TCONS_00006999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006999
Unique NameTCONS_00006999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006999 ID=TCONS_00006999|Name=TCONS_00006999|organism=Clytia hemisphaerica|type=transcript|length=507bp
CAGTGCGGCCAACGCTGAAGAAAAATTACGTTATGCTGCTTACAATTGTA
TTGCTATTGATGCTGATATGAGTCCATGGGAAGACTGATCCCCCTGCCTA
AAGACCGTGAATAGACTCATAAAAGGTACGCAAATTCTACTCCATTTGTT
ACGATCTGCCTGCAGACCGCGGATAGACTACCGACCGAAAGGAAAGATTT
GCAGCCTATGGTCTACACGCATTCGGTATAAATTCAGTTCAGTTTCGACC
AATCGTGATGATGATGCTCTACAAAGCTAACTGAATATTGGTCCAAATCc
aattttttcctattttcttaAGCAAAATATATTTCCTAATCttattaggc
gagaccaatttgattagttgttttacgggcccgaccgacccagaaattcc
aaaaatcgaaaaagttattttaatAGTACATTTTTATTACTCAGTTTTCC
AAGGTTTCGAGAATtctttgttcaatattttattttatccatGAGTTTGA
GCCTTTT
Run BLAST on NCBI

transcript from alignment at sc0000072:710687..711193

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006999 ID=TCONS_00006999|Name=TCONS_00006999|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at sc0000072:710687..711193 (Clytia hemisphaerica)
AAAAGGCTCAAACTCatggataaaataaaatattgaacaaagaATTCTCG
AAACCTTGGAAAACTGAGTAATAAAAATGTACTattaaaataactttttc
gatttttggaatttctgggtcggtcgggcccgtaaaacaactaatcaaat
tggtctcgcctaataaGATTAGGAAATATATTTTGCTtaagaaaatagga
aaaaattgGATTTGGACCAATATTCAGTTAGCTTTGTAGAGCATCATCAT
CACGATTGGTCGAAACTGAACTGAATTTATACCGAATGCGTGTAGACCAT
AGGCTGCAAATCTTTCCTTTCGGTCGGTAGTCTATCCGCGGTCTGCAGGC
AGATCGTAACAAATGGAGTAGAATTTGCGTACCTTTTATGAGTCTATTCA
CGGTCTTTAGGCAGGGGGATCAGTCTTCCCATGGACTCATATCAGCATCA
ATAGCAATACAATTGTAAGCAGCATAACGTAATTTTTCTTCAGCGTTGGC
CGCACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003919XLOC_003919Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006999-exon-sc0000072-1491911889:710687..711193TCONS_00006999-exon-sc0000072-1491911889:710687..711193Clytia hemisphaericaexon
TCONS_00006999-exon-sc0000072-1510915933:710687..711193TCONS_00006999-exon-sc0000072-1510915933:710687..711193Clytia hemisphaericaexon
TCONS_00006999-exon-sc0000072-1575043694:710687..711193TCONS_00006999-exon-sc0000072-1575043694:710687..711193Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:710687..711193 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.7645	53.5799	40.4746	41.0933	16.0737	10.6603	17.0653	14.1289	22.1079	22.0303	19.198	18.6478	24.4356	24.54	25.6248	30.9302	38.415	32.4922	30.7093	28.8284	29.2043	27.3504	34.0876	33.4482	33.6564	33.905	18.8569	15.79	22.974	24.4568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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