:73119..75880	Clytia hemisphaerica	exon
TCONS_00007137-exon-sc0000074-1575043694:73119..75880	TCONS_00007137-exon-sc0000074-1575043694:73119..75880	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000074	supercontig	sc0000074:73119..75880 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.574286	1.12065	0.213448	0.203071	0.329129	0.1851	1.71185	1.23799	0.830077	2.56206	1.26228	1.09355	0	0	1.21089	1.41557	0.51215	0.721986	6.07999	8.15897	0.278399	0.0594237	0.030848	0.0314293

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00007137 vs. Swiss-Prot (Human)

BLAST of TCONS_00007137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00007137 (transcript) - C. hemisphaerica