TCONS_00007052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007052
Unique NameTCONS_00007052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1437

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007052 ID=TCONS_00007052|Name=TCONS_00007052|organism=Clytia hemisphaerica|type=transcript|length=1437bp
cgagatggagtttttacaagctcttatttgatttggttggtcgttaacca
NACAACAATAATAAACAACACTTGTCGGATGTCGGCGATCAACGACGTCG
CAACTCGTCCTCTTCCTCAGCATCCAACCTTCTTACGTCACCACCACCTC
CCATTGCCGAGCAACACAATCAATACAACATGTCGGCgcaacagcaacaa
caaaacTCACAGTCTGCACAACAACAACAAGCGCCCCAACAAAAGCTTTC
ACACGATGTCAATCTTAACACATCGCTATCAACAAGTACTTTTCAGCAAG
AACTACAGATGCGCGTTCAACATGAGAAAGAGATGCGACTGAAACAtgaa
caaaaacaacaacaacaacaaaagatgCAACATCAGCAACAAGCTGCCCG
ACAACAAACACAACTTCCTAAACAACAGAACACTTCTATtcaacaacaac
agcagcagCAGCAGGTGTTACAACAACATCAAATGCAACAACAAAACGAA
CAACGCCATCAACACCACCCTCAACAAAACATCCCGCCCTCTCAACAAAA
CATTCCACCGTCTCAACAAAATATTCCACCGTCTCAACAACAATCAATGC
ATGATCAACATCCGTTCCAAGACTACCAACGACAGCAACAACTTCAAGTG
CAACAATCTCATCAcgctcaacaacaacaaatgtacaaccaacattttct
tcaacaacagcaacaactcAGACAACAGCAACACTTACAACAAAGACAAT
ACAACACGACCAACATGTCGCAACAACAAATGGGTGCTCATGCTCAGCAA
CAGTCGCAACAAATGCCTCTTTCTCATCAACAAATACCGATGGGAAGTGC
TCCGTCTAACGTTCCAGGGCCGATGGGAAGTGCTCCGTCTAACGTTCCAG
GGCCGATGGGAGGTGCTCCCTCTAACGTTCAAGGGATGCAACCTAATCAA
CCGAACTCCATGAATCCCAACCAACAGAAGAAAGGACTTTCTCTCACGCG
TGAACAAATGTTAGCAGCGCAAGAGATGTTTCGATCAGCGAATACCGTGA
CACGCGCGGAAAAAGCTCTCATACTTGGCTTCATGGCTGGTGCTAGAGAG
AATCCATTTCCACAACAAGGTGCAGTGATTACCATCAAGTTGAGTGAAGA
AATGATCCCTCAAGGAGAACAACAAGTTTTGGTTGAAATGTTATTTGAAA
TGAACTATGATACCGGTCATTGGCGCAGGTTGAAACGAACTCGTGTTATT
CAACAAAACACTCCAAATTGAGAGTGCAATTGATATTTGTAAATAATTCT
TTCTTGATAATGGAGAAAAACAGAAACGTTGCTCTAAGATATATAACTTT
TCGTATAACTTTTCCACGAATTATTCCAGTGAGATGTTTATCAGGGGGAT
TAGGGTCAGAATTTTCCGGAAAAATAAATAACTCGGC
Run BLAST on NCBI

transcript from alignment at sc0000073:54191..60341-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007052 ID=TCONS_00007052|Name=TCONS_00007052|organism=Clytia hemisphaerica|type=transcript|length=6151bp|location=Sequence derived from alignment at sc0000073:54191..60341- (Clytia hemisphaerica)
CGAGATGGAGTTTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTAACCA
NACAACAATAATAAACAACACTTGTCGGATGTCGGCGATCAACGACGTCG
CAACTCGTCCTCTTCCTCAGCATCCAACCTTCTTACGTCACCACCACCTC
CCATTGCCGAGCAACACAATCAATACAACATGTCGGCGCAACAGCAACAA
CAAAACTCACAGTCTGCACAACAACAACAAGCGCCCCAACAAAAGCTTTC
ACACGATGTCAATCTTAACACATCGCTATCAACAAGTACTTTTCAGCAAG
AACTACAGGTCAGCTTTCTATTGAAGATCATCACCATCATCTCAACTACA
ATCAGCGTCATAAAATTTGATACAAAGGGGGAACTCCCTCAAAATTTTAA
AACCGCAAGTGATTTAAATAAATTACGGTTGGAAAGCAGACTTTTAACTC
TTACAGCCTGAGGATCTCAGGATTCAAAAGCTCAAAATTTTTCCAATTAG
GCTGGGAGTAAAGCCTAGAAGTCACAAAATCCCTCCAAAATCGAAATATT
CAATGTAATAAAGTGGAAGTACTTAAAACACAATTCTCAACCGACGTTTA
AATACTGAAAAACGTTAAAATACACAAAAATCTCAATATATTCGACACCG
ATTGTGAGGGTCATGCTTTTTTGATTTCTTTTGTACCTCTTTTCTCATGA
CTTTATGAAGGTTTATTTTCTCTAGAATAACAAGACTTTTCTATAAAGTA
AAGTTGTTAAACAGCATTGTATTGAAAGTTTGGCATTGAATTCGTTTAGC
TGACTTTCATTTTTTTTTCTTTTTCGCCAACTCAGATGCGCGTTCAACAT
GAGAAAGAGATGCGACTGAAACATGAACAAAAACAACAACAACAACAAAA
GATGCAACATCAGCAACAAGCTGCCCGACAACAAACACAACTTCCTAAAC
AACAGAACACTTCTATTCAACAACAACAGCAGCAGCAGCAGGTGTTACAA
CAACATCAAATGCAACAACAAAACGAACAACGCCATCAACACCACCCTCA
ACAAAACATCCCGCCCTCTCAACAAAACATTCCACCGTCTCAACAAAATA
TTCCACCGTCTCAACAACAATCAATGCATGATCAACATCCGTTCCAAGAC
TACCAACGACAGCAACAACTTCAAGTGCAACAATCTCATCACGCTCAACA
ACAACAAATGTACAACCAACATTTTCTTCAACAACAGCAACAACTCAGAC
AACAGCAACACTTACAACAAAGACAATACAACACGACCAACATGTCGCAA
CAACAAATGGGTGCTCATGCTCAGCAACAGTCGCAACAAATGCCTCTTTC
TCATCAACAAATACCGATGGGAAGTGCTCCGTCTAACATTCCAGGGCCGA
TGGGAAGTGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCAGCAGCAGGTGT
TACAACAACATCAAATGCAACAACAAAACGAACAACGCCATCAACACCAC
CCTCAACAAAACATCCCGCCCTCTCAACAAAACATTCCACCGTCTCAACA
AAATATTCCACCGTCTCAACAACAATCAATGCATGATCAACATCCGTTCC
AAGACTACCAACGACAGCAACAACTTCAAGTGCAACAATCTCATCACGCT
CAACAACAACAAATGTACAACCAACATTTTCTTCAACAACAGCAACAACT
CAGACAACAGCAACACTTACAACAAAGACAATACAACACGACCAACATGT
CGCAACAACAAATGGGTGCTCATGCTCAGCAACAGTCGCAACAAATGCCT
CTTTCTCATCAACAAATACCGATGGGAAGTGCTCCGTCTAACATTCCAGG
GCCGATGGGAAGTGCTCCGTCTAACATTCCAGGGCCGATGGGAAGTGCTC
CGTCTAACGTTCCAGGGCCGATGGGAAGTGCTCCGTCTAACGTTCCAGGG
CCGATGGGAAGTGCTCCGTCTAACGTTCCAGGGCCGATGGGAGGTGCTCC
CTCTAACGTTCAAGGGATGCAACCTAATCAACCGAACTCCATGAATCCCA
ACCAACAGAAGAAAGGACTTTCTCTCACGGTAATCTTTATTCGCAAAGTT
TAGCCTTTCTTTACATATTTACTACTTGTTAGGCTCAACCAAGACCACGT
CACTCTCGGACTAATAGGGACACTTTCTATTCAACAGCCATTCCAGAACA
ATCCAAGAATGCAGTCACTTCTACTTTGGACAACGTTCTTAGTCACCAAT
AGTTTCTGCTGAAATAGCAATTAGACACTTATTCTATCGCGACTTCGGAA
ATGTCAGTGTCATTTATGTCAGACACAGTAGCTAGTACCTTGACCACCAA
CCGAGTTTTATCCAAACTGTCCAACTCCAATAGGATATCAGTGGTGCTTG
TTGGCGCATGCCTACATTCGCATCAGCCTGCACACATTAAATTCAGCCTC
ATCTGGTTAATCTAATGTAGGATCAGACAATTTCCATCTACTCTTTTACA
GCGTGAACAAATGTTAGCAGCGCAAGAGATGTTTCGATCAGCGAATACCG
TGACACGCGCGGAAAAAGCTCTCATACTTGGCTTCATGGCTGGTGCTAGA
GGTAAGGCAAACCTTTTGCTCTCACATCCTTCCTTTTTTTGGGATTTTTA
TTTCGCAAACTTATTCTAAATCCAGATAAAGTCTGTTCCAAAAAGTTCCA
AAAATATTGGCAGTCCGCACATTTCCATAGGAAAAAAAATCGAAATTTGG
AGAGTTTGGAAGATAATTTTGAGTGGATGGTTTTAAGGGTTTAAAAGTTT
TAAGAAGAATAAACCAGCCGAGGCTGGAAGGTCAGCCAATAGAGCTTAGC
TAGATAGCTTTAATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAAAATGAAGATTTTTTCTACTGAACCAATATTCTTAAATT
TTACACTTTTCTGAATCTTCGCTGTATTCAGAAGGTGCAGTGAAAGTCGC
GAAAGTTTTTCCCCCTAATGTATTTTCAATCATCAAAGTTAAAATTCAGG
TAAGTTTAAGTCCGGCATATATTCTTTCAAGTAGAAAAATCCTCATTCTT
TTCTTCTTTTTCGAAAAAATAATCCACTCAAAATTACTCTACCATTTTCC
CTTCATCAACAGTAATGTGTAAAGTGTCAACCGGACATTCAATGTTTCTG
AAACAAGACCTTATTCTCTTCCCTTATTTTTCTGACAAATTAAGATATGT
TTTCTTCATAAAAGGGTGGATTCAAAGAAGTTACTTTTTATGATCAGAGC
CATACAACAGGAGTATATGAAATGATCAACCGGATTTCTTTCTTTCTTTT
TCTGTACACCAGAGAATCCATTTCCACAACAAGGTGCAGTGATTACCATC
AAGTTGAGTGAAGAAATGATCCCTCAAGGAGAACAACAAGTTTTGGTTGA
AATGTTATTTGAAATGAACTATGATACCGGTCATTGGCGCAGGTTGAAAC
GAACTCGTGTTATTCAACAAAACACTCCAAATTGAGAGTGCAATTGATAT
TTGTAAATAATTCTTTCTTGATAATGGAGAAAAACAGAAACGTTGCTCTA
AGATATATAACTTTTCGTATAACTTTTCCACGAATTATTCCAGTGAGATG
TTTATCAGGGGGATTAGGGTCAGAATTTTCCGGAAAAATAAATAACTCGG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003946XLOC_003946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007052-exon-sc0000073-1575043694:60034..60341TCONS_00007052-exon-sc0000073-1575043694:60034..60341Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1575043694:58955..59506TCONS_00007052-exon-sc0000073-1575043694:58955..59506Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1575043694:57663..57800TCONS_00007052-exon-sc0000073-1575043694:57663..57800Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1575043694:57141..57240TCONS_00007052-exon-sc0000073-1575043694:57141..57240Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1575043694:54191..54529TCONS_00007052-exon-sc0000073-1575043694:54191..54529Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1510915933:60034..60341TCONS_00007052-exon-sc0000073-1510915933:60034..60341Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1510915933:58955..59506TCONS_00007052-exon-sc0000073-1510915933:58955..59506Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1510915933:57663..57800TCONS_00007052-exon-sc0000073-1510915933:57663..57800Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1510915933:57141..57240TCONS_00007052-exon-sc0000073-1510915933:57141..57240Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1510915933:54191..54529TCONS_00007052-exon-sc0000073-1510915933:54191..54529Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1491911889:60034..60341TCONS_00007052-exon-sc0000073-1491911889:60034..60341Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1491911889:58955..59506TCONS_00007052-exon-sc0000073-1491911889:58955..59506Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1491911889:57663..57800TCONS_00007052-exon-sc0000073-1491911889:57663..57800Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1491911889:57141..57240TCONS_00007052-exon-sc0000073-1491911889:57141..57240Clytia hemisphaericaexon
TCONS_00007052-exon-sc0000073-1491911889:54191..54529TCONS_00007052-exon-sc0000073-1491911889:54191..54529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:54191..60341 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.75178	4.84776	0.00833637	0.44428	1.73833	1.00688	4.79667	0.483735	0.0766966	1.88047	2.16386	0.568894	2.35685	1.22758	0.375303	2.97461	1.03953	1.51429	3.94719	0.215219	1.0653	0.00907084	3.10529	2.79285	9.29254	8.40191	0.665969	0.110496	2.97946	1.94991
Blast
[Close]
BLAST of TCONS_00007052 vs. Swiss-Prot (Human)
Match: NELFA (Negative elongation factor A OS=Homo sapiens GN=NELFA PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 9.946e-29
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:  978 KKGLSLTREQMLAAQEMFRSANTVTRAEKALILGFMAGARENPFPQQGAVITIKLSE--EMIP----QGEQQVLVEMLFEMNYDTGHWRRLKRTR 1244
            KK LSLTREQM AAQEMF++AN VTR EKALILGFMAG+RENP  +QG VI IKLSE  E +P    QG   +LV+ +FEMNY TG W R K+ +
Sbjct:  428 KKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYK 522
The following BLAST results are available for this feature:
BLAST of TCONS_00007052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NELFA9.946e-2964.21Negative elongation factor A OS=Homo sapiens GN=NE... [more]
back to top