TCONS_00007073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007073
Unique NameTCONS_00007073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007073 ID=TCONS_00007073|Name=TCONS_00007073|organism=Clytia hemisphaerica|type=transcript|length=1005bp
CNTTTAGCGCAGATCCAAGAATTGGGAAAGATTTTAGGAAAGGAGCTTGA
ACAGATTACTGAACAGTTTCGTCTTGGTTTTGGTGGTTTTGTTGATAAAC
CAGTTGGACCATACACCAAAACACTCCCAGCAGAAATCGAGGGTATTTTA
GAGAAGATCGAAGTTGATAAGAAAGAATACACTTATGCATACAGAAACCA
TCTCCCACTCAATGAAGACATCAACGCATTTCGTTCAACTATAGCTGGTC
TAAACATTTCATTTAACGTGGACAGTCCTGAATGCTCATTAGAGGCTTTA
ACGCAAGTCATTACATGTCAAAGCTCTATTGGTTGGAGGAATAAGAATGA
AGCACGTCGAATTGTCATCATCACAACTGATGCTTTATTTCATTACTCTG
GTGACGGGCTTCTAGGAGGTTTCCCTAAACCAAACGACGGACAATGCCAC
ATGGTGAATAATGTTTACAACGCATGGGACAGATATGATTATCCATCTTT
ATCGCAAGTGAAAGAATTGATGCTTGACAACGATATGGTTCCCATCTTCG
CCACTACCGGTAATGAAGctttgtacaaaaaagttgCAAGTTTTATTGGT
AATGGAGCTCAAGCTGAACCATTAGCTGAAGATTCATCAAATATTGGAAC
TTTGATTAGGACAGCTTATGAGAGGATTGCCAGAACTGTCACCATTGATG
CTGATGTCCCACCCAATATCAAAACTGGATTCTCTGCTATTTGCGGACGT
GAAAAGAACCGAACCCAAGGTGCAACCTGTAACAATATTGAAATCGGAGA
AACTGTGACATTTTTTGCCAACTTGGAAGCTGAGTCATGTGACGCAGACC
AGACCGTTGAATTCAACATCAAAACAAGCTTCGATAATGTCAAAGTGAAA
TTGGAATTGATTTGTGAATGTGATTGTGGGCCAACAACGGTTGATTCAAG
TGACTGTACAGACCGTGGTAATTTGACTTGCGGAAAATGTTTCTGTGACC
GGTAA
Run BLAST on NCBI

transcript from alignment at sc0000073:452130..455280-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007073 ID=TCONS_00007073|Name=TCONS_00007073|organism=Clytia hemisphaerica|type=transcript|length=3151bp|location=Sequence derived from alignment at sc0000073:452130..455280- (Clytia hemisphaerica)
CNTTTAGCGCAGATCCAAGAATTGGGAAAGATTTTAGGTAGGTCCAAGTC
TTTTTAGTCTGTATACACTTACATGTTTTTTTCAGACTGATATGGTATGT
TTATTAACACTTTTCATCAAACAAGATCAAACTTTTCTTGTCAAGAAAGT
ATAAACTAAACTATAATTACTTACAAGCTTTAAGTAAAAAGTAGAACATA
AGCATCCTCATCTGGTGTGGCTGCAACAAAGAGAGAGGGAAACATTCTCA
TTTCTATTTGCTATAAACTTTGGTGATCTTGGTTACTTATTTTCTGAGTT
TGTGGCAACCGGGGATCAATTTCTAAGCAAATGCTTCATTGACCAAGGTT
ATAATAATACAACGCCTCAATTTATTTATCATTTCCTTTTGCAGGAAAGG
AGCTTGAACAGATTACTGAACAGTTTCGTCTTGGTTTTGGTGGTTTTGTT
GATAAACCAGTTGGACCATACACCAAAACACTCCCAGCAGAAATCGAGGG
TATTTTAGAGAAGATCGAAGTTGATAAGAAAGAATACACTTATGCATACA
GAAACCATCTCCCACTCAATGAAGACATCAACGCATTTCGTTCAACTATA
GCTGGTCTAAACATTTCATTTAACGTGGACAGTCCTGAATGCTCATTAGA
GGCTTTAACGCAAGTCATTACATGTCAAAGCTCTATTGGTTGGAGGAATA
AGAATGAAGCACGTCGAATTGTCATCATCACAACTGATGCTTTATTTCAT
TACTCTGGTGACGGGCTTCTAGGAGGTTTCCCTAAACCAAACGACGGACA
ATGCCACATGGTGAATAATGTTTACAACGCATGGGACAGATATGATTATC
CATCTTTATCGCAAGTGAAAGAATTGATGCTTGACAACGATATGGTTCCC
ATCTTCGCCACTACCGGTAATGAAGCTTTGTACAAAAAAGTTGCAAGTTT
TATTGGTAATGGAGCTCAAGCTGAACCATTAGCTGAAGATTCATCAAATA
TTGGAACTTTGATTAGGACAGCTTATGAGAGGATTGCCAGAACTGTCACC
ATTGATGCTGATGTCCCACCCAATATCAAAACTGGATTCTCTGCTATTTG
CGGGTATGCTATTCTCAACTTAAGTTGAGCTAGAATTTTGGAATGTTTGT
GTGTCTTACAACAGCTATAATGTTTGAGTCTACCTGGAGGTCCTATGAAT
TATCCCCTGTTCGTTAGTTACCAGCTTTTCCCGGGATCGCCAGAAATATG
CAAAATGATGATGGAGCCCAATTTTTGGTCGCCAGGGTTTGTATTGTCCG
TATAAAGTTTTTTTTTTTTTGATTTTCTCTAGATACTTTAGGCGTACAAA
CTTTCGCGAGCAGAAACTTTCGCGATTTTTCGCGAATTTTGGCATTTTTC
GCGAAAGTAAATGTTCTTGAAAATTCTTAACAGGGCAATTCGCGAAAGTT
TATGCTTGCAAAAATTTCTTAAAAAAATTAGAAATCCAAAAAATTTCCAA
ATCCTAATAAATATTTAAAGGCAATAGTTTAAGGCAATTTTCATTAGAAA
GTTGTCATTTTTATCCAACAATTCGCGAAAGTTTATGCTCGCGAAAAACA
TTTTTTCCTCAAATTCGCGAAAGTAAATGTCGTAAATTTCGCGATTCTCC
GACCTCGCGAAAGTTTCTGCTCGCGAAAGTTTGTACGCCTATTTTCCCTG
AATTCTTGTTGATTTGAATTTGATGTTTTCTGTTGAATAAGGCAGATAGG
TCAAAATAAAAGTTCCACTTCTCTCCTTTAGACGTGAAAAGAACCGAACC
CAAGGTGCAACCTGTAACAATATTGAAATCGGAGAAACTGTAAGATAATT
TGTTTGTAAATTAGTGAAAATTAATAATTTGAAACAACGAAGTTCTGTTA
TAGTAAGTAAGTCTGCGACTGCAGTCGGAGGCGACCTGAAGGCTCTTCTT
TCGATAGTTATCTACCCGAAGGTAGGAGAAGGCGCCACTCTTTCTCCCTG
GAAAGTTCTGTTATGAATACTTCTTCTAACTGGATAATGAAATGAAATTG
ATTTTGATGATAAATATTTTTTTCACTACAGGTGACATTTTTTGCCAACT
TGGAAGCTGAGTCATGTGACGCAGACCAGACCGTTGAATTCAACATCAAA
ACAAGCTTCGATAATGTCAAAGTGAAATTGGAATTGATTTGTGAATGTGA
TTGTGGGCCAACAGTATGTTTGAATTTCCTCCATGACTTTATAAGAGTTT
CTGTTCAACTTATATTCACTCAGGAGATTGGGTAGCAGAGCAGGTGTATG
CATTTTGTCCTTATTGGGATTATATACGTATCCAAATCAATTATATAAGA
CAAGAGAAGCAGTGAAATTATTCACTTCCGAAGCGCTTTACGGATAAAAG
CATCACATCAAGGAAAAAATAAGACTATACAAAATGCTTCTTTTTCCCAT
CATAGCGTCAGGCAAAAATTAGGTTCCCCCCCCTGAGTTTTAAGTCCCAA
AATAATTATGAATTTTTTGTTAGCCCTCAGGACTTTTGCCCCTAGACACT
TTCAAAAAATTGATCCAGTAAAAAAGGTTTTCCAATGTAAATTGCGTTCA
GTTCTAAATTTAAGGTAAAATATTTTGCACACTTTCTATAAAAATACTGG
GCCGCAGGCAAAATTTTTCAGATTCATGAGCTTCAATTTGAGTAATTGAA
GCCAACTATTAAGCTGAATTATTTTAGCCCCCACATTGAGTGATGAGATT
TTAGCTTCCCCCAAGTACATACGTCGTCCCCCAAAAAAGTGGTGTACTTC
CAGCCCCCTCTTTTTTTGGGAAAAATTTAGGGTGTAACCCCCCCCCCCCT
CAACCAGCAGGGGGGCTGACGCTATGGCCTATTCAATCTTAAAAATAAGA
ACATGGAGCCTTTTGAGAAGTATTCTTATTTTACAAAGGCAAACCACAAA
ACCTTTCTATGTACTAAAATAAGATACCCTTTGATGCCAGTTTTTACCAA
AAACAACATCAGCGTAGAGTGATGTCTCATAGCCACAGTCTTTTTAATCT
TTAATGAAAGTTTTCTCTTTTTCCCTTTTTAGACGGTTGATTCAAGTGAC
TGTACAGACCGTGGTAATTTGACTTGCGGAAAATGTTTCTGTGACCGGTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003958XLOC_003958Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007073-exon-sc0000073-1575043694:455244..455280TCONS_00007073-exon-sc0000073-1575043694:455244..455280Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1575043694:454178..454886TCONS_00007073-exon-sc0000073-1575043694:454178..454886Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1575043694:453442..453499TCONS_00007073-exon-sc0000073-1575043694:453442..453499Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1575043694:453068..453199TCONS_00007073-exon-sc0000073-1575043694:453068..453199Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1575043694:452130..452198TCONS_00007073-exon-sc0000073-1575043694:452130..452198Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1510915933:455244..455280TCONS_00007073-exon-sc0000073-1510915933:455244..455280Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1510915933:454178..454886TCONS_00007073-exon-sc0000073-1510915933:454178..454886Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1510915933:453442..453499TCONS_00007073-exon-sc0000073-1510915933:453442..453499Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1510915933:453068..453199TCONS_00007073-exon-sc0000073-1510915933:453068..453199Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1510915933:452130..452198TCONS_00007073-exon-sc0000073-1510915933:452130..452198Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1491911889:455244..455280TCONS_00007073-exon-sc0000073-1491911889:455244..455280Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1491911889:454178..454886TCONS_00007073-exon-sc0000073-1491911889:454178..454886Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1491911889:453442..453499TCONS_00007073-exon-sc0000073-1491911889:453442..453499Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1491911889:453068..453199TCONS_00007073-exon-sc0000073-1491911889:453068..453199Clytia hemisphaericaexon
TCONS_00007073-exon-sc0000073-1491911889:452130..452198TCONS_00007073-exon-sc0000073-1491911889:452130..452198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:452130..455280 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.29853	3.15896	3.16503	2.57501	57.876	46.2524	50.9546	54.2004	56.5992	64.6132	46.2799	42.4023	69.8495	59.7033	45.5383	38.4908	64.1484	77.5737	65.5729	81.6356	53.8426	44.0641	27.5101	39.3198	37.1142	31.4404	62.0587	39.4421	33.2814	33.9344
Blast
[Close]
BLAST of TCONS_00007073 vs. Swiss-Prot (Human)
Match: ITB7 (Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 8.758e-60
Identity = 115/343 (33.53%), Postives = 196/343 (57.14%), Query Frame = 1 
Query:    4 LAQIQELGKILGKELEQITEQFRLGFGGFVDKPVGPYTKTLPAEIEGILEKIEVDKKEYTYAYRNHLPLNEDINAFRSTIAGLNISFNVDSPECSLEALTQVITCQSSIGWRNKNEARRIVIITTDALFHYSGDGLLGGFPKPNDGQCHM-VNNVYNAWDRYDYPSLSQVKELMLDNDMVPIFA-TTGNEALYKKVASFIGNGAQAEPLAEDSSNIGTLIRTAYERIARTVTID-ADVPPNIKTGFSAIC-------GREKNRTQGATCNNIEIGETVTFFANLEAESCDADQTVEFNIKTSF-DNVKVKLELICECDCGPTTVDSSDCTD-RGNLTCGKCFC 996
            L ++++LG  L   L+++T   R+GFG FVDK V P+  T+P+++        +++ +  +++ + L L  D  AF   +   ++S N+DSPE   +A+ Q   CQ  IGWRN +   R+++ T+D  FH +GDG LGG   P+DG CH+  N +Y+    +DYPS+ QV + +   ++ PIFA T+    +Y++++  I   A  E L+EDSSN+  LI  AY  ++ TVT++ + +PP +   + + C       G+ ++R Q   CN++ I +TVTF+ +L+A  C  +  +       F + + V+L  +C+C+C  T   +  C+D +G+L CG C C
Sbjct:  168 LERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPC-PTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQIGWRNVS---RLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPIFAVTSAALPVYQELSKLIPKSAVGE-LSEDSSNVVQLIMDAYNSLSSTVTLEHSSLPPGVHISYESQCEGPEKREGKAEDRGQ---CNHVRINQTVTFWVSLQATHCLPEPHLLRLRALGFSEELIVELHTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSC 502
The following BLAST results are available for this feature:
BLAST of TCONS_00007073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITB78.758e-6033.53Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1 SV=1[more]
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