TCONS_00007051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007051
Unique NameTCONS_00007051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007051 ID=TCONS_00007051|Name=TCONS_00007051|organism=Clytia hemisphaerica|type=transcript|length=1410bp
caNACAACAATAATAAACAACACTTGTCGGATGTCGGCGATCAACGACGT
CGCAACTCGTCCTCTTCCTCAGCATCCAACCTTCTTACGTCACCACCACC
TCCCATTGCCGAGCAACACAATCAATACAACATGTCGGCgcaacagcaac
aacaaaacTCACAGTCTGCACAACAACAACAAGCGCCCCAACAAAAGCTT
TCACACGATGTCAATCTTAACACATCGCTATCAACAAGTACTTTTCAGCA
AGAACTACAGATGCGCGTTCAACATGAGAAAGAGATGCGACTGAAACAtg
aacaaaaacaacaacaacaacaaaagatgCAACATCAGCAACAAGCTGCC
CGACAACAAACACAACTTCCTAAACAACAGAACACTTCTATtcaacaaca
acagcagcagCAGCAGGTGTTACAACAACATCAAATGCAACAACAAAACG
AACAACGCCATCAACACCACCCTCAACAAAACATCCCGCCCTCTCAACAA
AACATTCCACCGTCTCAACAAAATATTCCACCGTCTCAACAAAATATTCC
ACCGTCTCAACAACAATCAATGCATGATCAACATCCGTTCCAAGACTACC
AACGACAGCAACAACTTCAAGTGCAACAATCTCATCAcgctcaacaacaa
caaatgtacaaccaacattttcttcaacaacagcaacaactcAGACAACA
GCAACACTTACAACAAAGACAATACAACACGACCAACATGTCGCAACAAC
AAATGGGTGCTCATGCTCAGCAACAGTCGCAACAAATGCCTCTTTCTCAT
CAACAAATACCGATGGGAAGTGCTCCGTCTAACGTTCCAGGGCCGATGGG
AAGTGCTCCGTCTAACGTTCCAGGGCCGATGGGAAGTGCTCCCTCTAACG
TTCAAGGGATGCAACCTAATCAACCGAACTCCATGAATCCCAACCAACAG
AAGAAAGGACTTTCTCTCACGCGTGAACAAATGTTAGCAGCGCAAGAGAT
GTTTCGATCAGCGAATACCGTGACACGCGCGGAAAAAGCTCTCATACTTG
GCTTCATGGCTGGTGCTAGAGAGAATCCATTTCCACAACAAGGTGCAGTG
ATTACCATCAAGTTGAGTGAAGAAATGATCCCTCAAGGAGAACAACAAGT
TTTGGTTGAAATGTTATTTGAAATGAACTATGATACCGGTCATTGGCGCA
GGTTGAAACGAACTCGTGTTATTCAACAAAACACTCCAAATTGAGAGTGC
AATTGATATTTGTAAATAATTCTTTCTTGATAATGGAGAAAAACAGAAAC
GTTGCTCTAAGATATATAACTTTTCGTATAACTTTTCCACGAATTATTCC
AGTGAGATGTTTATCAGGGGGATTAGGGTCAGAATTTTCCGGAAAAATAA
ATAACTCGGC
Run BLAST on NCBI

transcript from alignment at sc0000073:54191..60293-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007051 ID=TCONS_00007051|Name=TCONS_00007051|organism=Clytia hemisphaerica|type=transcript|length=6103bp|location=Sequence derived from alignment at sc0000073:54191..60293- (Clytia hemisphaerica)
CANACAACAATAATAAACAACACTTGTCGGATGTCGGCGATCAACGACGT
CGCAACTCGTCCTCTTCCTCAGCATCCAACCTTCTTACGTCACCACCACC
TCCCATTGCCGAGCAACACAATCAATACAACATGTCGGCGCAACAGCAAC
AACAAAACTCACAGTCTGCACAACAACAACAAGCGCCCCAACAAAAGCTT
TCACACGATGTCAATCTTAACACATCGCTATCAACAAGTACTTTTCAGCA
AGAACTACAGGTCAGCTTTCTATTGAAGATCATCACCATCATCTCAACTA
CAATCAGCGTCATAAAATTTGATACAAAGGGGGAACTCCCTCAAAATTTT
AAAACCGCAAGTGATTTAAATAAATTACGGTTGGAAAGCAGACTTTTAAC
TCTTACAGCCTGAGGATCTCAGGATTCAAAAGCTCAAAATTTTTCCAATT
AGGCTGGGAGTAAAGCCTAGAAGTCACAAAATCCCTCCAAAATCGAAATA
TTCAATGTAATAAAGTGGAAGTACTTAAAACACAATTCTCAACCGACGTT
TAAATACTGAAAAACGTTAAAATACACAAAAATCTCAATATATTCGACAC
CGATTGTGAGGGTCATGCTTTTTTGATTTCTTTTGTACCTCTTTTCTCAT
GACTTTATGAAGGTTTATTTTCTCTAGAATAACAAGACTTTTCTATAAAG
TAAAGTTGTTAAACAGCATTGTATTGAAAGTTTGGCATTGAATTCGTTTA
GCTGACTTTCATTTTTTTTTCTTTTTCGCCAACTCAGATGCGCGTTCAAC
ATGAGAAAGAGATGCGACTGAAACATGAACAAAAACAACAACAACAACAA
AAGATGCAACATCAGCAACAAGCTGCCCGACAACAAACACAACTTCCTAA
ACAACAGAACACTTCTATTCAACAACAACAGCAGCAGCAGCAGGTGTTAC
AACAACATCAAATGCAACAACAAAACGAACAACGCCATCAACACCACCCT
CAACAAAACATCCCGCCCTCTCAACAAAACATTCCACCGTCTCAACAAAA
TATTCCACCGTCTCAACAACAATCAATGCATGATCAACATCCGTTCCAAG
ACTACCAACGACAGCAACAACTTCAAGTGCAACAATCTCATCACGCTCAA
CAACAACAAATGTACAACCAACATTTTCTTCAACAACAGCAACAACTCAG
ACAACAGCAACACTTACAACAAAGACAATACAACACGACCAACATGTCGC
AACAACAAATGGGTGCTCATGCTCAGCAACAGTCGCAACAAATGCCTCTT
TCTCATCAACAAATACCGATGGGAAGTGCTCCGTCTAACATTCCAGGGCC
GATGGGAAGTGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCAGCAGCAGGT
GTTACAACAACATCAAATGCAACAACAAAACGAACAACGCCATCAACACC
ACCCTCAACAAAACATCCCGCCCTCTCAACAAAACATTCCACCGTCTCAA
CAAAATATTCCACCGTCTCAACAACAATCAATGCATGATCAACATCCGTT
CCAAGACTACCAACGACAGCAACAACTTCAAGTGCAACAATCTCATCACG
CTCAACAACAACAAATGTACAACCAACATTTTCTTCAACAACAGCAACAA
CTCAGACAACAGCAACACTTACAACAAAGACAATACAACACGACCAACAT
GTCGCAACAACAAATGGGTGCTCATGCTCAGCAACAGTCGCAACAAATGC
CTCTTTCTCATCAACAAATACCGATGGGAAGTGCTCCGTCTAACATTCCA
GGGCCGATGGGAAGTGCTCCGTCTAACATTCCAGGGCCGATGGGAAGTGC
TCCGTCTAACGTTCCAGGGCCGATGGGAAGTGCTCCGTCTAACGTTCCAG
GGCCGATGGGAAGTGCTCCGTCTAACGTTCCAGGGCCGATGGGAGGTGCT
CCCTCTAACGTTCAAGGGATGCAACCTAATCAACCGAACTCCATGAATCC
CAACCAACAGAAGAAAGGACTTTCTCTCACGGTAATCTTTATTCGCAAAG
TTTAGCCTTTCTTTACATATTTACTACTTGTTAGGCTCAACCAAGACCAC
GTCACTCTCGGACTAATAGGGACACTTTCTATTCAACAGCCATTCCAGAA
CAATCCAAGAATGCAGTCACTTCTACTTTGGACAACGTTCTTAGTCACCA
ATAGTTTCTGCTGAAATAGCAATTAGACACTTATTCTATCGCGACTTCGG
AAATGTCAGTGTCATTTATGTCAGACACAGTAGCTAGTACCTTGACCACC
AACCGAGTTTTATCCAAACTGTCCAACTCCAATAGGATATCAGTGGTGCT
TGTTGGCGCATGCCTACATTCGCATCAGCCTGCACACATTAAATTCAGCC
TCATCTGGTTAATCTAATGTAGGATCAGACAATTTCCATCTACTCTTTTA
CAGCGTGAACAAATGTTAGCAGCGCAAGAGATGTTTCGATCAGCGAATAC
CGTGACACGCGCGGAAAAAGCTCTCATACTTGGCTTCATGGCTGGTGCTA
GAGGTAAGGCAAACCTTTTGCTCTCACATCCTTCCTTTTTTTGGGATTTT
TATTTCGCAAACTTATTCTAAATCCAGATAAAGTCTGTTCCAAAAAGTTC
CAAAAATATTGGCAGTCCGCACATTTCCATAGGAAAAAAAATCGAAATTT
GGAGAGTTTGGAAGATAATTTTGAGTGGATGGTTTTAAGGGTTTAAAAGT
TTTAAGAAGAATAAACCAGCCGAGGCTGGAAGGTCAGCCAATAGAGCTTA
GCTAGATAGCTTTAATAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNAAAAATGAAGATTTTTTCTACTGAACCAATATTCTTAAA
TTTTACACTTTTCTGAATCTTCGCTGTATTCAGAAGGTGCAGTGAAAGTC
GCGAAAGTTTTTCCCCCTAATGTATTTTCAATCATCAAAGTTAAAATTCA
GGTAAGTTTAAGTCCGGCATATATTCTTTCAAGTAGAAAAATCCTCATTC
TTTTCTTCTTTTTCGAAAAAATAATCCACTCAAAATTACTCTACCATTTT
CCCTTCATCAACAGTAATGTGTAAAGTGTCAACCGGACATTCAATGTTTC
TGAAACAAGACCTTATTCTCTTCCCTTATTTTTCTGACAAATTAAGATAT
GTTTTCTTCATAAAAGGGTGGATTCAAAGAAGTTACTTTTTATGATCAGA
GCCATACAACAGGAGTATATGAAATGATCAACCGGATTTCTTTCTTTCTT
TTTCTGTACACCAGAGAATCCATTTCCACAACAAGGTGCAGTGATTACCA
TCAAGTTGAGTGAAGAAATGATCCCTCAAGGAGAACAACAAGTTTTGGTT
GAAATGTTATTTGAAATGAACTATGATACCGGTCATTGGCGCAGGTTGAA
ACGAACTCGTGTTATTCAACAAAACACTCCAAATTGAGAGTGCAATTGAT
ATTTGTAAATAATTCTTTCTTGATAATGGAGAAAAACAGAAACGTTGCTC
TAAGATATATAACTTTTCGTATAACTTTTCCACGAATTATTCCAGTGAGA
TGTTTATCAGGGGGATTAGGGTCAGAATTTTCCGGAAAAATAAATAACTC
GGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003946XLOC_003946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007051-exon-sc0000073-1575043694:60034..60293TCONS_00007051-exon-sc0000073-1575043694:60034..60293Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1575043694:59243..59506TCONS_00007051-exon-sc0000073-1575043694:59243..59506Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1575043694:57900..58208TCONS_00007051-exon-sc0000073-1575043694:57900..58208Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1575043694:57782..57833TCONS_00007051-exon-sc0000073-1575043694:57782..57833Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1575043694:57663..57748TCONS_00007051-exon-sc0000073-1575043694:57663..57748Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1575043694:57141..57240TCONS_00007051-exon-sc0000073-1575043694:57141..57240Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1575043694:54191..54529TCONS_00007051-exon-sc0000073-1575043694:54191..54529Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1510915933:60034..60293TCONS_00007051-exon-sc0000073-1510915933:60034..60293Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1510915933:59243..59506TCONS_00007051-exon-sc0000073-1510915933:59243..59506Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1510915933:57900..58208TCONS_00007051-exon-sc0000073-1510915933:57900..58208Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1510915933:57782..57833TCONS_00007051-exon-sc0000073-1510915933:57782..57833Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1510915933:57663..57748TCONS_00007051-exon-sc0000073-1510915933:57663..57748Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1510915933:57141..57240TCONS_00007051-exon-sc0000073-1510915933:57141..57240Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1510915933:54191..54529TCONS_00007051-exon-sc0000073-1510915933:54191..54529Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1491911889:60034..60293TCONS_00007051-exon-sc0000073-1491911889:60034..60293Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1491911889:59243..59506TCONS_00007051-exon-sc0000073-1491911889:59243..59506Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1491911889:57900..58208TCONS_00007051-exon-sc0000073-1491911889:57900..58208Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1491911889:57782..57833TCONS_00007051-exon-sc0000073-1491911889:57782..57833Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1491911889:57663..57748TCONS_00007051-exon-sc0000073-1491911889:57663..57748Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1491911889:57141..57240TCONS_00007051-exon-sc0000073-1491911889:57141..57240Clytia hemisphaericaexon
TCONS_00007051-exon-sc0000073-1491911889:54191..54529TCONS_00007051-exon-sc0000073-1491911889:54191..54529Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:54191..60293 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.93	25.5726	23.1197	18.4437	8.25889	4.95582	6.2621	8.8341	6.80124	6.48791	9.67197	6.77471	8.22618	15.9469	7.07312	9.02092	7.27549	8.62933	5.73697	4.87836	8.24456	6.74205	18.8953	18.5065	11.8396	12.099	3.34532	4.61914	15.6597	21.033
Blast
[Close]
BLAST of TCONS_00007051 vs. Swiss-Prot (Human)
Match: NELFA (Negative elongation factor A OS=Homo sapiens GN=NELFA PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 9.009e-29
Identity = 61/95 (64.21%), Postives = 71/95 (74.74%), Query Frame = 3 
Query:  951 KKGLSLTREQMLAAQEMFRSANTVTRAEKALILGFMAGARENPFPQQGAVITIKLSE--EMIP----QGEQQVLVEMLFEMNYDTGHWRRLKRTR 1217
            KK LSLTREQM AAQEMF++AN VTR EKALILGFMAG+RENP  +QG VI IKLSE  E +P    QG   +LV+ +FEMNY TG W R K+ +
Sbjct:  428 KKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCQEQGDVIQIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYK 522
The following BLAST results are available for this feature:
BLAST of TCONS_00007051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NELFA9.009e-2964.21Negative elongation factor A OS=Homo sapiens GN=NE... [more]
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