TCONS_00007119 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007119
Unique NameTCONS_00007119
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007119 ID=TCONS_00007119|Name=TCONS_00007119|organism=Clytia hemisphaerica|type=transcript|length=564bp
tcacgaaaatcgctaaaatttgtcatcgcgcaaaaaatagcgaattTTTG
CCCTATGACGCATCatgccaaaatcttgatcacgccatcacgccaaaatc
ttgatcacgccatcacgccaaaaaaatctctaatcacgccatcacgcaaa
ccgctgctGGCCTCTCTAATCCGTTCGCTCTATGCGTGCACTCTTTTGCT
GCCAACGTGCACGTTGAAACTACTCTCGAGAAAATTTCTCTTATTGCGCT
CTCCTACATAGTAGCAAAATAGAAGGCATATTTAAAGCGAATCATCCTGT
AGCAGAAGCTAGATTGTGTGGTTCGTGATATAATCCTAATCGCTTGGATC
TTAAGCTTGAAACACAGCTCTCTtgtacacccctgtatcaattATCAAAC
GTCTCTGACCCTTATAGTTCAGTTTGATTTtgtatcttattttgctgaag
tcACCTAAAAATGAACCtgagatacacgtttttttttttttaagaaacac
acttttaagaaacacgaggatcagaatgcctaaaaactaagaaacatcta
agaaacatgctgag
Run BLAST on NCBI

transcript from alignment at sc0000073:496278..496841

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007119 ID=TCONS_00007119|Name=TCONS_00007119|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0000073:496278..496841 (Clytia hemisphaerica)
ctcagcatgtttcttagatgtttcttagtttttaggcattctgatcctcg
tgtttcttaaaagtgtgtttcttaaaaaaaaaaaaacgtgtatctcaGGT
TCATTTTTAGGTgacttcagcaaaataagatacaAAATCAAACTGAACTA
TAAGGGTCAGAGACGTTTGATaattgatacaggggtgtacaAGAGAGCTG
TGTTTCAAGCTTAAGATCCAAGCGATTAGGATTATATCACGAACCACACA
ATCTAGCTTCTGCTACAGGATGATTCGCTTTAAATATGCCTTCTATTTTG
CTACTATGTAGGAGAGCGCAATAAGAGAAATTTTCTCGAGAGTAGTTTCA
ACGTGCACGTTGGCAGCAAAAGAGTGCACGCATAGAGCGAACGGATTAGA
GAGGCCagcagcggtttgcgtgatggcgtgattagagatttttttggcgt
gatggcgtgatcaagattttggcgtgatggcgtgatcaagattttggcat
GATGCGTCATAGGGCAAAaattcgctattttttgcgcgatgacaaatttt
agcgattttcgtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003987XLOC_003987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007119-exon-sc0000073-1491911889:496278..496841TCONS_00007119-exon-sc0000073-1491911889:496278..496841Clytia hemisphaericaexon
TCONS_00007119-exon-sc0000073-1510915933:496278..496841TCONS_00007119-exon-sc0000073-1510915933:496278..496841Clytia hemisphaericaexon
TCONS_00007119-exon-sc0000073-1575043694:496278..496841TCONS_00007119-exon-sc0000073-1575043694:496278..496841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:496278..496841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.593178	1.69532	1.62641	0.275503	0.23006	0.147701	0.740029	0.2188	0	0	0.1368	0.36921	0.201448	0.128426	0.340341	0.552873	0.250855	0.446885	0.420081	0.36474	0.458843	0	0.783194	0.372849	0.193895	0.433721	0.179581	0.252636	0.419055
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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