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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007000 ID=TCONS_00007000|Name=TCONS_00007000|organism=Clytia hemisphaerica|type=transcript|length=2099bpRun BLAST on NCBI protein sequence of TCONS_00007000-protein >TCONS_00007000-protein ID=TCONS_00007000-protein|Name=TCONS_00007000-protein|organism=Clytia hemisphaerica|type=polypeptide|length=487bp MKVYHRQKDWHGVQSIFSSSLGLTEQFIYRNAAIKSRTFVSRLSLSNTLNRun BLAST on NCBI transcript from alignment at sc0000073:10949..21146+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007000 ID=TCONS_00007000|Name=TCONS_00007000|organism=Clytia hemisphaerica|type=transcript|length=10198bp|location=Sequence derived from alignment at sc0000073:10949..21146+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000073:10949..21146+ >TCONS_00007000 ID=TCONS_00007000|Name=TCONS_00007000|organism=Clytia hemisphaerica|type=CDS|length=19032bp|location=Sequence derived from alignment at sc0000073:10949..21146+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007000 vs. Swiss-Prot (Human)
Match: DCAF8 (DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1) HSP 1 Score: 390.193 bits (1001), Expect = 8.657e-126 Identity = 197/403 (48.88%), Postives = 268/403 (66.50%), Query Frame = 1
Query: 127 WHGVQSIFSSSLGLTEQFIYRNAAIKSRTFVSRLSLSNTLNFHEGCVNTVNFSHSGDFIASGSDDLKICIWDWNNNHNNQPLLAFDSGHHGNVFQTKFMAHTNDTVVVSCARDGEIRVSYLSSAKD-KNQITKKILQHKGSAHKLSVSKSSPHLLKSAGEDGVVYNIDLRDTTTPQKLLTVRNTKGGKIALYSIDTNPLNDHEFAVSGRDPFARIYDERMLSE-ENNGLLDSYCADHLKAPEEKNFNPPNITCLMYNYNGTELLCSYNDEEIYLFDIKDSSQKDFTHVYKGHRNSDTVKGVNFFGPRSEYIVSGSDCGHVFLWDKETEEIVNFMKGDE-GVVNVLEPHPTSCILATSGLEHNIKIWSPVGQSFKSNEELDKQVRENAAAREEDRKHGGGRDLF 1326
W + ++ LG + +F+Y A +R FV R L + L H GCVNT++F+ G ++ASGSDDLK+ +WDW QP+L F+SGH NVFQ KF+ ++ D+ + CARDG++RV+ LS+ + KN TK++ QHKG++HKL++ SP SAGED VV+ IDLR P L V K K+ LY+I NP N H+FAV GRD F RIYD+R + E ENNG+L +C HL E K NITCL+Y+++GTELL SYNDE+IYLF+ S + YKGHRN+ TVKGVNF+GP+SE++VSGSDCGH+FLW+K + +I+ FM+GD+ GVVN LEPHP +LATSGL+H++KIW+P ++ L +++N R+ED H DLF
Sbjct: 152 WQALPALRERELGSSARFVYE--ACGARVFVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRR---QPVLDFESGHKSNVFQAKFLPNSGDSTLAMCARDGQVRVAELSATQCCKN--TKRVAQHKGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQDR-PASKLVVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKIDENENNGVLKKFCPHHLVNSESK----ANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRYKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPHPHLPVLATSGLDHDVKIWAPTAEASTELTGLKDVIKKNKRERDEDSLH--QTDLF 540 The following BLAST results are available for this feature:
BLAST of TCONS_00007000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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