TCONS_00007061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007061
Unique NameTCONS_00007061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007061 ID=TCONS_00007061|Name=TCONS_00007061|organism=Clytia hemisphaerica|type=transcript|length=2509bp
CACCCAttacacgcggttgttttggctgctggctggctggcagtttcctc
caagaatgcactccaaaaatggatggaaaaatggaaacccgaaaattttt
acgtccgaccgactcactttttagacccaacgaggacgcgaaatgaagat
atttgtgattgccgcctaataTAAAAGAATAATAAAAGAATCTCCATTTT
TATATTAGGAAGAGATAAAAGAACATTTGTTGTCTTACTTTATCAACAGT
TTCAAACACTCAAAATGTCCAAATCTTGCAGCCTCATGCAAGTATGTCCA
GCCACCTTTTCTGTGAATATTGATGTTTAATTTTGGGTTTTCAAGAAGGT
ATTTCACACACTCCAAGTGACCATCATAAACAGAAAAATACAATGGTGAT
CTATTGTCATAATCAACATCATTGATGTCTGCTCCATTTTCTAGAAGTAC
TCTAACTGAATCAACATTCCCAACTCGAGAAGATACATGCAATGCAGTCA
TTTGTTGTGCATTTGCTCCATCGACGTATGCTCCATGTTGAACAAGATAC
TCTAAAATGTGGCTTTGTGAGTTGCTTGCAGCTTGGTGAAGTAAAGTTGA
TGATAGATTTCTAAATGCTTGTACTGAAAAGTCATTCTCCAAAATAGATT
TCAAACTAGCTAGGTGTCCATTTGAAACAGCTTTGAACAAAGCATCAAAA
TTGTCAACAACTGAAGGTTTTTCGTCTTTCACCGTTGCAGCCATTTTCGA
GGTctggaaaatgtttgtttttctagCCGTGACACTCGATCACATATTTT
TACTCAAAAGCCCGAAAAAGCTTAGGCTAAAAGCTAAGCttcaaagttga
tatctttAGAGAATCGGACTCTAAGCTTTCCGTCCATCAATATCCAAGAT
GGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTG
AAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAcatGGGAGTAAC
ATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAGCTGATATTGA
TGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATACTTGCAAAGTG
ATTTGAAGCAGCTTTTGGGAAAGATTGAGAAGGGACTTTACAAAATACAT
GCAGATGAACGCGAAAAAATGAAGACCGGAGAATCTGCTCCTCCTAATGT
CAATACTACAGATCAGAATGctgaaccatttttgaagatCGATTTGGTTT
CTGAAGGGTCCCCTGCTGAAAAAGCTGGCTTGAAGCTAGATGATTTGATT
GTACGATTTGGAAGTTTAACTTGTGAGAATTACACTGGATTACAAATGAT
TGGCTCTTTGGTACAACATTCTAAAGAGaaaaatatcgaaatcGCTGTCA
AACGTAATGGAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCA
GGCAGAGGCCTGCTTGGGTGTAATATTGTACTCTACAAGAAGTAATTTAT
TGCGAGTTCCAAGAAATGCCTCTGTCAGTCTTCATTATGTTAGGGAAATG
GGATCACGAAGCTTGAAATTTCACACACGTCACGGGGAAAGTCAACAAAG
AGTTGAAGCATTGAAATTTGCTAAGAATTGTTCCAAACGATTATATCGGG
CATTTGACCTTGCAGAAATGGAATGTTCATTGAACCACGTTACACTCTTG
TGGCCATATGGTAAATGATGAAAGAAATATGaatcaataattatttttag
tcaCATCCAAGGTATTTATTATAAATAGATTTTAAATTATACTAAGTTTC
AGTCAAataaataattataaaaaaagacacaaaaaatgAGATATCGAGTT
TCTTGTTTAataaatgctgacgtcagcacaatTGACAAAATGCTCCTGTT
CACCATGACCCATACCACAGCCTTTAGCATCACATCCCCAAGAGTTGCCA
GTTTTGTACCACCATTGAATCACACAACGTTCACAGGTCAAGTGGGAAGG
TAATTTCAAGTGGATTTTGTGTACATTACGTCCGCTGGTTCGGATTGGGT
ATTTCGTTTGTCCGTTAACCTTTGAATAGAAAAGCGGGCAGTTTGAGACA
ATTCACTTTTTGCATTCACACTAAATTTCTCGAATTTGAGCCGAACGTGC
TTATCACGAGCTATTTCAGAGAATTACAGAGCCTTTCTTTTGTTTACCTA
CTCTTTCCTCTAACTAAAGCTAACCGAACCGAATCCAGATTTCTCTGGTC
TTTAAATTGACTTTTTACAACAGCCTTTGTATGAAAAAATGATAGGTTTC
ACACACggcaaaaacaaaaactcacTTGGCGTAAAAGGACTCCGTTTAAT
TTTCCCTCTTTGTCACCGGAAGTATCCCTGTTGCTGAAATCTCCGATACG
GAATTCGAAGTATCCCAAATGGCTTGCAGTCAATAAGACGTCGAGTTCAA
AGTTTTGTCCACGTCTGTAAGTTTTGCCAATGATTCGGTTTCCATAACGA
CCTCCATCC
Run BLAST on NCBI

protein sequence of TCONS_00007061-protein

>TCONS_00007061-protein ID=TCONS_00007061-protein|Name=TCONS_00007061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MATIKEVKDLVQQKVEVERELDELHSALESHGSNMTDELVDPEGYPRADI
DVLTVRKTRVRIIYLQSDLKQLLGKIEKGLYKIHADEREKMKTGESAPPN
VNTTDQNAEPFLKIDLVSEGSPAEKAGLKLDDLIVRFGSLTCENYTGLQM
IGSLVQHSKEKNIEIAVKRNGKLSNLILTPSTWSGRGLLGCNIVLYKK
Run BLAST on NCBI

transcript from alignment at sc0000073:107338..121785-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007061 ID=TCONS_00007061|Name=TCONS_00007061|organism=Clytia hemisphaerica|type=transcript|length=14448bp|location=Sequence derived from alignment at sc0000073:107338..121785- (Clytia hemisphaerica)
CACCCATTACACGCGGTTGTTTTGGCTGCTGGCTGGCTGGCAGTTTCCTC CAAGAATGCACTCCAAAAATGGATGGAAAAATGGAAACCCGAAAATTTTT ACGTCCGACCGACTCACTTTTTAGACCCAACGAGGACGCGAAATGAAGAT ATTTGTGATTGCCGCCTAATATAAAAGAATAATAAAAGAATCTCCATTTT TATATTAGGAAGAGATAAAAGAACATTTGTTGTCTTACTTTATCAACAGT TTCAAACACTCAAAATGTCCAAATCTTGCAGCCTCATGCAAGTATGTCCA GCCACCTTTTCTGTGAATATTGATGTTTAATTTTGGGTTTTCAAGAAGGT ATTTCACACACTCCAAGTGACCATCATAAACAGAAAAATACAATGGTGAT CTATTGTCATAATCAACATCATTGATGTCTGCTCCATTTTCTAGAAGTAC TCTAACTGAATCAACATTCCCAACTCGAGAAGATACATGCAATGCAGTCA TTTGTTGTGCATTTGCTCCATCGACGTATGCTCCATGTTGAACAAGATAC TCTAAAATGTGGCTTTGTGAGTTGCTTGCAGCTTGGTGAAGTAAAGTTGA TGATAGATTTCTAAATGCTTGTACTGAAAAGTCATTCTCCAAAATAGATT TCAAACTAGCTAGGTGTCCATTTGAAACAGCTTTGAACAAAGCATCAAAA TTGTCAACAACTGAAGGTTTTTCGTCTTTCACCGTTGCAGCCATTTTCGA GGTCTGGAAAATGTTTGTTTTTCTAGCCGTGACACTCGATCACATATTTT TACTCAAAAGCCCGAAAAAGCTTAGGCTAAAAGCTAAGCTTCAAAGTTGA TATCTTTAGAGAATCGGACTCTAAGCTTTCCGTCCATCAATATCCAAGAT GGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTG AAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTAAGTAATTTC TCAATATATTTTACCAATCTAGAAATGTTTTGATTCTTTATTTGTGACAT TTATTTGTCAATCTTATCGAATTAAAGTTTCAAAGGTATTGCTCCACAAA TGTTTGCTATTTTTCTTTCCAAAAGAAACAAGTTGCAGATTTAATGAGCA AAAAAGTACTAGTTAAACTTATTTACTTATTTGGCTAATAACTTATTTTA ACTTATTTCTCTTACAAGAACTTAATTTGGAAGGAACTAATTTTAGTGAA TCAGATGGTAAGGTACAGTCAGGATTAACCGCCCCGGGGGGGCACTCGAT CTGAAAACGACCATACGTTCGGCCCAAAATTTGGCTTCTAAAATCGGACC CTTACAGTGCAGTGAATTACCATGAAAAATCATACCCTTACAGTGCACTT TTTCAAAATTTTTCGCCCGCAAGGGCGAAAATTTTTGCAATTTTCCAAGA AAATGTGGAATTTTTCCTCCAAAATTGACCAATTTTGTGCCAATTTTACC AAAAAATTGGCCTTTTATCACAATTTCCTACCCTTACAGTGCAGTTCAGG TGCAGTTTTGTAATTTCCTACCCTTACAGTGCACTAGCTGAACTATGAAA AACCTACCCTTAAGGGCCGAACGTCTGGTAGGTCATTTACCTTAAGTGCC CCCCCCCCCCGGGTTAACCGCCTAATAGCAATAGGAACAAATTTCTTGAT TTCTAAAATACTCCTTATCTAAGATATAACTACTTATATAGGCATATTTT TTATTCTAAGCTAGCTAGGAACATTTTCTTTCTTCTCCAAATTTTTCATT TTAAAACAAAGTCACATGTTCAAGTTATGACTAATAGATGTAATAATGCA AAGTGGTTTCTTTTTCCAAAAATCAGCACTTTTGGTGGGCGGAAGGGTGG AAAATCTTAGCTTTTGTAAAAAATATCTTAAATAGGAACATTTTAAGGCT CTCTTTACTAAAAAACGGGATTTGATGTGTAAATAGACCATTAATAAGCA GTGGAATCTGTGTGGAAACTTTAAAATGCAATAATTCAATACTGCATTGA TGAATCTTTCTGCACGTGCGTTTGGTTTGGGAACGCGAAACACGAACGCA AACTACCCATGTCTAAACTTTTCAATACATCTCCAGAACTAACAGACTTA CCTTCCCCAAACATTGAAGAAGCCTCTACTAATTAAAGTAAATGAGATAA GATAAGATAAAACCTTAAAATCAACCAGAATTCACAACCTTTCGTCCAAA GCAAAAGACGTGCTTTTCTCGCCGCCATCTTGTTTTAGAATGAGAATTCT AGAGAATTCCATTCGGTTCCAGCTTCCGCGGTCTTTTTTTCATCCAATCA GATCGCGTGATTTCACTTTCGCTTTCTCTAGTCCAATAAGACTGCGGGAT TTGAGTCATGTGACATCTCTATTAAAAAACCTGCGCGAATTAAAATAGAA ATACAGGGGGTCACACTACTGGCTACAGGAACTGAAAGCAAGCAATTAAG GCCAATATTTTTGGTTTTTCTGAAGGACAAAAGGTATAGAAAGCTTTACT GAAAGAGGGATAAGGCTGGGACAATCTATTTAAAAGATATGGACAAGAAA AGGCACTTTTTTGGGTGATAATTAAGATTTTACTCAGAAACTTTAATTCT CTTACCCCCGTCTCGGCCCCCCTGATATGAGCAAGGGAACCATGTTGGCC ACCCCTACTGAAAATTTCAGATCAAAACAAACAANNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNTGGAATAAAAAGATATAGTCAAATCTTGTAGGGTCATTTT TCAAAAAAATTTTGCCAAATTCGATTTTCGCATTTCGCCATTTTACCCTA CGCAAACGCACGTGTCTGAAATTTGAAACACAGTTAGAAAATACCTAAAT GAAAACATAGACAGTTTAGTCACACTAGCGTCCCGCCAAAATATGTATCA AAGATTAATGCTGCGAAAGCGCTACATCGTTTACTTGACTTGCAAGCAAA AAAATGTGCCGCAAAACTACTAAAGGGATGCATGAAAAAATAACCCGGCG CTTTTTGATGAAATTAACATTTTCAAAAACTATGAGAAATTGCCTAAAAT TTGAGCTATAGATGAACAAATTTGAGCCAAGCCAACCTTGAAAACTAATT TGAAGATCAACTTCCCAAGAAAAATATTTACGGGGGAGACGAAACTCACC TAGATCCGCGCACCGCCGGATAGGCTATTTCCCGGAAATTTTGCCTGACC TCAAACACAGACCCATTTACATGTGCGGAATTATTTTTACACCACTTTCC TCGTTTATTTTTGTTGTCAACTGGTTTCTGTCAGAATGCAGACAAGCAAA ATCGAGTCATCTCATATGTAAGCAAACTTACAACGGGGGTTCTGTTTTCT CCTTCTAGCTGTGTTTTGGCATCGATGCAGGATCTTTTTACATCTCATTT TAGAACTTTTCATGTTATTGAGCAATGAAAAATTGAAAAAAATCACTTTT AAAGATCCGAAAAAAACTTTTCCCTGATATAATTTTACATTTTTCAAACA CCTCTACACCTCTGACATCTTTGCCCTTATAAGGACAGCACAGACATTTC TGCTAACTTGATATTTCATCGTTAAGAAAATTGCTGTTTTTGGCAATAAT TGCCATTTTTATTTTAAACACCCAACTGCATTTCCTTTTTTTCTGAAACA GTATAAATTAGCTATATTGTATATAGATAGTCATTAATGATGAAAGCAAT CAAGAAAAAAAGATTGTTTGCCAATTTTAGGGATTCGCAAAACTCAAAAT TAAGTCTTGCCGAACGCAATCGTAATGCCAAACGTAAAATTCTGGGTAAA ATTCGATTGATTCGATTGATATTCGATTACGTTCGATTGACATTCGATTA CTTTCGATTGATGTTCGATTACGTTTGACTGCGTTCGACGGGTGGTCGAT TAAATTAGATTCCAATTTACCTCAATTCCTTTCAATTTCGAGCGCCTCTT ATTAGGGAGGTTAAGTATCGATACGATAGATAAATCAACGCAACGAACGG GCTTTGACACACAACCTGCAGTCATGTGGGACTGCATGATCTGCATTTTC TAGAATCCAGGCTAAAATGATTCACATCATCTTGTTTAACTCTTCAAATG TTGAACAAGAATCAACGTTAATCAACAGAATCAATTAGTCGAACCAGTCG AATGCATGAGCCAACCGAACGTAGTCGAATCAATCGAATCAATCGAACAC AATCGAATCAATCGAATCCAGGCACTAATCGAACGCAATCGAATCAATCG AGAAAATCGCGGTAATATTCGATTGGCATTCGATTGCGTTCGGCAATCGA ATTTCAATCATTCGATTGCGTTCGATTGCGTTCAATTGATTCGGCGTTCG ATTCGTTCGATTGACATCGTCTGGTAATATAAATGAAGACTCACATGATT GGTAAACAAGTGATGGGGGCAGAGGATATATTGGATATTTTGTCCTTGGG GGGGGGGGAGTGGAAAATGATACATCCTTTACCCCCATACTCAAATTTCT TCTGGAAAAACCCAATAGAATATACACTAACAATTCACTTCCTGGAAAAT ATGTGACAAAAGAGACTGACTAGATCCAAAGTTAAGGGGTGGTACAGGAA AGCCCCCCCCCCCAGCTCTGAGTTGCCCCTAAAAGCTGAGTATGAATAGG GTTAAGAATCCAGAGAAGGTGCTGACAACGAGTTAAAAAACATATTTTTT TTTCAGCATGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTA TCCAAGAGCTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCA TTATATGTAAGTTATAAAGTTTTACTCCTTTCTTGCAATACTCTATTTCC TCCATTGAGGGCAGCATTATTAATTAGCTTTCACCTTTAAAATGCCTCAC TCATTAGGTAAAAAGGAGAATTGTTTGTTTTGCTTTTCTTTAAGTTACGA GATAGACGCCTTTAAGTCATGTCGCCTTCTAATAAGTGAAGCACCTAAAG TCACAAAATTAGATACCTTTTTTTGACAACATTTTACATCAGGTTAATTT CTATGTCTGCCTAGGTGAAAAATCACAAGCACAACAGTTACATTTATCAA CCATCAAACCTAGAACATAACATGCATTGTGTTCCTAAACTTATCTTTTG ATAATCATTAAATATCTAGATATTCTTTCTTTTTGCACTCAACAGACTTG CAAAGTGATTTGAAGCAGCTTTTGGGAAAGATTGAGAAGGGACTTTACAA AATACATGCAGATGAACGCGAAAAAATGAAGACCGGAGAATCTGCTCCTC CTAATGTCAATACTACAGATCAGAGTAAGTTCCATTGTTTTAGTTTGAAC TAGACCAATTTTTCAACCGTTCGAGAGGCTTTGTCAGTATTGTTAGTGGC TTTTAATTGAATTATTTCTAAAAGAAATAGCTTAAGTACAGACAAGTTGA ACAACTTTTAATTCCTACATGCTTCTCCGTGGTGTTGCTCTTCAGACATT TAAAATACAATGTGTAATTTTTTAATAATAATGTTCATCATGTAGATGCT GAACCATTTTTGAAGATCGATTTGGTTTCTGAAGGGTCCCCTGCTGAAAA AGCTGTAAGTACACTGTACACTCCATAACTTTTACCCATTTTGATCACAA TGAACTAGCCAGATAAAATGAAAGGAGCGACATGAAATTTATGAACAATT TCATGAACATGAAATTTTCTATATCATGATTATTGAATCCCCTAGGATTC CAAAATACACCTTTTCGACCGTAGTCGCCAATTGCCGCGCGGGCATTTTT TTGTCCGCTTTATCCCACTAAAACCGTCCCAGTCCTTTTTTCGCACCTAT AGACAATAGAAAAATGTGTCAAAAAAGGATTGGATCGAGTTTAGTGGGAT AAAAGTGGCACGCGCCTGACCGTGCGACTACTGTCGAAAAGGTGTATTGT TCGGATCGCTTAAAACTCATTTCTGCAAATGAAAAATTCGACCCCTTTGA GATTAATTAATAATTACCCATTACATCACAAACCGATAGAAAATTTAGTT TTAACTATTGTAATAGAATAATCAACTAAGTCTCGAAACTAAAAAAACTA AAAATTGAACGTTCAAATGTCCAATTTTCAGTATATTTTATTTACTTTAA TAATCAGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTAA CTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACAT TCTAAAGAGGTACATCTTTTGTCCGGCTATTTTTCTTTAAATTTGTGCTT GTGTGGTGTGGAAGTTTAAAAATGTTGTGTAAGCAAACGATAGGACATTA CATTAAATGATATCCTTTAATGATTACTCTCCTTTTCAAATTAAAGTACT CAAGTCTCAATTTTTAAAATTTATTTCGTGATATCTTAGAATGAAATTCA AAAGAAAGAGTTTGGTTTGATTCTCTAACATGTCTTTCACTCTTTAGAAA AATATCGAAATCGCTGTCAAACGTAATGGAAAACTGTCAAATCTTATATT GACACCTTCGACTTGGTCAGGCAGAGGCCTGCTTGGGTAAGTGAATTATT TTGCCTTCTTCAGGTTGTTATTAGAAAGACGGCGGTAATGACGAGAAAAG CGAGAAGTAATCCAGAAAAAAAAAAGATATATACCTAGAAATAAGTGAGA ATATACCTAGAAATAGGCGAGAATATACCTAGAAATAAGCGAGAATACAC CTAGAAAAAACCGAGAACAAACCTAGAAAAAACCGAGAAAAAACCGAGAA TATACCTAGAAAAAAACGAGAAAATATCCAGAAAAAAACGAGAAATAAAC CTAGAAAAAACCGAGAAAAAACCGAGAATATACCTAGAAAAAAACGAGAA AATATCCAGAAAAAAACGAGAAATAAACCTAGAAAAAACCGAGAACGAAC CTAGAAAAACCGAGAATATAACTAGAAAAAACCGAGAAAAAACCGAGAAT ATACCTAGAAAAAAACGAGAAAATATCCAGAAAAAAACGAGAAATAAACC TAGAAAAACCGAGAATAAACCTAGAAAAAAACGAGAAGACACCTAGAAAA AACTGAGAATATACCTAGAAAAAATCGAGAATATACCTAGAAAAAACTGA GAATATACCTAGAAAAAAACGAGAAGACACCTAGAAAAAACTGAGAATAT ACCTAGAAAAAATCGAGAATATACCTAGAAAAAACTGAGAATATACCTAG AAAAAAACGAGAAGACACCTAGAAAAAACTGAGAATATACCTAGAAAAAA TCGAGAATATACCTAGAAAAAACTGAGAATATACCTAGAAAAAACTGAGA ATATACCTAGAAAAAAACGAGAAAATATCCAGAAAAAAACGAGAAATAAA CCTAGAAAAAACCGAGAATATACCTAGAAAAAAATAAGAATATACCTAGA AAAAAACGAGAAAATATCCAGAAAAAAAACGAGAAATAAACCTAGAAAAA ACTGAGAATATACCTAGAAAAAACCGAGAATATACCTAGAAAAAACCGAG AATATACCTAGAAAAAACCGAGAATATACCTAGAAAAAACCGAGAATATA CCTAGAAAAAACCGAGGATATACCNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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AAAATACTATACAAATAGCAGCCATACCTGTAACATTTCACGATTTGACT TCTATCATTTGTCAGCGAACCATAAATTTTTTGGATTGGTGTATAAATGA TAATTTGTTGATTAATTCTTTCGAATAGTTTTTGGTATTCTTCAAAAATG GACATGGTGGTCGTGATCTTCTTTCCTTGTCCAAGTGAAGTTTGTTAGGT TCAAATGATAATGCTTTTCTCTGCTATTTGTATAGTATTTTTTTCTAGGT TTTTCAGGAAAATTCTAGGTTATTTTTTAATTCTTGTGTTCACTTTGTCA ACTTCTGTCTCAGTTAAAAACTATAGAATATTATGAGAGAAAATTACCAT TCCAATAGTTTTAAACTAAAAATAGGCACAAAAATAATTTAACCACCATT TTAGAATTTTTGACCAAATTGGTTTCATGAAAATTTAACTCGCACCTAAC TCGTCAGTTTAAGGTGCACCATAAATTGACGAGTTAATAAACTCGTAAGA TTAAGGTGCACCATAAATTGACGAGTTAATTAACTCGTAAGATTATGGTG CACCATAAATTGAAGAGTTAAATTATCTACTTGTGACGTCATTATTTCCC ATTGATGACGTCACATTTAACGTAACTCGTGTTTTTTGTAACTCGTGTTT TTGGACCTACCCCGGTGGGCTGTAGGTCCTATAAATTAACCTCTGTTCGT CCGTTCGTTCGTCCGTTCGTTCGTCCGTTCGTTACTAGCTTTTCTCNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACTCG AATTTTCATCTTTAGCTTTTTCTGATTTTTTGCAGAAAGATGCGTATTTG CAATGCTCAAAACATGGCCGAGTTCGATTCTTGAGAAAAAAATTTTTCCG GTTGAAAATGCCGGAAATCGCCGTCTTTGCAGATTTTCATTATATGTTTC CCTTGTATTTCTATGTTCTTCACACAAAAACATTATTGATAACAATGCTC ACCATCAAGCATGATTCAATTATAAAACTGATTTTTGCGACCAGAACTTT CTATTAATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNTTCGCTAAACGATATATTTTCTGACTGATTTTTTTCTCCTCGCAT TGCTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTT TAACTCGTGTTTTCCGAGCCTCGAAATAAGTGAGAAATACCCAGAAAAAA ACAAGAATATACCTAGAAAAAACAAAAGAAAACCAGAACAAACCGAGAAT TAACCGAGAAAAAAACGAGATTAAACCGAGAAAAAAGCGAGAATATACCC AGAAAAAATGAGAATCGAACCAGAAATTTGAAAATTATTAGGTCAGGTAT TTTCATTAAATTTCAATGTAATAAAAGATCACAATAAAATATGCTCTTTA TTTCAGGTGTAATATTGTACTCTACAAGAAGTAATTTATTGCGAGTTCCA AGAAATGCCTCTGTCAGTCTTCATTATGTTAGGGAAATGGGATCACGAAG CTTGAAATTTCACACACGTCACGGGGAAAGTCAACAAAGAGTTGAAGCAT TGAAATTTGCTAAGAATTGTTCCAAACGATTATATCGGGCATTTGACCTT GCAGAAATGGAATGTTCATTGAACCACGTTACACTCTTGTGGCCATATGG TAAATGATGAAAGAAATATGAATCAATAATTATTTTTAGTCACATCCAAG GTATTTATTATAAATAGATTTTAAATTATACTAAGTTTCAGTCAAATAAA TAATTATAAAAAAAGACACAAAAAATGAGATATCGAGTTTCTTGTTTAAT AAATGCTGACGTCAGCACAATTGACAAAATGCTCCTGTTCACCATGACCC ATACCACAGCCTTTAGCATCACATCCCCAAGAGTTGCCAGTTTTGTACCA CCATTGAATCACACAACGTTCACAGGTCAAGTGGGAAGGTAATTTCAAGT GGATTTTGTGTACATTACGTCCGCTGGTTCGGATTGGGTATTTCGTTTGT CCGTTAACCTTTGAATAGAAAAGCGGGCAGTTTGAGACAATTCACTTTTT GCATTCACACTAAATTTCTCGAATTTGAGCCGAACGTGCTTATCACGAGC TATTTCAGAGAATTACAGAGCCTTTCTTTTGTTTACCTACTCTTTCCTCT AACTAAAGCTAACCGAACCGAATCCAGATTTCTCTGGTCTTTAAATTGAC TTTTTACAACAGCCTTTGTATGAAAAAATGATAGGTTTCACACACGGCAA AAACAAAAACTCACTTGGCGTAAAAGGACTCCGTTTAATTTTCCCTCTTT GTCACCGGAAGTATCCCTGTTGCTGAAATCTCCGATACGGAATTCGAAGT ATCCCAAATGGCTTGCAGTCAATAAGACGTCGAGTTCAAAGTTTTGTCCA CGTCTGTAAGTTTTGCCAATGATTCGGTTTCCATAACGACCTCCATCC

Coding sequence (CDS) from alignment at sc0000073:107338..121785-

>TCONS_00007061 ID=TCONS_00007061|Name=TCONS_00007061|organism=Clytia hemisphaerica|type=CDS|length=4179bp|location=Sequence derived from alignment at sc0000073:107338..121785- (Clytia hemisphaerica)
GTGTAATATTGTACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCA
AACGTAATGGAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCA
GGCAGAGGCCTGCTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTT
GGAAGTTTAACTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTT
GGTACAACATTCTAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGT
TTCTGAAGGGTCCCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCA
GCTTTTGGGAAAGATTGAGAAGGGACTTTACAAAATACATGCAGATGAAC
GCGAAAAAATGAAGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACA
GATCAGACATGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTT
ATCCAAGAGCTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGC
ATTATATATGGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAG
TTGAAGTTGAAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTG
TAATATTGTACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAAC
GTAATGGAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGC
AGAGGCCTGCTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGA
AGTTTAACTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGT
ACAACATTCTAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTC
TGAAGGGTCCCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCT
TTTGGGAAAGATTGAGAAGGGACTTTACAAAATACATGCAGATGAACGCG
AAAAAATGAAGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGAT
CAGACATGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTATC
CAAGAGCTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATT
ATATATGGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTG
AAGTTGAAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAA
TATTGTACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTA
ATGGAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGA
GGCCTGCTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGT
TTAACTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACA
ACATTCTAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGA
AGGGTCCCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTT
GGGAAAGATTGAGAAGGGACTTTACAAAATACATGCAGATGAACGCGAAA
AAATGAAGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAG
ACATGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAA
GAGCTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATA
TATGGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAG
TTGAAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAATAT
TGTACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTAATG
GAAAACTGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGAGGC
CTGCTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTA
ACTTGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACA
TTCTAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGAAGG
GTCCCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTTGGG
AAAGATTGAGAAGGGACTTTACAAAATACATGCAGATGAACGCGAAAAAA
TGAAGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAGACA
TGGGAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAG
CTGATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATAT
GGCGACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTG
AAAGGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAATATTGT
ACTCTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTAATGGAA
AACTGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGAGGCCTG
CTTGGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTAACT
TGTGAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACATTC
TAAAGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGAAGGGTC
CCCTGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTTGGGAAA
GATTGAGAAGGGACTTTACAAAATACATGCAGATGAACGCGAAAAAATGA
AGACCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAGACATGG
GAGTAACATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAGCTG
ATATTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATATGGC
GACGATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTGAAA
GGGAATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAATATTGTACT
CTACAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTAATGGAAAAC
TGTCAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGAGGCCTGCTT
GGGGCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTAACTTGT
GAGAATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACATTCTAA
AGAGATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGAAGGGTCCCC
TGCTGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTTGGGAAAGAT
TGAGAAGGGACTTTACAAAATACATGCAGATGAACGCGAAAAAATGAAGA
CCGGAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAGACATGGGAG
TAACATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAGCTGATA
TTGATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATATGGCGAC
GATAAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTGAAAGGG
AATTGGACGAGCTACATTCTGCTTTAGAATCAGTGTAATATTGTACTCTA
CAAGAAGTAAAAAAATATCGAAATCGCTGTCAAACGTAATGGAAAACTGT
CAAATCTTATATTGACACCTTCGACTTGGTCAGGCAGAGGCCTGCTTGGG
GCTTGAAGCTAGATGATTTGATTGTACGATTTGGAAGTTTAACTTGTGAG
AATTACACTGGATTACAAATGATTGGCTCTTTGGTACAACATTCTAAAGA
GATGCTGAACCATTTTTGAAGATCGATTTGGTTTCTGAAGGGTCCCCTGC
TGAAAAAGCTACTTGCAAAGTGATTTGAAGCAGCTTTTGGGAAAGATTGA
GAAGGGACTTTACAAAATACATGCAGATGAACGCGAAAAAATGAAGACCG
GAGAATCTGCTCCTCCTAATGTCAATACTACAGATCAGACATGGGAGTAA
CATGACAGATGAACTGGTTGACCCAGAGGGTTATCCAAGAGCTGATATTG
ATGTTCTTACTGTTCGAAAAACAAGAGTACGCATTATATATGGCGACGAT
AAAAGAAGTGAAAGACCTCGTGCAGCAAAAAGTTGAAGTTGAAAGGGAAT
TGGACGAGCTACATTCTGCTTTAGAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003948XLOC_003948Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007061-exon-sc0000073-1575043694:120798..121785TCONS_00007061-exon-sc0000073-1575043694:120798..121785Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:116330..116429TCONS_00007061-exon-sc0000073-1575043694:116330..116429Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:115812..115940TCONS_00007061-exon-sc0000073-1575043694:115812..115940Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:115532..115590TCONS_00007061-exon-sc0000073-1575043694:115532..115590Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:114877..114978TCONS_00007061-exon-sc0000073-1575043694:114877..114978Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:114550..114638TCONS_00007061-exon-sc0000073-1575043694:114550..114638Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1575043694:107338..108379TCONS_00007061-exon-sc0000073-1575043694:107338..108379Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:120798..121785TCONS_00007061-exon-sc0000073-1510915933:120798..121785Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:116330..116429TCONS_00007061-exon-sc0000073-1510915933:116330..116429Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:115812..115940TCONS_00007061-exon-sc0000073-1510915933:115812..115940Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:115532..115590TCONS_00007061-exon-sc0000073-1510915933:115532..115590Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:114877..114978TCONS_00007061-exon-sc0000073-1510915933:114877..114978Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:114550..114638TCONS_00007061-exon-sc0000073-1510915933:114550..114638Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1510915933:107338..108379TCONS_00007061-exon-sc0000073-1510915933:107338..108379Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:120798..121785TCONS_00007061-exon-sc0000073-1491911889:120798..121785Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:116330..116429TCONS_00007061-exon-sc0000073-1491911889:116330..116429Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:115812..115940TCONS_00007061-exon-sc0000073-1491911889:115812..115940Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:115532..115590TCONS_00007061-exon-sc0000073-1491911889:115532..115590Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:114877..114978TCONS_00007061-exon-sc0000073-1491911889:114877..114978Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:114550..114638TCONS_00007061-exon-sc0000073-1491911889:114550..114638Clytia hemisphaericaexon
TCONS_00007061-exon-sc0000073-1491911889:107338..108379TCONS_00007061-exon-sc0000073-1491911889:107338..108379Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007061-proteinTCONS_00007061-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:107338..121785 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.5012 14.3719 20.66 22.8208 6.73728 5.36179 8.37801 9.85472 10.7634 8.1533 6.13786 7.24445 5.60941 4.84361 4.6797 5.34695 7.59478 6.70695 4.20354 4.05546 6.4932 5.5692 8.90254 7.33387 13.344 13.522 6.09711 4.78727 6.48372 6.07544
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
BLAST of TCONS_00007061 vs. Swiss-Prot (Human)
Match: PSMD9 (26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.561e-42
Identity = 81/207 (39.13%), Postives = 130/207 (62.80%), Query Frame = 2
Query:  887 SISKMATIKEVKDLVQQKVEVERELDELHSALESH-GSNMTDELVDPEGYPRADIDVLTVRKTRVRIIYLQSDLKQLLGKIEKGLYKIHADEREKMKTG------ESAPPNVNTTDQNAEP--FLKIDLVSEGSPAEKAGLKLDDLIVRFGSLTCENYTGLQMIGSLVQHSKEKNIEIAVKRNGKLSNLILTPSTWSGRGLLGCNIV 1480
            S + + T+ +V++L+++K E+E ++   +  LES  G  M + LVD EGYPR+D+D+  VR  R  II LQ+D K ++ ++E+ L+++HA ++EK          E+    +  ++    P  F K++ +S GSPA  AGL++DD IV FGS+  +N+  L  IGS+VQHS+ K + + V R G+   L L P+ W+G+GLLGCNI+
Sbjct:   13 SQAGVVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNII 219          
The following BLAST results are available for this feature:
BLAST of TCONS_00007061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD92.561e-4239.1326S proteasome non-ATPase regulatory subunit 9 OS=... [more]
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