TCONS_00007009-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007009-protein
Unique NameTCONS_00007009-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007009-protein ID=TCONS_00007009-protein|Name=TCONS_00007009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=592bp
MPTVGIKRDLLFQALGREYTVEEFEELCFDYGLELDEVTSEKTMISKEKG
EGKASEASEEIIYKIDVPANRYDLLCLEGLTRSLLVFQEKMKIPHFKTIL
PTNPQKLIIDKPTAEVRQYAVAAVLRNITFTQDSYNSFIDLQDKLHHNIC
RRRTLVSMGTHDLDTIQGPFTYTAKPPSEIIFKALNQTKEMTAVELMQHY
KTDSHLKNFLHIIEDKPVYPVIYDANGIVLSMPPIINGDHSKITLNTKNV
FIEITATDLHKAKVVLDILTTAFSCYCADKFSVEICDVISADGTTNQTPE
LAYREEVIYPEYACKTIGARLKGDKMAKLLTKMFLKSEVLKDGRLRCIVP
PCRADVIHACDIYEDIAIAYGYNNIEERIPRTSTIAHQLPINKLSDLIRM
EIAFAGFTEALTFSLCSREDVAEKLNRPDGTKNAVHISNPKTAEFQIART
TLLPGLLKTIANNKNMPLPLKLFELSDVVLIDDQKDVGARNERRLCAVNC
SKTPGFEVIHGLLDRLMTVLNKTPTADKVKNPNEGYRISKGQDPTFFPGR
SADILFNGKVIGQMGVVHPEVLGKFEITNPCAALEINLEVFL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003923XLOC_003923Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007009TCONS_00007009Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005146B3/B4_tRNA-bd
IPR005147tRNA_synthase_B5-dom
IPR004531Phe-tRNA-synth_IIc_bsu_arc
IPR020825Phe-tRNA_synthase_B3/B4
IPR009061DNA-bd_dom_put
Vocabulary: Molecular Function
TermDefinition
GO:0004826phenylalanine-tRNA ligase activity
GO:0003723RNA binding
GO:0005524ATP binding
GO:0000287magnesium ion binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006432phenylalanyl-tRNA aminoacylation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006432 phenylalanyl-tRNA aminoacylation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004826 phenylalanine-tRNA ligase activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005146B3/B4 tRNA-binding domainSMARTSM00873B3_4_2coord: 116..278
e-value: 1.9E-22
score: 90.6
IPR005146B3/B4 tRNA-binding domainPFAMPF03483B3_4coord: 117..277
e-value: 1.7E-27
score: 96.1
IPR005147tRNA synthetase, B5-domainSMARTSM00874B5_2coord: 303..372
e-value: 7.2E-13
score: 58.8
IPR005147tRNA synthetase, B5-domainPFAMPF03484B5coord: 311..372
e-value: 1.9E-12
score: 47.2
IPR005147tRNA synthetase, B5-domainPROSITEPS51483B5coord: 301..377
score: 21.304
NoneNo IPR availableGENE3D3.30.56.10coord: 303..375
e-value: 5.5E-15
score: 54.7
NoneNo IPR availableGENE3D3.30.930.10coord: 385..592
e-value: 2.5E-53
score: 180.1
NoneNo IPR availableGENE3D3.30.56.10coord: 1..89
e-value: 2.0E-40
score: 136.7
NoneNo IPR availableCDDcd00769PheRS_beta_corecoord: 390..591
e-value: 3.21891E-53
score: 180.532
NoneNo IPR availableSUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 369..591
IPR004531Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolicTIGRFAMTIGR00471TIGR00471coord: 1..592
e-value: 1.0E-147
score: 490.9
IPR020825Phenylalanyl-tRNA synthetase, B3/B4GENE3D3.50.40.10coord: 125..268
e-value: 1.7E-34
score: 118.5
IPR020825Phenylalanyl-tRNA synthetase, B3/B4SUPERFAMILY56037PheT/TilS domaincoord: 219..258
IPR009061Putative DNA-binding domainSUPERFAMILY46955Putative DNA-binding domaincoord: 307..376
IPR009061Putative DNA-binding domainSUPERFAMILY46955Putative DNA-binding domaincoord: 6..87

Blast
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BLAST of TCONS_00007009-protein vs. Swiss-Prot (Human)
Match: SYFB (Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3)

HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 372/594 (62.63%), Postives = 476/594 (80.13%), Query Frame = 0 
Query:    1 MPTVGIKRDLLFQALGREYTVEEFEELCFDYGLELDEVTSEKTMISKEKGEGKASEASEEIIYKIDVPANRYDLLCLEGLTRSLLVFQEKMKIPHFKTILPTNP-QKLIIDKPTAEVRQYAVAAVLRNITFTQDSYNSFIDLQDKLHHNICRRRTLVSMGTHDLDTIQGPFTYTAKPPSEIIFKALNQTKEMTAVELMQHYKTDSHLKNFLHIIEDKPVYPVIYDANGIVLSMPPIINGDHSKITLNTKNVFIEITATDLHKAKVVLDILTTAFSCYCADKFSVEICDVISADGTTNQTPELAYREEVIYPEYACKTIGARLKGDKMAKLLTKMFLKSEVLKDG-RLRCIVPPCRADVIHACDIYEDIAIAYGYNNIEERIPRTSTIAHQLPINKLSDLIRMEIAFAGFTEALTFSLCSREDVAEKLNRPDGTKNAVHISNPKTAEFQIARTTLLPGLLKTIANNKNMPLPLKLFELSDVVLIDDQKDVGARNERRLCAVNCSKTPGFEVIHGLLDRLMTVLNKTPTADKVKNPNEGYRISKGQDPTFFPGRSADILFNGKVIGQMGVVHPEVLGKFEITNPCAALEINLEVFL 592
            MPTV +KRDLLFQALGR YT EEF+ELCF++GLELDE+TSEK +ISKE+G  KA+ AS+ ++YKIDVPANRYDLLCLEGL R L VF+E++K P +K ++P    QKLII + TA++R +AVAAVLRNI FT+D Y+SFI+LQ+KLH NICR+R LV++GTHDLDT+ GPFTYTAK PS+I FK LN+TKE TA ELM  YKTD+HLK++LHIIE+KP+YPVIYD+NG+VLSMPPIINGDHS+IT+NT+N+FIE T TD  KAK+VLDI+ T FS YC ++F+VE  +V+  +G ++  PELAYR+E++  +   K +G R   + +AKLLT+M+LKSEV+ DG ++   +PP RAD+IHACDI ED AIAYGYNNI+  +P+T TIA+Q P+NKL++L+R ++A AGFTEALTF+LCS+ED+A+KL        AVHISNPKTAEFQ+ARTTLLPGLLKTIA N+ MPLPLKLFE+SD+V+ D   DVGA+N R LCAV  +K PGFE+IHGLLDR+M +L+  P  DK      GY I   + P FFPGR A+I   G+ +G++GV+HP+V+ KFE+T PC++LEIN+  FL
Sbjct:    1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDK-----GGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 589
The following BLAST results are available for this feature:
BLAST of TCONS_00007009-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYFB0.000e+062.63Phenylalanine--tRNA ligase beta subunit OS=Homo sa... [more]
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