TCONS_00007061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007061
Unique NameTCONS_00007061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007061 ID=TCONS_00007061|Name=TCONS_00007061|organism=Clytia hemisphaerica|type=transcript|length=2509bp
CACCCAttacacgcggttgttttggctgctggctggctggcagtttcctc
caagaatgcactccaaaaatggatggaaaaatggaaacccgaaaattttt
acgtccgaccgactcactttttagacccaacgaggacgcgaaatgaagat
atttgtgattgccgcctaataTAAAAGAATAATAAAAGAATCTCCATTTT
TATATTAGGAAGAGATAAAAGAACATTTGTTGTCTTACTTTATCAACAGT
TTCAAACACTCAAAATGTCCAAATCTTGCAGCCTCATGCAAGTATGTCCA
GCCACCTTTTCTGTGAATATTGATGTTTAATTTTGGGTTTTCAAGAAGGT
ATTTCACACACTCCAAGTGACCATCATAAACAGAAAAATACAATGGTGAT
CTATTGTCATAATCAACATCATTGATGTCTGCTCCATTTTCTAGAAGTAC
TCTAACTGAATCAACATTCCCAACTCGAGAAGATACATGCAATGCAGTCA
TTTGTTGTGCATTTGCTCCATCGACGTATGCTCCATGTTGAACAAGATAC
TCTAAAATGTGGCTTTGTGAGTTGCTTGCAGCTTGGTGAAGTAAAGTTGA
TGATAGATTTCTAAATGCTTGTACTGAAAAGTCATTCTCCAAAATAGATT
TCAAACTAGCTAGGTGTCCATTTGAAACAGCTTTGAACAAAGCATCAAAA
TTGTCAACAACTGAAGGTTTTTCGTCTTTCACCGTTGCAGCCATTTTCGA
GGTctggaaaatgtttgtttttctagCCGTGACACTCGATCACATATTTT
TACTCAAAAGCCCGAAAAAGCTTAGGCTAAAAGCTAAGCttcaaagttga
tatctttAGAGAATCGGACTCTAAGCTTTCCGTCCATCAATATCCAAGAT
GGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTG
AAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAcatGGGAGTAAC
ATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAGCTGATATTGA
TGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATACTTGCAAAGTG
ATTTGAAGCAGCTTTTGGGAAAGATTGAGAAGGGACTTTACAAAATACAT
GCAGATGAACGCGAAAAAATGAAGACCGGAGAATCTGCTCCTCCTAATGT
CAATACTACAGATCAGAATGctgaaccatttttgaagatCGATTTGGTTT
CTGAAGGGTCCCCTGCTGAAAAAGCTGGCTTGAAGCTAGATGATTTGATT
GTACGATTTGGAAGTTTAACTTGTGAGAATTACACTGGATTACAAATGAT
TGGCTCTTTGGTACAACATTCTAAAGAGaaaaatatcgaaatcGCTGTCA
AACGTAATGGAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCA
GGCAGAGGCCTGCTTGGGTGTAATATTGTACTCTACAAGAAGTAATTTAT
TGCGAGTTCCAAGAAATGCCTCTGTCAGTCTTCATTATGTTAGGGAAATG
GGATCACGAAGCTTGAAATTTCACACACGTCACGGGGAAAGTCAACAAAG
AGTTGAAGCATTGAAATTTGCTAAGAATTGTTCCAAACGATTATATCGGG
CATTTGACCTTGCAGAAATGGAATGTTCATTGAACCACGTTACACTCTTG
TGGCCATATGGTAAATGATGAAAGAAATATGaatcaataattatttttag
tcaCATCCAAGGTATTTATTATAAATAGATTTTAAATTATACTAAGTTTC
AGTCAAataaataattataaaaaaagacacaaaaaatgAGATATCGAGTT
TCTTGTTTAataaatgctgacgtcagcacaatTGACAAAATGCTCCTGTT
CACCATGACCCATACCACAGCCTTTAGCATCACATCCCCAAGAGTTGCCA
GTTTTGTACCACCATTGAATCACACAACGTTCACAGGTCAAGTGGGAAGG
TAATTTCAAGTGGATTTTGTGTACATTACGTCCGCTGGTTCGGATTGGGT
ATTTCGTTTGTCCGTTAACCTTTGAATAGAAAAGCGGGCAGTTTGAGACA
ATTCACTTTTTGCATTCACACTAAATTTCTCGAATTTGAGCCGAACGTGC
TTATCACGAGCTATTTCAGAGAATTACAGAGCCTTTCTTTTGTTTACCTA
CTCTTTCCTCTAACTAAAGCTAACCGAACCGAATCCAGATTTCTCTGGTC
TTTAAATTGACTTTTTACAACAGCCTTTGTATGAAAAAATGATAGGTTTC
ACACACggcaaaaacaaaaactcacTTGGCGTAAAAGGACTCCGTTTAAT
TTTCCCTCTTTGTCACCGGAAGTATCCCTGTTGCTGAAATCTCCGATACG
GAATTCGAAGTATCCCAAATGGCTTGCAGTCAATAAGACGTCGAGTTCAA
AGTTTTGTCCACGTCTGTAAGTTTTGCCAATGATTCGGTTTCCATAACGA
CCTCCATCC
Run BLAST on NCBI

protein sequence of TCONS_00007061-protein

>TCONS_00007061-protein ID=TCONS_00007061-protein|Name=TCONS_00007061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MATIKEVKDLVQQKVEVERELDELHSALESHGSNMTDELVDPEGYPRADI
DVLTVRKTRVRIIYLQSDLKQLLGKIEKGLYKIHADEREKMKTGESAPPN
VNTTDQNAEPFLKIDLVSEGSPAEKAGLKLDDLIVRFGSLTCENYTGLQM
IGSLVQHSKEKNIEIAVKRNGKLSNLILTPSTWSGRGLLGCNIVLYKK
Run BLAST on NCBI

transcript from alignment at sc0000073:107338..121785-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007061 ID=TCONS_00007061|Name=TCONS_00007061|organism=Clytia hemisphaerica|type=transcript|length=14448bp|location=Sequence derived from alignment at sc0000073:107338..121785- (Clytia hemisphaerica)
CACCCATTACACGCGGTTGTTTTGGCTGCTGGCTGGCTGGCAGTTTCCTC
CAAGAATGCACTCCAAAAATGGATGGAAAAATGGAAACCCGAAAATTTTT
ACGTCCGACCGACTCACTTTTTAGACCCAACGAGGACGCGAAATGAAGAT
ATTTGTGATTGCCGCCTAATATAAAAGAATAATAAAAGAATCTCCATTTT
TATATTAGGAAGAGATAAAAGAACATTTGTTGTCTTACTTTATCAACAGT
TTCAAACACTCAAAATGTCCAAATCTTGCAGCCTCATGCAAGTATGTCCA
GCCACCTTTTCTGTGAATATTGATGTTTAATTTTGGGTTTTCAAGAAGGT
ATTTCACACACTCCAAGTGACCATCATAAACAGAAAAATACAATGGTGAT
CTATTGTCATAATCAACATCATTGATGTCTGCTCCATTTTCTAGAAGTAC
TCTAACTGAATCAACATTCCCAACTCGAGAAGATACATGCAATGCAGTCA
TTTGTTGTGCATTTGCTCCATCGACGTATGCTCCATGTTGAACAAGATAC
TCTAAAATGTGGCTTTGTGAGTTGCTTGCAGCTTGGTGAAGTAAAGTTGA
TGATAGATTTCTAAATGCTTGTACTGAAAAGTCATTCTCCAAAATAGATT
TCAAACTAGCTAGGTGTCCATTTGAAACAGCTTTGAACAAAGCATCAAAA
TTGTCAACAACTGAAGGTTTTTCGTCTTTCACCGTTGCAGCCATTTTCGA
GGTCTGGAAAATGTTTGTTTTTCTAGCCGTGACACTCGATCACATATTTT
TACTCAAAAGCCCGAAAAAGCTTAGGCTAAAAGCTAAGCTTCAAAGTTGA
TATCTTTAGAGAATCGGACTCTAAGCTTTCCGTCCATCAATATCCAAGAT
GGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTG
AAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTAAGTAATTTC
TCAATATATTTTACCAATCTAGAAATGTTTTGATTCTTTATTTGTGACAT
TTATTTGTCAATCTTATCGAATTAAAGTTTCAAAGGTATTGCTCCACAAA
TGTTTGCTATTTTTCTTTCCAAAAGAAACAAGTTGCAGATTTAATGAGCA
AAAAAGTACTAGTTAAACTTATTTACTTATTTGGCTAATAACTTATTTTA
ACTTATTTCTCTTACAAGAACTTAATTTGGAAGGAACTAATTTTAGTGAA
TCAGATGGTAAGGTACAGTCAGGATTAACCGCCCCGGGGGGGCACTCGAT
CTGAAAACGACCATACGTTCGGCCCAAAATTTGGCTTCTAAAATCGGACC
CTTACAGTGCAGTGAATTACCATGAAAAATCATACCCTTACAGTGCACTT
TTTCAAAATTTTTCGCCCGCAAGGGCGAAAATTTTTGCAATTTTCCAAGA
AAATGTGGAATTTTTCCTCCAAAATTGACCAATTTTGTGCCAATTTTACC
AAAAAATTGGCCTTTTATCACAATTTCCTACCCTTACAGTGCAGTTCAGG
TGCAGTTTTGTAATTTCCTACCCTTACAGTGCACTAGCTGAACTATGAAA
AACCTACCCTTAAGGGCCGAACGTCTGGTAGGTCATTTACCTTAAGTGCC
CCCCCCCCCCGGGTTAACCGCCTAATAGCAATAGGAACAAATTTCTTGAT
TTCTAAAATACTCCTTATCTAAGATATAACTACTTATATAGGCATATTTT
TTATTCTAAGCTAGCTAGGAACATTTTCTTTCTTCTCCAAATTTTTCATT
TTAAAACAAAGTCACATGTTCAAGTTATGACTAATAGATGTAATAATGCA
AAGTGGTTTCTTTTTCCAAAAATCAGCACTTTTGGTGGGCGGAAGGGTGG
AAAATCTTAGCTTTTGTAAAAAATATCTTAAATAGGAACATTTTAAGGCT
CTCTTTACTAAAAAACGGGATTTGATGTGTAAATAGACCATTAATAAGCA
GTGGAATCTGTGTGGAAACTTTAAAATGCAATAATTCAATACTGCATTGA
TGAATCTTTCTGCACGTGCGTTTGGTTTGGGAACGCGAAACACGAACGCA
AACTACCCATGTCTAAACTTTTCAATACATCTCCAGAACTAACAGACTTA
CCTTCCCCAAACATTGAAGAAGCCTCTACTAATTAAAGTAAATGAGATAA
GATAAGATAAAACCTTAAAATCAACCAGAATTCACAACCTTTCGTCCAAA
GCAAAAGACGTGCTTTTCTCGCCGCCATCTTGTTTTAGAATGAGAATTCT
AGAGAATTCCATTCGGTTCCAGCTTCCGCGGTCTTTTTTTCATCCAATCA
GATCGCGTGATTTCACTTTCGCTTTCTCTAGTCCAATAAGACTGCGGGAT
TTGAGTCATGTGACATCTCTATTAAAAAACCTGCGCGAATTAAAATAGAA
ATACAGGGGGTCACACTACTGGCTACAGGAACTGAAAGCAAGCAATTAAG
GCCAATATTTTTGGTTTTTCTGAAGGACAAAAGGTATAGAAAGCTTTACT
GAAAGAGGGATAAGGCTGGGACAATCTATTTAAAAGATATGGACAAGAAA
AGGCACTTTTTTGGGTGATAATTAAGATTTTACTCAGAAACTTTAATTCT
CTTACCCCCGTCTCGGCCCCCCTGATATGAGCAAGGGAACCATGTTGGCC
ACCCCTACTGAAAATTTCAGATCAAAACAAACAANNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGGAATAAAAAGATATAGTCAAATCTTGTAGGGTCATTTT
TCAAAAAAATTTTGCCAAATTCGATTTTCGCATTTCGCCATTTTACCCTA
CGCAAACGCACGTGTCTGAAATTTGAAACACAGTTAGAAAATACCTAAAT
GAAAACATAGACAGTTTAGTCACACTAGCGTCCCGCCAAAATATGTATCA
AAGATTAATGCTGCGAAAGCGCTACATCGTTTACTTGACTTGCAAGCAAA
AAAATGTGCCGCAAAACTACTAAAGGGATGCATGAAAAAATAACCCGGCG
CTTTTTGATGAAATTAACATTTTCAAAAACTATGAGAAATTGCCTAAAAT
TTGAGCTATAGATGAACAAATTTGAGCCAAGCCAACCTTGAAAACTAATT
TGAAGATCAACTTCCCAAGAAAAATATTTACGGGGGAGACGAAACTCACC
TAGATCCGCGCACCGCCGGATAGGCTATTTCCCGGAAATTTTGCCTGACC
TCAAACACAGACCCATTTACATGTGCGGAATTATTTTTACACCACTTTCC
TCGTTTATTTTTGTTGTCAACTGGTTTCTGTCAGAATGCAGACAAGCAAA
ATCGAGTCATCTCATATGTAAGCAAACTTACAACGGGGGTTCTGTTTTCT
CCTTCTAGCTGTGTTTTGGCATCGATGCAGGATCTTTTTACATCTCATTT
TAGAACTTTTCATGTTATTGAGCAATGAAAAATTGAAAAAAATCACTTTT
AAAGATCCGAAAAAAACTTTTCCCTGATATAATTTTACATTTTTCAAACA
CCTCTACACCTCTGACATCTTTGCCCTTATAAGGACAGCACAGACATTTC
TGCTAACTTGATATTTCATCGTTAAGAAAATTGCTGTTTTTGGCAATAAT
TGCCATTTTTATTTTAAACACCCAACTGCATTTCCTTTTTTTCTGAAACA
GTATAAATTAGCTATATTGTATATAGATAGTCATTAATGATGAAAGCAAT
CAAGAAAAAAAGATTGTTTGCCAATTTTAGGGATTCGCAAAACTCAAAAT
TAAGTCTTGCCGAACGCAATCGTAATGCCAAACGTAAAATTCTGGGTAAA
ATTCGATTGATTCGATTGATATTCGATTACGTTCGATTGACATTCGATTA
CTTTCGATTGATGTTCGATTACGTTTGACTGCGTTCGACGGGTGGTCGAT
TAAATTAGATTCCAATTTACCTCAATTCCTTTCAATTTCGAGCGCCTCTT
ATTAGGGAGGTTAAGTATCGATACGATAGATAAATCAACGCAACGAACGG
GCTTTGACACACAACCTGCAGTCATGTGGGACTGCATGATCTGCATTTTC
TAGAATCCAGGCTAAAATGATTCACATCATCTTGTTTAACTCTTCAAATG
TTGAACAAGAATCAACGTTAATCAACAGAATCAATTAGTCGAACCAGTCG
AATGCATGAGCCAACCGAACGTAGTCGAATCAATCGAATCAATCGAACAC
AATCGAATCAATCGAATCCAGGCACTAATCGAACGCAATCGAATCAATCG
AGAAAATCGCGGTAATATTCGATTGGCATTCGATTGCGTTCGGCAATCGA
ATTTCAATCATTCGATTGCGTTCGATTGCGTTCAATTGATTCGGCGTTCG
ATTCGTTCGATTGACATCGTCTGGTAATATAAATGAAGACTCACATGATT
GGTAAACAAGTGATGGGGGCAGAGGATATATTGGATATTTTGTCCTTGGG
GGGGGGGGAGTGGAAAATGATACATCCTTTACCCCCATACTCAAATTTCT
TCTGGAAAAACCCAATAGAATATACACTAACAATTCACTTCCTGGAAAAT
ATGTGACAAAAGAGACTGACTAGATCCAAAGTTAAGGGGTGGTACAGGAA
AGCCCCCCCCCCCAGCTCTGAGTTGCCCCTAAAAGCTGAGTATGAATAGG
GTTAAGAATCCAGAGAAGGTGCTGACAACGAGTTAAAAAACATATTTTTT
TTTCAGCATGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTA
TCCAAGAGCTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCA
TTATATGTAAGTTATAAAGTTTTACTCCTTTCTTGCAATACTCTATTTCC
TCCATTGAGGGCAGCATTATTAATTAGCTTTCACCTTTAAAATGCCTCAC
TCATTAGGTAAAAAGGAGAATTGTTTGTTTTGCTTTTCTTTAAGTTACGA
GATAGACGCCTTTAAGTCATGTCGCCTTCTAATAAGTGAAGCACCTAAAG
TCACAAAATTAGATACCTTTTTTTGACAACATTTTACATCAGGTTAATTT
CTATGTCTGCCTAGGTGAAAAATCACAAGCACAACAGTTACATTTATCAA
CCATCAAACCTAGAACATAACATGCATTGTGTTCCTAAACTTATCTTTTG
ATAATCATTAAATATCTAGATATTCTTTCTTTTTGCACTCAACAGACTTG
CAAAGTGATTTGAAGCAGCTTTTGGGAAAGATTGAGAAGGGACTTTACAA
AATACATGCAGATGAACGCGAAAAAATGAAGACCGGAGAATCTGCTCCTC
CTAATGTCAATACTACAGATCAGAGTAAGTTCCATTGTTTTAGTTTGAAC
TAGACCAATTTTTCAACCGTTCGAGAGGCTTTGTCAGTATTGTTAGTGGC
TTTTAATTGAATTATTTCTAAAAGAAATAGCTTAAGTACAGACAAGTTGA
ACAACTTTTAATTCCTACATGCTTCTCCGTGGTGTTGCTCTTCAGACATT
TAAAATACAATGTGTAATTTTTTAATAATAATGTTCATCATGTAGATGCT
GAACCATTTTTGAAGATCGATTTGGTTTCTGAAGGGTCCCCTGCTGAAAA
AGCTGTAAGTACACTGTACACTCCATAACTTTTACCCATTTTGATCACAA
TGAACTAGCCAGATAAAATGAAAGGAGCGACATGAAATTTATGAACAATT
TCATGAACATGAAATTTTCTATATCATGATTATTGAATCCCCTAGGATTC
CAAAATACACCTTTTCGACCGTAGTCGCCAATTGCCGCGCGGGCATTTTT
TTGTCCGCTTTATCCCACTAAAACCGTCCCAGTCCTTTTTTCGCACCTAT
AGACAATAGAAAAATGTGTCAAAAAAGGATTGGATCGAGTTTAGTGGGAT
AAAAGTGGCACGCGCCTGACCGTGCGACTACTGTCGAAAAGGTGTATTGT
TCGGATCGCTTAAAACTCATTTCTGCAAATGAAAAATTCGACCCCTTTGA
GATTAATTAATAATTACCCATTACATCACAAACCGATAGAAAATTTAGTT
TTAACTATTGTAATAGAATAATCAACTAAGTCTCGAAACTAAAAAAACTA
AAAATTGAACGTTCAAATGTCCAATTTTCAGTATATTTTATTTACTTTAA
TAATCAGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTAA
CTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACAT
TCTAAAGAGGTACATCTTTTGTCCGGCTATTTTTCTTTAAATTTGTGCTT
GTGTGGTGTGGAAGTTTAAAAATGTTGTGTAAGCAAACGATAGGACATTA
CATTAAATGATATCCTTTAATGATTACTCTCCTTTTCAAATTAAAGTACT
CAAGTCTCAATTTTTAAAATTTATTTCGTGATATCTTAGAATGAAATTCA
AAAGAAAGAGTTTGGTTTGATTCTCTAACATGTCTTTCACTCTTTAGAAA
AATATCGAAATCGCTGTCAAACGTAATGGAAAACTGTCAAATCTTATATT
GACACCTTCGACTTGGTCAGGCAGAGGCCTGCTTGGGTAAGTGAATTATT
TTGCCTTCTTCAGGTTGTTATTAGAAAGACGGCGGTAATGACGAGAAAAG
CGAGAAGTAATCCAGAAAAAAAAAAGATATATACCTAGAAATAAGTGAGA
ATATACCTAGAAATAGGCGAGAATATACCTAGAAATAAGCGAGAATACAC
CTAGAAAAAACCGAGAACAAACCTAGAAAAAACCGAGAAAAAACCGAGAA
TATACCTAGAAAAAAACGAGAAAATATCCAGAAAAAAACGAGAAATAAAC
CTAGAAAAAACCGAGAAAAAACCGAGAATATACCTAGAAAAAAACGAGAA
AATATCCAGAAAAAAACGAGAAATAAACCTAGAAAAAACCGAGAACGAAC
CTAGAAAAACCGAGAATATAACTAGAAAAAACCGAGAAAAAACCGAGAAT
ATACCTAGAAAAAAACGAGAAAATATCCAGAAAAAAACGAGAAATAAACC
TAGAAAAACCGAGAATAAACCTAGAAAAAAACGAGAAGACACCTAGAAAA
AACTGAGAATATACCTAGAAAAAATCGAGAATATACCTAGAAAAAACTGA
GAATATACCTAGAAAAAAACGAGAAGACACCTAGAAAAAACTGAGAATAT
ACCTAGAAAAAATCGAGAATATACCTAGAAAAAACTGAGAATATACCTAG
AAAAAAACGAGAAGACACCTAGAAAAAACTGAGAATATACCTAGAAAAAA
TCGAGAATATACCTAGAAAAAACTGAGAATATACCTAGAAAAAACTGAGA
ATATACCTAGAAAAAAACGAGAAAATATCCAGAAAAAAACGAGAAATAAA
CCTAGAAAAAACCGAGAATATACCTAGAAAAAAATAAGAATATACCTAGA
AAAAAACGAGAAAATATCCAGAAAAAAAACGAGAAATAAACCTAGAAAAA
ACTGAGAATATACCTAGAAAAAACCGAGAATATACCTAGAAAAAACCGAG
AATATACCTAGAAAAAACCGAGAATATACCTAGAAAAAACCGAGAATATA
CCTAGAAAAAACCGAGGATATACCNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACCTTAAACTGACGAG
TTAAATTTTCATGAAACCAAGTTGGTCAAGAATTCTAAAATGGTGGTTAA
ATTATTTTTTGTGCCTAATTTTAGTTTAAAACTATATTGGAATGGTAATT
ACCTCTCATAATATTCTATAGTTTAAAACTGAGACAGAAGTTGACAAAGT
TAACACACGAATTAAAAAATGACCTAAAATTTTCCCGAAAAACCTAGAAA
AAAATACTATACAAATAGCAGCCATACCTGTAACATTTCACGATTTGACT
TCTATCATTTGTCAGCGAACCATAAATTTTTTGGATTGGTGTATAAATGA
TAATTTGTTGATTAATTCTTTCGAATAGTTTTTGGTATTCTTCAAAAATG
GACATGGTGGTCGTGATCTTCTTTCCTTGTCCAAGTGAAGTTTGTTAGGT
TCAAATGATAATGCTTTTCTCTGCTATTTGTATAGTATTTTTTTCTAGGT
TTTTCAGGAAAATTCTAGGTTATTTTTTAATTCTTGTGTTCACTTTGTCA
ACTTCTGTCTCAGTTAAAAACTATAGAATATTATGAGAGAAAATTACCAT
TCCAATAGTTTTAAACTAAAAATAGGCACAAAAATAATTTAACCACCATT
TTAGAATTTTTGACCAAATTGGTTTCATGAAAATTTAACTCGCACCTAAC
TCGTCAGTTTAAGGTGCACCATAAATTGACGAGTTAATAAACTCGTAAGA
TTAAGGTGCACCATAAATTGACGAGTTAATTAACTCGTAAGATTATGGTG
CACCATAAATTGAAGAGTTAAATTATCTACTTGTGACGTCATTATTTCCC
ATTGATGACGTCACATTTAACGTAACTCGTGTTTTTTGTAACTCGTGTTT
TTGGACCTACCCCGGTGGGCTGTAGGTCCTATAAATTAACCTCTGTTCGT
CCGTTCGTTCGTCCGTTCGTTCGTCCGTTCGTTACTAGCTTTTCTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACTCG
AATTTTCATCTTTAGCTTTTTCTGATTTTTTGCAGAAAGATGCGTATTTG
CAATGCTCAAAACATGGCCGAGTTCGATTCTTGAGAAAAAAATTTTTCCG
GTTGAAAATGCCGGAAATCGCCGTCTTTGCAGATTTTCATTATATGTTTC
CCTTGTATTTCTATGTTCTTCACACAAAAACATTATTGATAACAATGCTC
ACCATCAAGCATGATTCAATTATAAAACTGATTTTTGCGACCAGAACTTT
CTATTAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTCGCTAAACGATATATTTTCTGACTGATTTTTTTCTCCTCGCAT
TGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTT
TAACTCGTGTTTTCCGAGCCTCGAAATAAGTGAGAAATACCCAGAAAAAA
ACAAGAATATACCTAGAAAAAACAAAAGAAAACCAGAACAAACCGAGAAT
TAACCGAGAAAAAAACGAGATTAAACCGAGAAAAAAGCGAGAATATACCC
AGAAAAAATGAGAATCGAACCAGAAATTTGAAAATTATTAGGTCAGGTAT
TTTCATTAAATTTCAATGTAATAAAAGATCACAATAAAATATGCTCTTTA
TTTCAGGTGTAATATTGTACTCTACAAGAAGTAATTTATTGCGAGTTCCA
AGAAATGCCTCTGTCAGTCTTCATTATGTTAGGGAAATGGGATCACGAAG
CTTGAAATTTCACACACGTCACGGGGAAAGTCAACAAAGAGTTGAAGCAT
TGAAATTTGCTAAGAATTGTTCCAAACGATTATATCGGGCATTTGACCTT
GCAGAAATGGAATGTTCATTGAACCACGTTACACTCTTGTGGCCATATGG
TAAATGATGAAAGAAATATGAATCAATAATTATTTTTAGTCACATCCAAG
GTATTTATTATAAATAGATTTTAAATTATACTAAGTTTCAGTCAAATAAA
TAATTATAAAAAAAGACACAAAAAATGAGATATCGAGTTTCTTGTTTAAT
AAATGCTGACGTCAGCACAATTGACAAAATGCTCCTGTTCACCATGACCC
ATACCACAGCCTTTAGCATCACATCCCCAAGAGTTGCCAGTTTTGTACCA
CCATTGAATCACACAACGTTCACAGGTCAAGTGGGAAGGTAATTTCAAGT
GGATTTTGTGTACATTACGTCCGCTGGTTCGGATTGGGTATTTCGTTTGT
CCGTTAACCTTTGAATAGAAAAGCGGGCAGTTTGAGACAATTCACTTTTT
GCATTCACACTAAATTTCTCGAATTTGAGCCGAACGTGCTTATCACGAGC
TATTTCAGAGAATTACAGAGCCTTTCTTTTGTTTACCTACTCTTTCCTCT
AACTAAAGCTAACCGAACCGAATCCAGATTTCTCTGGTCTTTAAATTGAC
TTTTTACAACAGCCTTTGTATGAAAAAATGATAGGTTTCACACACGGCAA
AAACAAAAACTCACTTGGCGTAAAAGGACTCCGTTTAATTTTCCCTCTTT
GTCACCGGAAGTATCCCTGTTGCTGAAATCTCCGATACGGAATTCGAAGT
ATCCCAAATGGCTTGCAGTCAATAAGACGTCGAGTTCAAAGTTTTGTCCA
CGTCTGTAAGTTTTGCCAATGATTCGGTTTCCATAACGACCTCCATCC

Coding sequence (CDS) from alignment at sc0000073:107338..121785-

>TCONS_00007061 ID=TCONS_00007061|Name=TCONS_00007061|organism=Clytia hemisphaerica|type=CDS|length=4179bp|location=Sequence derived from alignment at sc0000073:107338..121785- (Clytia hemisphaerica)
GTGTAATATTGTACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCA
AACGTAATGGAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCA
GGCAGAGGCCTGCTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTT
GGAAGTTTAACTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTT
GGTACAACATTCTAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGT
TTCTGAAGGGTCCCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCA
GCTTTTGGGAAAGATTGAGAAGGGACTTTACAAAATACATGCAGATGAAC
GCGAAAAAATGAAGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACA
GATCAGACATGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTT
ATCCAAGAGCTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGC
ATTATATATGGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAG
TTGAAGTTGAAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTG
TAATATTGTACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAAC
GTAATGGAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGC
AGAGGCCTGCTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGA
AGTTTAACTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGT
ACAACATTCTAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTC
TGAAGGGTCCCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCT
TTTGGGAAAGATTGAGAAGGGACTTTACAAAATACATGCAGATGAACGCG
AAAAAATGAAGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGAT
CAGACATGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTATC
CAAGAGCTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATT
ATATATGGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTG
AAGTTGAAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAA
TATTGTACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTA
ATGGAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGA
GGCCTGCTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGT
TTAACTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACA
ACATTCTAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGA
AGGGTCCCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTT
GGGAAAGATTGAGAAGGGACTTTACAAAATACATGCAGATGAACGCGAAA
AAATGAAGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAG
ACATGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAA
GAGCTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATA
TATGGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAG
TTGAAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAATAT
TGTACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTAATG
GAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGAGGC
CTGCTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTA
ACTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACA
TTCTAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGAAGG
GTCCCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTTGGG
AAAGATTGAGAAGGGACTTTACAAAATACATGCAGATGAACGCGAAAAAA
TGAAGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAGACA
TGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAG
CTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATAT
GGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTG
AAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAATATTGT
ACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTAATGGAA
AACTGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGAGGCCTG
CTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTAACT
TGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACATTC
TAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGAAGGGTC
CCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTTGGGAAA
GATTGAGAAGGGACTTTACAAAATACATGCAGATGAACGCGAAAAAATGA
AGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAGACATGG
GAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAGCTG
ATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATATGGC
GACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTGAAA
GGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAATATTGTACT
CTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTAATGGAAAAC
TGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGAGGCCTGCTT
GGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTAACTTGT
GAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACATTCTAA
AGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGAAGGGTCCCC
TGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTTGGGAAAGAT
TGAGAAGGGACTTTACAAAATACATGCAGATGAACGCGAAAAAATGAAGA
CCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAGACATGGGAG
TAACATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAGCTGATA
TTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATATGGCGAC
GATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTGAAAGGG
AATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAATATTGTACTCTA
CAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTAATGGAAAACTGT
CAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGAGGCCTGCTTGGG
GCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTAACTTGTGAG
AATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACATTCTAAAGA
GATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGAAGGGTCCCCTGC
TGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTTGGGAAAGATTGA
GAAGGGACTTTACAAAATACATGCAGATGAACGCGAAAAAATGAAGACCG
GAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAGACATGGGAGTAA
CATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAGCTGATATTG
ATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATATGGCGACGAT
AAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTGAAAGGGAAT
TGGACGAGCTACATTCTGCTTTAGAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003948XLOC_003948Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007061-exon-sc0000073-1575043694:120798..121785TCONS_00007061-exon-sc0000073-1575043694:120798..121785Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:116330..116429TCONS_00007061-exon-sc0000073-1575043694:116330..116429Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:115812..115940TCONS_00007061-exon-sc0000073-1575043694:115812..115940Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:115532..115590TCONS_00007061-exon-sc0000073-1575043694:115532..115590Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:114877..114978TCONS_00007061-exon-sc0000073-1575043694:114877..114978Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:114550..114638TCONS_00007061-exon-sc0000073-1575043694:114550..114638Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:107338..108379TCONS_00007061-exon-sc0000073-1575043694:107338..108379Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:120798..121785TCONS_00007061-exon-sc0000073-1510915933:120798..121785Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:116330..116429TCONS_00007061-exon-sc0000073-1510915933:116330..116429Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:115812..115940TCONS_00007061-exon-sc0000073-1510915933:115812..115940Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:115532..115590TCONS_00007061-exon-sc0000073-1510915933:115532..115590Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:114877..114978TCONS_00007061-exon-sc0000073-1510915933:114877..114978Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:114550..114638TCONS_00007061-exon-sc0000073-1510915933:114550..114638Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:107338..108379TCONS_00007061-exon-sc0000073-1510915933:107338..108379Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:120798..121785TCONS_00007061-exon-sc0000073-1491911889:120798..121785Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:116330..116429TCONS_00007061-exon-sc0000073-1491911889:116330..116429Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:115812..115940TCONS_00007061-exon-sc0000073-1491911889:115812..115940Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:115532..115590TCONS_00007061-exon-sc0000073-1491911889:115532..115590Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:114877..114978TCONS_00007061-exon-sc0000073-1491911889:114877..114978Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:114550..114638TCONS_00007061-exon-sc0000073-1491911889:114550..114638Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:107338..108379TCONS_00007061-exon-sc0000073-1491911889:107338..108379Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007061-proteinTCONS_00007061-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:107338..121785 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.5012	14.3719	20.66	22.8208	6.73728	5.36179	8.37801	9.85472	10.7634	8.1533	6.13786	7.24445	5.60941	4.84361	4.6797	5.34695	7.59478	6.70695	4.20354	4.05546	6.4932	5.5692	8.90254	7.33387	13.344	13.522	6.09711	4.78727	6.48372	6.07544
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00007061 vs. Swiss-Prot (Human)
Match: PSMD9 (26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.561e-42
Identity = 81/207 (39.13%), Postives = 130/207 (62.80%), Query Frame = 2 
Query:  887 SISKMATIKEVKDLVQQKVEVERELDELHSALESH-GSNMTDELVDPEGYPRADIDVLTVRKTRVRIIYLQSDLKQLLGKIEKGLYKIHADEREKMKTG------ESAPPNVNTTDQNAEP--FLKIDLVSEGSPAEKAGLKLDDLIVRFGSLTCENYTGLQMIGSLVQHSKEKNIEIAVKRNGKLSNLILTPSTWSGRGLLGCNIV 1480
            S + + T+ +V++L+++K E+E ++   +  LES  G  M + LVD EGYPR+D+D+  VR  R  II LQ+D K ++ ++E+ L+++HA ++EK          E+    +  ++    P  F K++ +S GSPA  AGL++DD IV FGS+  +N+  L  IGS+VQHS+ K + + V R G+   L L P+ W+G+GLLGCNI+
Sbjct:   13 SQAGVVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNII 219
The following BLAST results are available for this feature:
BLAST of TCONS_00007061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD92.561e-4239.1326S proteasome non-ATPase regulatory subunit 9 OS=... [more]
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