TCONS_00006997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006997
Unique NameTCONS_00006997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006997 ID=TCONS_00006997|Name=TCONS_00006997|organism=Clytia hemisphaerica|type=transcript|length=397bp
tcgaaattcagtctctttaaagggtcgattttcgaactttggctcggaca
ttTTTTTAAGCTTGGAATTTTGAAAGCCCCCTTCTTTGGGGGaagataaa
tttttattttgttagtCAAGCATCGTACGCAAAATATTACAATCAATTat
agaaaaaatatatgaatTCCTTACATAATGGTTTATACAAAAAGTACACG
GTTAAAAATAATATCAGAAAAATATGTTATATATGTCAGCGTCTTTAAGT
AGTCGTTAATAATTTTTGCATTACTTTAATTTCTCTAAATTACCACCTAA
ATTAGTTGGTGCCACTGACCTTCataaaccctggaccaagctacaCCTGT
CATCTTTGTTGAACGAAGAAAAATGGTTCCCTAATGGTAGCAATATN
Run BLAST on NCBI

transcript from alignment at sc0000072:697486..697882

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006997 ID=TCONS_00006997|Name=TCONS_00006997|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at sc0000072:697486..697882 (Clytia hemisphaerica)
NATATTGCTACCATTAGGGAACCATTTTTCTTCGTTCAACAAAGATGACA
GGtgtagcttggtccagggtttatGAAGGTCAGTGGCACCAACTAATTTA
GGTGGTAATTTAGAGAAATTAAAGTAATGCAAAAATTATTAACGACTACT
TAAAGACGCTGACATATATAACATATTTTTCTGATATTATTTTTAACCGT
GTACTTTTTGTATAAACCATTATGTAAGGAattcatatattttttctatA
ATTGATTGTAATATTTTGCGTACGATGCTTGactaacaaaataaaaattt
atcttCCCCCAAAGAAGGGGGCTTTCAAAATTCCAAGCTTAAAAAaatgt
ccgagccaaagttcgaaaatcgaccctttaaagagactgaatttcga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003917XLOC_003917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006997-exon-sc0000072-1491911889:697486..697882TCONS_00006997-exon-sc0000072-1491911889:697486..697882Clytia hemisphaericaexon
TCONS_00006997-exon-sc0000072-1510915933:697486..697882TCONS_00006997-exon-sc0000072-1510915933:697486..697882Clytia hemisphaericaexon
TCONS_00006997-exon-sc0000072-1575043694:697486..697882TCONS_00006997-exon-sc0000072-1575043694:697486..697882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:697486..697882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74255	1.69604	2.13669	1.69742	4.36878	2.8154	1.72249	3.17991	3.35904	1.22174	2.5112	1.25681	2.1336	1.44789	0.246911	0	0.934393	1.36573	2.04996	1.31374	1.11527	0.646407	1.08186	0.444528	2.26414	3.07403	0	0	0.242219	0.24432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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