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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007069 ID=TCONS_00007069|Name=TCONS_00007069|organism=Clytia hemisphaerica|type=transcript|length=4266bpRun BLAST on NCBI protein sequence of TCONS_00007069-protein >TCONS_00007069-protein ID=TCONS_00007069-protein|Name=TCONS_00007069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1045bp MSAQDHLLKTLDLALTPTEAGAVNFSHLRTLLLGLINSTSHGPSNEENRVRun BLAST on NCBI transcript from alignment at sc0000073:394332..403708- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007069 ID=TCONS_00007069|Name=TCONS_00007069|organism=Clytia hemisphaerica|type=transcript|length=9377bp|location=Sequence derived from alignment at sc0000073:394332..403708- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:394332..403708- >TCONS_00007069 ID=TCONS_00007069|Name=TCONS_00007069|organism=Clytia hemisphaerica|type=CDS|length=40794bp|location=Sequence derived from alignment at sc0000073:394332..403708- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007069 vs. Swiss-Prot (Human)
Match: QRIC2 (Glutamine-rich protein 2 OS=Homo sapiens GN=QRICH2 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.035e-16 Identity = 65/240 (27.08%), Postives = 123/240 (51.25%), Query Frame = 3
Query: 1857 QQNTMLETLHNHLITLQEEQVRLAGQLANMLDDTKDEFNRKQQHIDALYGYIEKLQNNKADKQDTDSSINVKADKQALDSKVNISTFDERYXXXXXXXXXXXXXXDQFVEKENTLSNALDKLHSDLDSKMDSEAEKKLKKFMEDRLKEIQ---KSRTTLHHHDDVTNEEDAIMLQLRNAAGLRKPMSLLYNCISCDRPVDISMRG----VMGSVPHNFPAKKSMGPYTSYDLESLRNNKK 2555
Q +L + + ++ +Q + +L +N+++D + +KQ+ I LY +EKL+ KA+++ + I+VKADK AL +KV+ FD EQ + + + +E LD+L +++D+K+D +K+ +EDR K ++ + R L+ D+ AA +R+ + ++C+SCDRP++ + G V + P P S+ PYT ++LE +R + +
Sbjct: 1255 QDEELLGRVQSAILQVQGDCEKLNITTSNLIEDHR----QKQKDIAMLYQGLEKLEKEKANREHLEMEIDVKADKSALATKVSRVQFD---ATTEQLNHMMQELVAKMSGQEQDWQKMLDRLLTEMDNKLDRLELDPVKQLLEDRWKSLRQQLRERPPLYQADE--------------AAAMRRQLLAHFHCLSCDRPLETPVTGHAIPVTPAGP-GLPGHHSIRPYTVFELEQVRQHSR 1472 The following BLAST results are available for this feature:
BLAST of TCONS_00007069 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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