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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007009 ID=TCONS_00007009|Name=TCONS_00007009|organism=Clytia hemisphaerica|type=transcript|length=2178bpRun BLAST on NCBI protein sequence of TCONS_00007009-protein >TCONS_00007009-protein ID=TCONS_00007009-protein|Name=TCONS_00007009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp MPTVGIKRDLLFQALGREYTVEEFEELCFDYGLELDEVTSEKTMISKEKGRun BLAST on NCBI transcript from alignment at sc0000073:85751..97028+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007009 ID=TCONS_00007009|Name=TCONS_00007009|organism=Clytia hemisphaerica|type=transcript|length=11278bp|location=Sequence derived from alignment at sc0000073:85751..97028+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:85751..97028+ >TCONS_00007009 ID=TCONS_00007009|Name=TCONS_00007009|organism=Clytia hemisphaerica|type=CDS|length=35580bp|location=Sequence derived from alignment at sc0000073:85751..97028+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007009 vs. Swiss-Prot (Human)
Match: SYFB (Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3) HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0 Identity = 372/594 (62.63%), Postives = 476/594 (80.13%), Query Frame = 2
Query: 77 MPTVGIKRDLLFQALGREYTVEEFEELCFDYGLELDEVTSEKTMISKEKGEGKASEASEEIIYKIDVPANRYDLLCLEGLTRSLLVFQEKMKIPHFKTILPTNP-QKLIIDKPTAEVRQYAVAAVLRNITFTQDSYNSFIDLQDKLHHNICRRRTLVSMGTHDLDTIQGPFTYTAKPPSEIIFKALNQTKEMTAVELMQHYKTDSHLKNFLHIIEDKPVYPVIYDANGIVLSMPPIINGDHSKITLNTKNVFIEITATDLHKAKVVLDILTTAFSCYCADKFSVEICDVISADGTTNQTPELAYREEVIYPEYACKTIGARLKGDKMAKLLTKMFLKSEVLKDG-RLRCIVPPCRADVIHACDIYEDIAIAYGYNNIEERIPRTSTIAHQLPINKLSDLIRMEIAFAGFTEALTFSLCSREDVAEKLNRPDGTKNAVHISNPKTAEFQIARTTLLPGLLKTIANNKNMPLPLKLFELSDVVLIDDQKDVGARNERRLCAVNCSKTPGFEVIHGLLDRLMTVLNKTPTADKVKNPNEGYRISKGQDPTFFPGRSADILFNGKVIGQMGVVHPEVLGKFEITNPCAALEINLEVFL 1852
MPTV +KRDLLFQALGR YT EEF+ELCF++GLELDE+TSEK +ISKE+G KA+ AS+ ++YKIDVPANRYDLLCLEGL R L VF+E++K P +K ++P QKLII + TA++R +AVAAVLRNI FT+D Y+SFI+LQ+KLH NICR+R LV++GTHDLDT+ GPFTYTAK PS+I FK LN+TKE TA ELM YKTD+HLK++LHIIE+KP+YPVIYD+NG+VLSMPPIINGDHS+IT+NT+N+FIE T TD KAK+VLDI+ T FS YC ++F+VE +V+ +G ++ PELAYR+E++ + K +G R + +AKLLT+M+LKSEV+ DG ++ +PP RAD+IHACDI ED AIAYGYNNI+ +P+T TIA+Q P+NKL++L+R ++A AGFTEALTF+LCS+ED+A+KL AVHISNPKTAEFQ+ARTTLLPGLLKTIA N+ MPLPLKLFE+SD+V+ D DVGA+N R LCAV +K PGFE+IHGLLDR+M +L+ P DK GY I + P FFPGR A+I G+ +G++GV+HP+V+ KFE+T PC++LEIN+ FL
Sbjct: 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDK-----GGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 589 The following BLAST results are available for this feature:
BLAST of TCONS_00007009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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